ID:

dsi_12554

 Coordinate:

3r:4214268-4214323 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intron [3r_4214158_4214219_+]; CDS [3r_4214220_4214267_+]; exon [3r_4214220_4214267_+]; exon [3r_4214324_4214551_+]; CDS [3r_4214324_4214551_+]; intron [3r_4214268_4214323_+]

No Repeatable elements found

Sense Strand Reads

--################################################--------------------------------------------------------##################################################
AGAAAATCAGGACCATAGAACTCGACGGAAAGACCATTAAACTGCAAATCGTAAGCATAAAGACGCCAGAGGCAATCTAGTCCAGAGCTAATTAGTCTGTTTACAGTGGGATACTGCTGGCCAGGAGCGCTTCCGCACCATCACGTCTTCATACTA
**************************************************(((((((....(((......(((..(((.....)))))).....))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR902008
ovaries
 SRR902009
testis
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M023
head
.CAAAATCAGGACCATAGAACT...................................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...............TAGAACTCGACGGAAAGACCATTA..................................................................................................................... 24 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0 0 0 0
.............CATAGAACTCGACGGAAA............................................................................................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............ATAGAACTCGACGGAAAGACC......................................................................................................................... 21 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
....................CTAGACGGAAAGACC......................................................................................................................... 15 1 4 2.50 10 0 0 0 0 0 1 0 3 6 0 0 0 0
......TCAGGACCATAGAACTCGACGGAA.............................................................................................................................. 24 0 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0
..............ATAGAACTCGACGGAAAGA........................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......CAGGACCATAGAACTCGACGGAAA............................................................................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........ACCATAGAACTCGACGGAAAGACCATT...................................................................................................................... 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
....................CTCGACGGAAAGACCATTAAACTG................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............ATAGAACTCGACGGAAAGACCAT....................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......TCAGGACCATAGAACTCGACGGAAAGACC......................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................GATACTGCTGGCCAGGA.............................. 17 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................ACTCGACGGAAAGACCATTAAACTGC............................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............CCATAGAACTCGACGGAAA............................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GGCCAGGAGCGCTTCCGCACC................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TACTGCTGGCCAGGAGCGC.......................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................GAAAGACCATTAAACTGCA.............................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................AGGAGCGCTTCCGCACCA................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........ACCATAGAACTCGACGGAAA............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......TCAGGACCATAGAACTCGACGGAAAGACCA........................................................................................................................ 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....ATCAGGACCATAGAACTCGACG................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......TCAGGACCATAGAACTCGACGGAAA............................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........GACCATAGAACTCGACGGAA.............................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.CAAAATCAGGACCATAGAACTCGA................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGGATACTGCTGGCCAGGAGCGC.......................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............TAGAACTCGACGGAAAGACCATTAAA................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........ACCATAGAACTCGACGGAAAGACCAT....................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......TCAGGACCATAGAACTCGACGGAAAGAC.......................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....AATCAGGACCATAGAACT...................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........GACCATAGAACTCGACGGAAAGACCAT....................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........ACCATAGAACTCGACGGAAAGACCATTA..................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCCAGGAGCGCTTCCGCACC................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............TAGAACTCGACGGAAAGACCATTAAAC.................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........AGGACCATAGAACTCGACGGAAA............................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...AAATCAGGACCATAGAACTC..................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................CGACGGTATGACCCTTAAACTGC............................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................AAAGACCAATAAACTCCCAATC.......................................................................................................... 22 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........GACCATAGAACTCGACGGAAA............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGGATACTGCTGGCCAGGAGCGCTTC....................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................GACCATTAAACTGCAAATCT......................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............CATAGAACTCGACGGAAAGACCATT...................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....ATCAGGACCATAGAACTCGACGGAAAA............................................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CTGGGATACTGCTGGCCAGG............................... 20 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............CCATGGAGCTTGACGGAAAGA........................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TCTGGGATACTGCTGGCCAGGAGCGCAT........................ 28 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................GCTGGACAGGAGCGCTTCC...................... 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................CTAGACGGAAAGACCC........................................................................................................................ 16 2 18 0.28 5 0 0 0 0 0 1 0 2 1 1 0 0 0
.......................................................................................................CAGTGGGAAACTGCT...................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................CGGAAGGATCATTAAAC.................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................GGGATACCGCTGGTCAGGA.............................. 19 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................ATTGGACGGAAAGACC......................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................TAAGCATAAGGACGGTAG....................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCTTTTAGTCCTGGTATCTTGAGCTGCCTTTCTGGTAATTTGACGTTTAGCATTCGTATTTCTGCGGTCTCCGTTAGATCAGGTCTCGATTAATCAGACAAATGTCACCCTATGACGACCGGTCCTCGCGAAGGCGTGGTAGTGCAGAAGTATGAT
**************************************************(((((((....(((......(((..(((.....)))))).....))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
.................................................................................................................................GAAGGCGAGGGAGTTCAGAAG...... 21 3 3 0.33 1 0 1 0
............................................................................................................................................AGTGCAGTAGTATGA. 15 1 9 0.22 2 2 0 0
.........................................................................................................................................GGTCGTGCAGTAGTATGA. 18 2 5 0.20 1 1 0 0
...................................................................................................................................AGGGGTGGTAGTGCA.......... 15 1 7 0.14 1 0 0 1
............................................................................................................................CGCGCGAAGTCGTGGTA............... 17 2 9 0.11 1 1 0 0

Generated: 04/23/2015 at 11:20 PM