ID:

dsi_12548

 Coordinate:

3r:25722291-25722551 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -24.2 -24.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGTAGCAGAAACCCATAACAAACCTAGATTTGAGACACTTTTATGATTCAGTAAGAACCGCCAACTAACAGCAGAAAATAAAGCAGCACCACCGACAAGAAGAGCCATGAAAAACTACAAAAATAAGAAACACGATGCAGAATATCTCGAACAGACGAAAAGTTGGTACCCCTCTGTCTAAGTAATTGTTGTTTGATCTGCAGCCAAATGAAATACCAACTAATCCCGATTAATAACCCCGAAAGCTTCCAGCTAATTGAAAGTTAAAAGTTAGTCTTAAGGACCTCTGCCCAAATAAAGCCCAGAAAACTTGGGCCAACTTGAATGTTGTACCTGCAACTTGATTGACTGTTTGACATTG
********************************************************************************************************************************.......((((((.....((((((((.(((....((((.((......))))))....))))))))))))))))).....................(((.((((((((((..(((.((((...))))..)))...)))....)))))))....))).........********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................................................................................................................................................GTTAGTCTTAAGGACCTCTGCCC..................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................................AACACGATGCAGAATATCTCGAAC................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................GTACCCCTCTGTCTAAGTAATTGT............................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................ACGATGCAGAATATCTCGAACAGA.............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ATCTCGAACAGACGAAAAGTTGGG.................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CAGCCAAATGAAATACCA............................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................ACTTGATTGACTGTTTCAGAG.. 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................AAATAACATCAGAAAATAAGGCA.................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CTTGATTGACTGTTTCAGAG.. 20 3 5 0.60 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CTTGATTGACTGTTTCAGAGT. 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GACTTGATTGACTGTTTCAGA... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGGACCTCTGCCGAAAAAA............................................................... 20 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..............................TCGGACTCTTTTATGATTC........................................................................................................................................................................................................................................................................................................................ 19 3 20 0.15 3 1 0 2 0 0 0 0 0 0 0
.....................................................................................GCACCAGCGACAAGAA.................................................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.............................TTCGGACTCTTTTATGATTC........................................................................................................................................................................................................................................................................................................................ 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GCTTGCTTGACTGTTAGAC.... 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................GTACTTGTTGTTTGA..................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................ATTGATGTTTGATCGG................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..............................TCAGACTCTTTGATGATTC........................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCATCGTCTTTGGGTATTGTTTGGATCTAAACTCTGTGAAAATACTAAGTCATTCTTGGCGGTTGATTGTCGTCTTTTATTTCGTCGTGGTGGCTGTTCTTCTCGGTACTTTTTGATGTTTTTATTCTTTGTGCTACGTCTTATAGAGCTTGTCTGCTTTTCAACCATGGGGAGACAGATTCATTAACAACAAACTAGACGTCGGTTTACTTTATGGTTGATTAGGGCTAATTATTGGGGCTTTCGAAGGTCGATTAACTTTCAATTTTCAATCAGAATTCCTGGAGACGGGTTTATTTCGGGTCTTTTGAACCCGGTTGAACTTACAACATGGACGTTGAACTAACTGACAAACTGTAAC
*********************************************************************.......((((((.....((((((((.(((....((((.((......))))))....))))))))))))))))).....................(((.((((((((((..(((.((((...))))..)))...)))....)))))))....))).........******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................................................................................................GGGCCTTCGAAGGTCG............................................................................................................ 16 1 1 32.00 32 32 0 0 0 0 0 0
............................................................................................................................................................................................................................................AGGGCCTTCGAAGGTCG............................................................................................................ 17 2 9 12.11 109 109 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GGGCCTTCGAAGGTCGA........................................................................................................... 17 1 1 5.00 5 5 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GGGCCTTCGAAGGTC............................................................................................................. 15 1 5 3.60 18 18 0 0 0 0 0 0
............................................................................................................................................................................................................................................AGGGCCTTCGAAGGTCGA........................................................................................................... 18 2 4 2.25 9 9 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GGCCTTCGAAGGTCG............................................................................................................ 15 1 5 1.20 6 6 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GGGCCTTCGAAGGTCGAC.......................................................................................................... 18 2 8 1.13 9 9 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GGCCTTCGAAGGTCGA........................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................CTGAACTAACTGACAAAGTCT... 21 3 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................AAGGGCCTTCGAAGGTCGAT.......................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................ACTAGACGTCAGTTT......................................................................................................................................................... 15 1 17 0.24 4 0 0 4 0 0 0 0
.............................................................................................................................................................................................................................................GGGCCTTCGAAGGTCGACCA........................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0 0
.....................................................................TCGTCTGTTTTTTCGTCTTGGT.............................................................................................................................................................................................................................................................................. 22 3 6 0.17 1 0 0 1 0 0 0 0
..................................................................................................CTTATTGGTAGTTTTTGATGT.................................................................................................................................................................................................................................................. 21 3 7 0.14 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................ATTTCGGGCCTTTGGAA................................................. 17 2 11 0.09 1 0 0 0 0 1 0 0
..........TGGGTATCATCTGGATCTA............................................................................................................................................................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 1 0
........................................................................................GGTGGCTGTTCGTCT.................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................ACAACTAGACGTCGGCTTAC....................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................................................................................................................................TATGGTTGATTAGAGTTGA.................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:25722241-25722601 + dsi_12548 A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA--CTACA-----A----AAATA-------AGAA---------AC----------ACGATGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAGTTGGTACCC-----CTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGTT--------------------------------------------AAAAGTTAGT-CTTAAGGACCTCTGCCC-A-------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC--ATTG-
droSec2 scaffold_4:5229173-5229533 + A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA--TTACA-----A----AAATA-------AGAA---------AC----------ACGATGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAGTTGGTACCC-----CTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGTT--------------------------------------------AAAAGTTAGT-CTTAAGGACCGTTGCCC-A-------------------------------------------------------------AATAAATCCAAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC--ATTG-
dm3 chr3R:26402380-26402736 + A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA--CTACA-----A----AAATA-------TGAA---------AC----------ACGATGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAGTTGGTACCC-----ATC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGTT--------------------------------------------AAAAGTTAGT-CTTAAGGACCTCTGCCCG--------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC-------
droEre2 scaffold_4820:1602282-1602643 - A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACGTAGA-------------------------------------TTTGA---GACACT-TTATGATTCAGTAAGAAC---CACCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGCAGAGCCATGAA-AAA--CTACA-----G----AAATA-------AAAA---------AC--ATGCAGAAACGATGCAGAA-----TAT------C------TG-AAACA-------GA----CGAAAAGTTGGTACCC-----CTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCGA---AA-A-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCAA-AAAGC------TTCCAGCTAATTGAAAGT---------------------------------------------------TAGT-CTTAAGGACCTCTGCCC-A-------------------------------------------------------------AATAAGGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC--ATTG-
droYak3 3R:27322112-27322470 + A--GTAGCAGAAA------TCC-A-------------------------------AGAAATAACAAACGTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAGC---CACCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAGGAGCCATGAA-AAA--CTACC-----A----AAATA-------AAAA---------AC----------ACGATGCAGAT-----TAT------C------GC-AAACA-------GG----CGAAAAGTTGGTACCC-----CTC-------AGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-C-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTAAGAGT---------------------------------------------------TAGT-CTTAAGGACCTCCGCCC-A-------------------------------------------------------------CAAAAAGCCCAGAA----AA-C-T-G-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGAATGT---T-T---------------GAC--ATTG-
droEug1 scf7180000409555:908238-908618 + A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAATAAGAAC---CACCAACTA---ACAGCA--------------GAGCAATAAGC-AATA---AG-CCAGCA--------------------CCACCGACA-------------------ACCAGAGCCATGAA-AAA-TCAACA-----AACAAAAATA-------TTAA---------AC----------ACGATGCAGAG-----TAT------C------TC-AAACA-------GA----CGAAAAGTTGGTATCC-----TTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCG---AAAA-----------G-A-ATA----------------------GCGATTAACCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGT---------------------------------------------------TAGT-CTTAAGGACCTCTGCCCGA-------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T---GGG---CC-CACTTGAATGTTGTACCTGC---TAC----CTGATTGACCGT---T-TTGTAC-TGATTGATTGAC--ATTG-
droBia1 scf7180000302113:959895-960256 - A--GTAGCAGAAA------CCC-------------------------------------ATAACCAAACTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAATCAGAAC---CACCAACTA---ACAGCA--------------GAA---------ACTA---GA-GCAGCA--------------------CCACCGACAG------------------AGAAGAGCCATGAT-AAA-CCTACA-----A----AAATA-------TTGA---------AC----------ACGACGCAGAG-----TAT------C------CC-AAACA-------GA----GGAAAAGTTGGTACCC-----TTC-------TGT--C-T-------AAGTAAT-TGT---TGTGTTGATC---------------------TGC---------------------------GGCCG---AAAC-----------GAA-AAA-CC-------------------CCAATTAACCCAGAATATT-------A--AC-----CCGA--AAGC------TTCCAGCCAATTGAAAGT---------------------------------------------------TAGTGATTAAGGACCTTTGCCCGA-------------------------------------------------------------TGTGAAACCCAAAA----CA-C-T-T-GGG---CC-GACTTGAATGTTGTGCCTGC---TAC----CTGATCTATTGT---T-T---------------G-TTGAATG-
droTak1 scf7180000415367:399211-399588 - A--GTAGCAGAAAA----ACCC-------------------------------------ATAACAAAACTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAATCAGAAC---CACCAACTA---ACAGCA--------------GAAA--------AATAAAAAT-GCAGCA------------CA------CCACCGACAG------------------AGAAGAGCCATGAATAAA-CCTACAAAA--A----ATATATA-----TTAA---------AT----------ACGAAGCAGAA-----TCT------C------TCGAAACA-------GATC--AAAAAAGTTGGTATCCC-C--TTC-------TGT--C-T-------AAGTAAT-TGT---TGTGTTGATC---------------------TGC---------------------------AGCCG---AAAA-----------GAA----------------------------AATTAACCCTGATTAATAATTAATA--AC----CCCGAAACAGC------TT-------------------------------------------------------------------TAGTGTTTAAGGACCTTTGCCCGA-------------------------------------------------------------AATAAAGCCCAAAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGCTA--CC----TTTCTTGATTGT---T-TTATAC---ATTGA----TTGATTG-
droEle1 scf7180000491280:2727037-2727389 + A--GTAGCAGAAA------CCC-------------------------------------ACAACAAACATAG---------------------------------------------------TTTTATGATTCAATAAGAAC---CAACAACTA---ACAGCA--------------GAA---------ATGAAAAAT-GAAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAAATCTACA-----G----ATATATAT----AAAA---------AC----------ACGATGCAAAA-----TAT------G------TG-AAACA-------GA----TGAAAAGTTGGTACCC-----TTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------GACCG---AA-A-----------GA--ATA----------------------CCAACTAACCCTGAACAAT-------ATAAC----CCCAA--AAGC------TTCCACCTAATCGAAAGT---------------------------------------------------TAAT-CTTAAGGACCCTTGCCCGA-------------------------------------------------------------AATAAAGTCCAGAA----AG-C-T-T-GGG---CC-GACTTGAATGTTGTACCTGC---TAC----TTGATTGACTGT---T-T---------------GAT--ATTG-
droRho1 scf7180000778610:3133-3486 - A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACATAGT-------------------------------------TTTGA---GACACTTTTATGATTCAATAAGAAC---CACCAACTA---ACAGCA--------------AAA---------A--A---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA-TCTACA-----A----ATATA--T----AAAA---------AC----------ACGACGCAGAA-----TAT------G------TG-AAACA-------GA----TGAAAAGTTGGTACAA-----TCC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCG---AA-A-----------GA--ATA----------------------CCAATTAACCCTGAATAAT-------A--AC----CCCGA--AAGC------TTCCACCTAATTGAAAGT---------------------------------------------------TAAT-CTTAAGGACATTTGCCCGA-------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---TAC----TTGACTGACTGT---T-T---------------TAT--ATTG-
droFic1 scf7180000454106:70353-70709 - A--GTAGCAGAA-------CCC-------------------------------------ATAACAAAACTAGA-------------------------------------TTTGA---GA-AC-TTTATGATTCAATCAGAAC----ACCAACTA---ACAGCA--------------GAAA--------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGATGAGCCATGAA-AAT-ACGACA-----TA---CTCTTTGT----TTAA---------AC----------ACGATGCCGAA-----AAT------G------TG-AAACT-------GA----TGAAAAGTTGGTACCC------TC-------CGT--C-T-------AAGTAAA-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCG---AA--------------AA-AAA----------------------CCGACTAACCCCGATTAAT-------A--AG----CCCGA--AAGC------TTCCAGCTAATTGAAAGT---------------------------------------------------TAGT-TTTAAGGACCTCT-CCCGA-------------------------------------------------------------TCTAAAGCCCAGTC----AA-C-T---GGG---CC-GACTTGAATGTTGTACCTGC---TAC----TTGATTGACCTTTTAT-T-----------GA----TTGATTG-
droKik1 scf7180000302390:366223-366619 + A--GTAGCAGAAA------ACCGT----------------------------------CATAACAAGCATAGA--------------------------------------------------TTTTATGATTCAATAAGACCAACCACCAACTAATAACAGCA--------------G----------------------CAGCA-----------CCA------CCACCTACA-------------------AGAAGAGCCATGAG-A---TCTACACAAAAA----ATCTA--TAAATGAAAACAAAAGATACCCATT-----TCGAACCAGAAAA-A-TGT------G------TA-GCGCA-------GATGAACAACCAGTTGGTACCCCTC--TTC-------TGTCTC-T-------AAGTACT-TGT---TGTTTGGATC---------------------TGC---------------------------CGCTGTGAAA-A---AAATAAA-GAAAATTGCA-------------------CCAACTAACCCCGATTAAT-------A--CCTCTTCCCAAAAAAGC------TTCCAGCTAACTGAAAGT---------------------------------------------------TAA---------------ACCC-A-------------------------------------------------------------AGTAAAACCCAGAA-----A-CTG-GGAGGATCTT-GAATTGAATGTTGTACCCTGTGCTAC--TGTTGATTGATTAT-----T---------------GAC---TTGA
droAna3 scaffold_12911:4580184-4580579 - A--ATCCCCAACA------ACA-------------------------------------AGAATAAA---------------------------------------ATGTTTTAA---GACACTTTTGTGATTCAATAAGAAC---CAACAACTA---ACAGCA--------------GAA---------AATAAAACA-GCAGCA--------------------CCACCGACA-------------------A-CAGAGCCATGAA-TAC--GTAAA-----A----ATATT--T----AAAA-AGAAATATAC----------TCGATCCTGAAATAATAATGTAGCTCTGTATTCG-GCGCA-------GA----CGAACAGTTGGTACCC-----TTC-------TGT--A-T-----------AAT-TGT---TGTTT-GATCGTTTTTAAAAGTGTGCGATTCTGT---------------------------AGCCC---GA--------------AA-ATAG---------------------CCCCCTAAC-CACATTAAT-------AA-AA----TCTGA-AAAGC------TTATAGATA--TGA--------------------------------------------------------------TAAAGACTATCGCAT-A-------------------------------------------------------------CACAAAACCCAACA----AC-T-T-TGGGG---AT-GCCTTGAATGTTGTATCTTC---CCC----TTGACTGAACCTTTATTT---ACAT----AT----TTGATTG-
droBip1 scf7180000396640:1422863-1423249 - A--TAATCC----------CCA-------------------------------------ACAGCAAGCATAA---------------------------------AATGTTTTAA---GACACTTTTGTGATTCAATAAGAAC---CAACAACTA---ACAGCA--------------GAA---------AATAAAACA-GCAGCA--------------------CCACCGACA-------------------T-CAGAGCCATGAA-TAT--ATAAA-----A----A-ATA--T----AAAT---------AC----------TCGATCCTGAAATAATAGTGTAGCTCTGCATTCG-GCGCA-------GA----CGAACAGTTGGTACCC-----TTC-------TGT--A-T-----------ACT-TGT---TGTTT-GATCGTTTTTTAAAGTGTGCCATTCTGT---------------------------AGCTG---AA--------------AA-ATAG---------------------CCCCCTAA-CCATATTAAT-------AA-AA----TCCGA-AAAGC------TTATAGATA--TGA--------------------------------------------------------------TAAGAAAAT-CGCAT---------------------------------------------------------------TGTAAAACCGAACA----AT-T-T-CGGGG---AT-GCCTTGAATGTTGTATCTTC---CCC----CTGACTGAACCCTTATTT---ACAT----AA----TTGATTG-
dp5 2:1128928-1129315 - A--ACAATTAAAA------TA-CT-------------------------------CAAAGTAGCGAACATAA------------------------------TAGAATG-TTTGA---CACAATTTCATAATTCAATAAGAAC-------AACTA---ACAGTA--------------GCA---------GGAG---CA-GCAGCA--------------------GCAGCAACAGCAACAGCAGC----------AGCCT-CA-----------------------------------------------------------------------------TCGTGT----G-TCCT-------TC-------GG----CGAACAGTTGGTACTC-----TC-CTTCTTCTGT--C-T-------AAGTACTTTGATGTTGTTG-CAGC---------------------AGC---------------------------AGCTCCCAAG-C---TAGTAAACGAC-TAA-CCCGAATAATCCCCAGACTA---A---------------------------A-----CTAT--AAGC------TTCCAGCGAA-------------------------------------------------------AACCCAGA-CTAAACGATCT---------------------GCGATCCTCTCTGTCTCGCTCTGGAGAGACACTACTATGTATCGCTGAACTAAAA--------------C-T---G------A-AACTTGAATGTTGTACCCGCTC--GATCCTTTGATT-----------TTG---ATGATTGT----TTAATTG-
droPer2 scaffold_7:3921824-3922217 - A--ACATTTAAAA------TA-CT-------------------------------CAAAGTAGCGAACATA-------------------------------TAGAATG-TTTGA---CACAATTTCATAATTCAATAAGAAC-------AACTA---ACAGTA--------------GCA---------GGGA---GCAGCAGCA--------GCAGCAACAGCAACAGCAACA------GCAGC----------AGCCT-CA-----------------------------------------------------------------------------TCGTGT----G-TCCT-------TC-------GG----CGAACAGTTGGTACTC-----TC-CTTCTTCTGT--C-T-------AAGTACTTTGATGTTGTTG-CAGC---------------------AGC---------------------------AGCTCCCAAG-C---TAGTAAACGAC-TAA-CCCGAATAATCCCCAGACTA---A---------------------------A-----CTAT--AAGC------TTCCAGCGAA-------------------------------------------------------AACCCAGA-CTAAACGATCT---------------------GCGATCCTCTCTGTCTCGCTCTGGAGAGACACTACTATGTATCGCTGAACTAAAA--------------C-T---G------A-AACTTGAATGTTGTACCCGCTC--GATCCTTTGATT-----------TTG---ATGATTGT----TTGATTG-
droWil2 scf2_1100000004943:9908483-9908914 + A--GGAACATAATTTAAAATA-CGTGAAATCTTAATCAAACCTTCAACTACAACATAAAACAGCGAACAA-------------------------CTTTAACTGAAATG-TTTAACGAATCCTTTTTATAATTCAATAAGCG---------AGGA---AGAGTATTTATATTCTTCGAACACAG-----AACCAGAACA-GCAGTA------------CAACAACAACAGCAACA------G-----------------AA-------------------------------------------------------------------------CAA-----TTT------C------CC-AAGCAA------AA----CGAATAGTGTGTACCCT----TTCTTTCTTAAGT--CATAAGCTAATAGTTAT-TGT---TGTT--GTTT---------------------AGC---------------------------AAACA---AT-G---TTGTCACCGAC-TAA-CCGAAAAAATGCCCAAAAAAATCAACTAATC----------------------------------GC------CTTCTACTAAA------------------------------------------------------AACTTTGA-AAAAGCAAACA-----------ATG-AAAGTTGCAAA-AAGATTCTTAGTTA----------------------------CCTACAGC-------------C-TAT-TGC---CT-ATATTGAATGTTATACCTAT---T-T----TTGATTGACTGA---C-T-----------GA----TTAATTG-
droMoj3 scaffold_6540:19476955-19477190 + A--GCAATATAAA------ATGAT-----------------------------------TTAAAAAATATATATTTAAAATTAAAATATAAATGCCATAGACCAAAATG-TCGAA---GCAATTTTTATAATTCAATAAAGGC---AGCATCACA---CGAACA--------------A---------------------------------------CAACAACAACCGCAACA------A----GATAAACAAGAATCCACTTGTA-AAA--CCA-------------------------------------------------------------------TCTAGCAAAGCTCTCA-GCGCCAAGCCATGT----CGAACAGTTGGTATCCAAAACTTT-------TAC--T-C-------AGTTCCT-TGT---TGTTC-GTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14830:4062529-4063043 - AAATTAGCAAACA----------------------------------------------ATTGCGAAGCCA---------------------------------AAATG-TTTAT---GCTCCTTTTATAATTCAACAAAAAA---CAACAA-------CAGCA--------------A------------------AA-GCAGACCCACCTGAGCAGGAACAAGAACCACAACA------GCAAAGCCAAACAACAATCTCCATGTA------------------------------------------------------------AATGTAGCA-----TA---------ACTTTCA-GCGCAAACCCATGT----CAAACAGTTGGTACCCAAA--CTC-------TTTTTC-T-------CAGCCTTTTGT---TGTTT-TTTG---------------------TGCCCTAAACAAAAATAATTACCCAAAAGCGGCTGCAAAG-CCTTTAACAAATG-------------------------------------CTTAACTAAT-------A--AC----CCTAA-GAAGCCACCGTTT--TGCTAGCTAAAAAAAATATAAAAAAAAGAATGATAAATCCCAAAATACTGCCCTAAAATAAACATAGAC-TTTAAGAACCGATGCTCGAACAATCTTGACTTGCGAG-CTGTTTTTTTTTTATTGGCC---GACTACTAAA---------AATTATACCCAAAAGGCGAACT-TTT-TGC---CTAGCCTTGAATGTTGTACCTATTG--AA----CTGATTGATTGA---T-T-----------TA----TTGATTG-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA--CTACA-----A----AAATA-------AGAA---------AC----------ACGATGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAGTTGGTACCC-----CTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGTT--------------------------------------------AAAAGTTAGT-CTTAAGGACCTCTGCCC-A-------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC--ATTG-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGT-CTTAAGGACCTCTGCCC-...........................................................................................................................................................................2312.00200200000000000000
................................................................................................................................................................................................................................................................................................................A---------AC----------ACGATGCAGAA-----TAT------C------TC-GAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTACCC-----CTC-------TGT--C-T-------AAGTAAT-TGT---............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................ACGATGCAGAA-----TAT------C------TC-GAACA-------GA----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AT------C------TC-GAACA-------GA----CGAAAAGTTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CCA........................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
droSec2
A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA--TTACA-----A----AAATA-------AGAA---------AC----------ACGATGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAGTTGGTACCC-----CTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGTT--------------------------------------------AAAAGTTAGT-CTTAAGGACCGTTGCCC-A-------------------------------------------------------------AATAAATCCAAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC--ATTG-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................TTGA---GACACTTTTATGATTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA--CTACA-----A----AAATA-------TGAA---------AC----------ACGATGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAGTTGGTACCC-----ATC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGTT--------------------------------------------AAAAGTTAGT-CTTAAGGACCTCTGCCCG--------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................ATGCAGAA-----TAT------C------TC-GAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................A--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA--C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TTCAGTAAGAAC---CGCCAACTA---ACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTTGA---GACACTTTTATGATTCAGTAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................A----AAATA-------TGAA---------AC----------ACGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CCGACA-------------------AGAAGAGCCATGAA-AAA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TAT------C------TC-GAACA-------GA----CGAAAAGTTGGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................GA----CGAAAAGTTGGTACCC-----A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CCGACA-------------------AGAAGAGCCATGAA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACCGACA-------------------AGAAGAGCCATGAA-AAA--CTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AATA-------TGAA---------AC----------ACGATGCAGAA-----TAT------C------TC-GAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................A-----TAT------C------TC-GAACA-------GA----CGAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TGAA---------AC----------ACGATGCAGAA-----TAT------C------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CAGTAAGAAC---CGCCAACTA---ACAGCA--------------GAA---------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-ATA----------------------CC.........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................ACAAACCTAGA-------------------------------------TTTGA---GACACTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GAA-....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-GATC---------------------TGC---------------------------AGCCA---AA-T-----------GA......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................AGA-------------------------------------TTTGA---GACACTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATCCCGATTAAT-------A--AC----CCCGA--AA...............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACCGACA-------------------AGAAGAGCCATGAA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................AT------C------TC-GAACA-------GA----CGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
............................................................................................................................TTTATGATTCAGTAAGAAC---CGCCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CCACCGACA-------------------AGAAGAGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TTCAGTAAGAAC---CGCCAACTA---ACAGCA--------------GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GATGCAGAA-----TAT------C------TC-GAACA-------GA----CGAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GA---GACACTTTTATGATTCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
droEre2
A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACGTAGA-------------------------------------TTTGA---GACACT-TTATGATTCAGTAAGAAC---CACCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGCAGAGCCATGAA-AAA--CTACA-----G----AAATA-------AAAA---------AC--ATGCAGAAACGATGCAGAA-----TAT------C------TG-AAACA-------GA----CGAAAAGTTGGTACCC-----CTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCGA---AA-A-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCAA-AAAGC------TTCCAGCTAATTGAAAGT---------------------------------------------------TAGT-CTTAAGGACCTCTGCCC-A-------------------------------------------------------------AATAAGGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGACTGT---T-T---------------GAC--ATTG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................GAAACGATGCAGAA-----TAT------C------TG-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT-GATC---------------------TGC---------------------------AGCGA---AA-A-----------GAA-....................................................................................................................................................................................................................................................................................................................................................2211.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAGGACCTCTGCCC-A-------------------------------------------------------------AATAAGGCCC...................................................................................................2811.0010100000
droYak3
A--GTAGCAGAAA------TCC-A-------------------------------AGAAATAACAAACGTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAGTAAGAGC---CACCAACTA---ACAGCA--------------GAA---------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGAGGAGCCATGAA-AAA--CTACC-----A----AAATA-------AAAA---------AC----------ACGATGCAGAT-----TAT------C------GC-AAACA-------GG----CGAAAAGTTGGTACCC-----CTC-------AGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCA---AA-C-----------GAA-ATA----------------------CCAACTAATCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTAAGAGT---------------------------------------------------TAGT-CTTAAGGACCTCCGCCC-A-------------------------------------------------------------CAAAAAGCCCAGAA----AA-C-T-G-GGG---CC-AACTTGAATGTTGTACCTGC---AAC----TTGATTGAATGT---T-T---------------GAC--ATTG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................AAGAGC---CACCAACTA---ACAGCA--------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACCTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAATAAGAAC---CACCAACTA---ACAGCA--------------GAGCAATAAGC-AATA---AG-CCAGCA--------------------CCACCGACA-------------------ACCAGAGCCATGAA-AAA-TCAACA-----AACAAAAATA-------TTAA---------AC----------ACGATGCAGAG-----TAT------C------TC-AAACA-------GA----CGAAAAGTTGGTATCC-----TTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCG---AAAA-----------G-A-ATA----------------------GCGATTAACCCCGATTAAT-------A--AC----CCCGA--AAGC------TTCCAGCTAATTGAAAGT---------------------------------------------------TAGT-CTTAAGGACCTCTGCCCGA-------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T---GGG---CC-CACTTGAATGTTGTACCTGC---TAC----CTGATTGACCGT---T-TTGTAC-TGATTGATTGAC--ATTG-SizeHit CountTotal NormTotal
No Reads
droBia1
A--GTAGCAGAAA------CCC-------------------------------------ATAACCAAACTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAATCAGAAC---CACCAACTA---ACAGCA--------------GAA---------ACTA---GA-GCAGCA--------------------CCACCGACAG------------------AGAAGAGCCATGAT-AAA-CCTACA-----A----AAATA-------TTGA---------AC----------ACGACGCAGAG-----TAT------C------CC-AAACA-------GA----GGAAAAGTTGGTACCC-----TTC-------TGT--C-T-------AAGTAAT-TGT---TGTGTTGATC---------------------TGC---------------------------GGCCG---AAAC-----------GAA-AAA-CC-------------------CCAATTAACCCAGAATATT-------A--AC-----CCGA--AAGC------TTCCAGCCAATTGAAAGT---------------------------------------------------TAGTGATTAAGGACCTTTGCCCGA-------------------------------------------------------------TGTGAAACCCAAAA----CA-C-T-T-GGG---CC-GACTTGAATGTTGTGCCTGC---TAC----CTGATCTATTGT---T-T---------------G-TTGAATG-SizeHit CountTotal NormTotal
No Reads
droTak1
A--GTAGCAGAAAA----ACCC-------------------------------------ATAACAAAACTAGA-------------------------------------TTTGA---GACACTTTTATGATTCAATCAGAAC---CACCAACTA---ACAGCA--------------GAAA--------AATAAAAAT-GCAGCA------------CA------CCACCGACAG------------------AGAAGAGCCATGAATAAA-CCTACAAAA--A----ATATATA-----TTAA---------AT----------ACGAAGCAGAA-----TCT------C------TCGAAACA-------GATC--AAAAAAGTTGGTATCCC-C--TTC-------TGT--C-T-------AAGTAAT-TGT---TGTGTTGATC---------------------TGC---------------------------AGCCG---AAAA-----------GAA----------------------------AATTAACCCTGATTAATAATTAATA--AC----CCCGAAACAGC------TT-------------------------------------------------------------------TAGTGTTTAAGGACCTTTGCCCGA-------------------------------------------------------------AATAAAGCCCAAAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGCTA--CC----TTTCTTGATTGT---T-TTATAC---ATTGA----TTGATTG-SizeHit CountTotal NormTotal
No Reads
droEle1
A--GTAGCAGAAA------CCC-------------------------------------ACAACAAACATAG---------------------------------------------------TTTTATGATTCAATAAGAAC---CAACAACTA---ACAGCA--------------GAA---------ATGAAAAAT-GAAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAAATCTACA-----G----ATATATAT----AAAA---------AC----------ACGATGCAAAA-----TAT------G------TG-AAACA-------GA----TGAAAAGTTGGTACCC-----TTC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------GACCG---AA-A-----------GA--ATA----------------------CCAACTAACCCTGAACAAT-------ATAAC----CCCAA--AAGC------TTCCACCTAATCGAAAGT---------------------------------------------------TAAT-CTTAAGGACCCTTGCCCGA-------------------------------------------------------------AATAAAGTCCAGAA----AG-C-T-T-GGG---CC-GACTTGAATGTTGTACCTGC---TAC----TTGATTGACTGT---T-T---------------GAT--ATTG-SizeHit CountTotal NormTotal
No Reads
droRho1
A--GTAGCAGAAA------CCC-------------------------------------ATAACAAACATAGT-------------------------------------TTTGA---GACACTTTTATGATTCAATAAGAAC---CACCAACTA---ACAGCA--------------AAA---------A--A---AA-GCAGCA--------------------CCACCGACA-------------------AGAAGAGCCATGAA-AAA-TCTACA-----A----ATATA--T----AAAA---------AC----------ACGACGCAGAA-----TAT------G------TG-AAACA-------GA----TGAAAAGTTGGTACAA-----TCC-------TGT--C-T-------AAGTAAT-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCG---AA-A-----------GA--ATA----------------------CCAATTAACCCTGAATAAT-------A--AC----CCCGA--AAGC------TTCCACCTAATTGAAAGT---------------------------------------------------TAAT-CTTAAGGACATTTGCCCGA-------------------------------------------------------------AATAAAGCCCAGAA----AA-C-T-T-GGG---CC-AACTTGAATGTTGTACCTGC---TAC----TTGACTGACTGT---T-T---------------TAT--ATTG-SizeHit CountTotal NormTotal
No Reads
droFic1
A--GTAGCAGAA-------CCC-------------------------------------ATAACAAAACTAGA-------------------------------------TTTGA---GA-AC-TTTATGATTCAATCAGAAC----ACCAACTA---ACAGCA--------------GAAA--------AATA---AA-GCAGCA--------------------CCACCGACA-------------------AGATGAGCCATGAA-AAT-ACGACA-----TA---CTCTTTGT----TTAA---------AC----------ACGATGCCGAA-----AAT------G------TG-AAACT-------GA----TGAAAAGTTGGTACCC------TC-------CGT--C-T-------AAGTAAA-TGT---TGTTT-GATC---------------------TGC---------------------------AGCCG---AA--------------AA-AAA----------------------CCGACTAACCCCGATTAAT-------A--AG----CCCGA--AAGC------TTCCAGCTAATTGAAAGT---------------------------------------------------TAGT-TTTAAGGACCTCT-CCCGA-------------------------------------------------------------TCTAAAGCCCAGTC----AA-C-T---GGG---CC-GACTTGAATGTTGTACCTGC---TAC----TTGATTGACCTTTTAT-T-----------GA----TTGATTG-SizeHit CountTotal NormTotal
No Reads
droKik1
A--GTAGCAGAAA------ACCGT----------------------------------CATAACAAGCATAGA--------------------------------------------------TTTTATGATTCAATAAGACCAACCACCAACTAATAACAGCA--------------G----------------------CAGCA-----------CCA------CCACCTACA-------------------AGAAGAGCCATGAG-A---TCTACACAAAAA----ATCTA--TAAATGAAAACAAAAGATACCCATT-----TCGAACCAGAAAA-A-TGT------G------TA-GCGCA-------GATGAACAACCAGTTGGTACCCCTC--TTC-------TGTCTC-T-------AAGTACT-TGT---TGTTTGGATC---------------------TGC---------------------------CGCTGTGAAA-A---AAATAAA-GAAAATTGCA-------------------CCAACTAACCCCGATTAAT-------A--CCTCTTCCCAAAAAAGC------TTCCAGCTAACTGAAAGT---------------------------------------------------TAA---------------ACCC-A-------------------------------------------------------------AGTAAAACCCAGAA-----A-CTG-GGAGGATCTT-GAATTGAATGTTGTACCCTGTGCTAC--TGTTGATTGATTAT-----T---------------GAC---TTGASizeHit CountTotal NormTotal
No Reads
droAna3
A--ATCCCCAACA------ACA-------------------------------------AGAATAAA---------------------------------------ATGTTTTAA---GACACTTTTGTGATTCAATAAGAAC---CAACAACTA---ACAGCA--------------GAA---------AATAAAACA-GCAGCA--------------------CCACCGACA-------------------A-CAGAGCCATGAA-TAC--GTAAA-----A----ATATT--T----AAAA-AGAAATATAC----------TCGATCCTGAAATAATAATGTAGCTCTGTATTCG-GCGCA-------GA----CGAACAGTTGGTACCC-----TTC-------TGT--A-T-----------AAT-TGT---TGTTT-GATCGTTTTTAAAAGTGTGCGATTCTGT---------------------------AGCCC---GA--------------AA-ATAG---------------------CCCCCTAAC-CACATTAAT-------AA-AA----TCTGA-AAAGC------TTATAGATA--TGA--------------------------------------------------------------TAAAGACTATCGCAT-A-------------------------------------------------------------CACAAAACCCAACA----AC-T-T-TGGGG---AT-GCCTTGAATGTTGTATCTTC---CCC----TTGACTGAACCTTTATTT---ACAT----AT----TTGATTG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
A--TAATCC----------CCA-------------------------------------ACAGCAAGCATAA---------------------------------AATGTTTTAA---GACACTTTTGTGATTCAATAAGAAC---CAACAACTA---ACAGCA--------------GAA---------AATAAAACA-GCAGCA--------------------CCACCGACA-------------------T-CAGAGCCATGAA-TAT--ATAAA-----A----A-ATA--T----AAAT---------AC----------TCGATCCTGAAATAATAGTGTAGCTCTGCATTCG-GCGCA-------GA----CGAACAGTTGGTACCC-----TTC-------TGT--A-T-----------ACT-TGT---TGTTT-GATCGTTTTTTAAAGTGTGCCATTCTGT---------------------------AGCTG---AA--------------AA-ATAG---------------------CCCCCTAA-CCATATTAAT-------AA-AA----TCCGA-AAAGC------TTATAGATA--TGA--------------------------------------------------------------TAAGAAAAT-CGCAT---------------------------------------------------------------TGTAAAACCGAACA----AT-T-T-CGGGG---AT-GCCTTGAATGTTGTATCTTC---CCC----CTGACTGAACCCTTATTT---ACAT----AA----TTGATTG-SizeHit CountTotal NormTotal
No Reads
dp5
A--ACAATTAAAA------TA-CT-------------------------------CAAAGTAGCGAACATAA------------------------------TAGAATG-TTTGA---CACAATTTCATAATTCAATAAGAAC-------AACTA---ACAGTA--------------GCA---------GGAG---CA-GCAGCA--------------------GCAGCAACAGCAACAGCAGC----------AGCCT-CA-----------------------------------------------------------------------------TCGTGT----G-TCCT-------TC-------GG----CGAACAGTTGGTACTC-----TC-CTTCTTCTGT--C-T-------AAGTACTTTGATGTTGTTG-CAGC---------------------AGC---------------------------AGCTCCCAAG-C---TAGTAAACGAC-TAA-CCCGAATAATCCCCAGACTA---A---------------------------A-----CTAT--AAGC------TTCCAGCGAA-------------------------------------------------------AACCCAGA-CTAAACGATCT---------------------GCGATCCTCTCTGTCTCGCTCTGGAGAGACACTACTATGTATCGCTGAACTAAAA--------------C-T---G------A-AACTTGAATGTTGTACCCGCTC--GATCCTTTGATT-----------TTG---ATGATTGT----TTAATTG-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................AACTA---ACAGTA--------------GCA---------GGAG---CA-GCAGCA--------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010000
...................................................................................................................................................................................................................................................................................................................................................................CT-------TC-------GG----CGAACAGTTGGTACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................AGTA--------------GCA---------GGAG---CA-GCAGCA--------------------GCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000001
.........................................................................................................................................................................................................CAGCA--------------------GCAGCAACAGCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
A--ACATTTAAAA------TA-CT-------------------------------CAAAGTAGCGAACATA-------------------------------TAGAATG-TTTGA---CACAATTTCATAATTCAATAAGAAC-------AACTA---ACAGTA--------------GCA---------GGGA---GCAGCAGCA--------GCAGCAACAGCAACAGCAACA------GCAGC----------AGCCT-CA-----------------------------------------------------------------------------TCGTGT----G-TCCT-------TC-------GG----CGAACAGTTGGTACTC-----TC-CTTCTTCTGT--C-T-------AAGTACTTTGATGTTGTTG-CAGC---------------------AGC---------------------------AGCTCCCAAG-C---TAGTAAACGAC-TAA-CCCGAATAATCCCCAGACTA---A---------------------------A-----CTAT--AAGC------TTCCAGCGAA-------------------------------------------------------AACCCAGA-CTAAACGATCT---------------------GCGATCCTCTCTGTCTCGCTCTGGAGAGACACTACTATGTATCGCTGAACTAAAA--------------C-T---G------A-AACTTGAATGTTGTACCCGCTC--GATCCTTTGATT-----------TTG---ATGATTGT----TTGATTG-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................AGCAACAGCAACAGCAACA------GCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droWil2
A--GGAACATAATTTAAAATA-CGTGAAATCTTAATCAAACCTTCAACTACAACATAAAACAGCGAACAA-------------------------CTTTAACTGAAATG-TTTAACGAATCCTTTTTATAATTCAATAAGCG---------AGGA---AGAGTATTTATATTCTTCGAACACAG-----AACCAGAACA-GCAGTA------------CAACAACAACAGCAACA------G-----------------AA-------------------------------------------------------------------------CAA-----TTT------C------CC-AAGCAA------AA----CGAATAGTGTGTACCCT----TTCTTTCTTAAGT--CATAAGCTAATAGTTAT-TGT---TGTT--GTTT---------------------AGC---------------------------AAACA---AT-G---TTGTCACCGAC-TAA-CCGAAAAAATGCCCAAAAAAATCAACTAATC----------------------------------GC------CTTCTACTAAA------------------------------------------------------AACTTTGA-AAAAGCAAACA-----------ATG-AAAGTTGCAAA-AAGATTCTTAGTTA----------------------------CCTACAGC-------------C-TAT-TGC---CT-ATATTGAATGTTATACCTAT---T-T----TTGATTGACTGA---C-T-----------GA----TTAATTG-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................AAGCG---------AGGA---AGAGTATTTATATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...............................................................................................................................ATAATTCAATAAGCG---------AGGA---AGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................................................................................................................................................................................AG-----AACCAGAACA-GCAGTA------------CAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
..........................................................AACAGCGAACAA-------------------------CTTTAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
droMoj3
A--GCAATATAAA------ATGAT-----------------------------------TTAAAAAATATATATTTAAAATTAAAATATAAATGCCATAGACCAAAATG-TCGAA---GCAATTTTTATAATTCAATAAAGGC---AGCATCACA---CGAACA--------------A---------------------------------------CAACAACAACCGCAACA------A----GATAAACAAGAATCCACTTGTA-AAA--CCA-------------------------------------------------------------------TCTAGCAAAGCTCTCA-GCGCCAAGCCATGT----CGAACAGTTGGTATCCAAAACTTT-------TAC--T-C-------AGTTCCT-TGT---TGTTC-GTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................GCTCTCA-GCGCCAAGCCATGT----C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
AAATTAGCAAACA----------------------------------------------ATTGCGAAGCCA---------------------------------AAATG-TTTAT---GCTCCTTTTATAATTCAACAAAAAA---CAACAA-------CAGCA--------------A------------------AA-GCAGACCCACCTGAGCAGGAACAAGAACCACAACA------GCAAAGCCAAACAACAATCTCCATGTA------------------------------------------------------------AATGTAGCA-----TA---------ACTTTCA-GCGCAAACCCATGT----CAAACAGTTGGTACCCAAA--CTC-------TTTTTC-T-------CAGCCTTTTGT---TGTTT-TTTG---------------------TGCCCTAAACAAAAATAATTACCCAAAAGCGGCTGCAAAG-CCTTTAACAAATG-------------------------------------CTTAACTAAT-------A--AC----CCTAA-GAAGCCACCGTTT--TGCTAGCTAAAAAAAATATAAAAAAAAGAATGATAAATCCCAAAATACTGCCCTAAAATAAACATAGAC-TTTAAGAACCGATGCTCGAACAATCTTGACTTGCGAG-CTGTTTTTTTTTTATTGGCC---GACTACTAAA---------AATTATACCCAAAAGGCGAACT-TTT-TGC---CTAGCCTTGAATGTTGTACCTATTG--AA----CTGATTGATTGA---T-T-----------TA----TTGATTG-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................GACCCACCTGAGCAGGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.................................................................................................................................................................................................................................................GCAAAGCCAAACAACAATCTCCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
..................................................................................................................................................................................................................................................CAAAGCCAAACAACAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110

Generated: 05/18/2015 at 01:01 PM