ID:

dsi_12571

Coordinate:

3r:17239675-17239824 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-20.5	-20.5	-20.5

Flybase annnotation

CDS [3r_17239825_17239953_+]; exon [3r_17239825_17239953_+]; intron [3r_17239290_17239824_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TAAATCAGTAGGTTTCATTTCATATAGAACTCCAATTTGTTTTTAATTTTATGATCATTTTGTATCAATGAATGTGAAGTATAGGTGCAAGTTGGTGATATCTAAAACTGTAATGCTAAGCACTTAATAAGTACATTACTATTTAAAATATTTTAAAATAGTTCTTGATATTTTACAAATTTATTAATCCCCCTCGACAGAAAGGCAGCCTGCAGGCGTACAACCTGGGAAGGAATCTGCGCATGCGCTA ************************************************.((((...((((((.....((((((.(((..(((((((...((((((.(((........))).)))))))))))))...........((((((((((....))).))))))).))).))))))))))))...))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	O001 Testis	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
......................TATAGAACTCCAATTTGTTTT...............................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................TGGACAGAAAAGAAGCCTGCAG...................................	22	3	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................ATCTAAAACTGTAATGCTAAGCA................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0
.....................................TGTTTTTAATTTTATGAT...................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................TGCTATCTAGAACTGTAAT........................................................................................................................................	19	2	3	0.33	1	0	0	0	0	1	0	0
........................................................................TCTGACGTATAGGTGC..................................................................................................................................................................	16	2	8	0.13	1	0	0	0	0	0	1	0
..............................................TTTTATGATGATTTTGT...........................................................................................................................................................................................	17	1	17	0.06	1	0	0	0	0	0	0	1

Anti-sense strand reads

ATTTAGTCATCCAAAGTAAAGTATATCTTGAGGTTAAACAAAAATTAAAATACTAGTAAAACATAGTTACTTACACTTCATATCCACGTTCAACCACTATAGATTTTGACATTACGATTCGTGAATTATTCATGTAATGATAAATTTTATAAAATTTTATCAAGAACTATAAAATGTTTAAATAATTAGGGGGAGCTGTCTTTCCGTCGGACGTCCGCATGTTGGACCCTTCCTTAGACGCGTACGCGAT ************************************************.((((...((((((.....((((((.(((..(((((((...((((((.(((........))).)))))))))))))...........((((((((((....))).))))))).))).))))))))))))...))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553488 RT_0-2 hours eggs	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.............................................................................................................................................................................................GGGGAGCTGTCTTTCCGTC..........................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................ACATTACGATTCGTGAATTA..........................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................GTTGGACCCTTCCTTAGACGCG........	22	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................ATGCCGATTCGTGAATTATGCATGT...................................................................................................................	25	3	1	1.00	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................ACCGCTTGTTGGACCCT....................	17	2	16	0.56	9	0	8	0	0	1	0	0	0
.....................................................................................................................................................................................................................ACCGCTTGTTGGACCC.....................	16	2	20	0.25	5	0	5	0	0	0	0	0	0
......................................................................................................................................................................................................................CCGCTTGTTGGACCC.....................	15	1	5	0.20	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................AAATTTTGTCAAGAGCTATG...............................................................................	20	3	12	0.08	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................ATCCAGAACTAGAAAAT...........................................................................	17	2	16	0.06	1	0	0	0	0	0	0	1	0
...................................................................................................................................................................GAACTATCAAGTGTTTA......................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................GGCATGTTGGGCCCTT...................	16	2	20	0.05	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................CCGCTAGTTGGACCCT....................	16	2	20	0.05	1	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................GCCGGACCCTTCTTTAGAC...........	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Generated: 04/23/2015 at 02:51 PM