ID:

dsi_12528

 Coordinate:

2l:3359408-3359642 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.5 -35.5 -35.5 -35.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACCGGAGACCATGTACGGACTGGCCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTAAAGTCAACCACAGAAAAAGAACCCATTTGCCATTCCACAAAGGTGATGTATATACCGTTATCAACAATTTTTGCTCTCTCTCTGTGTGAAATTTTGATCATGGGAATCTCGCCCGAAACCGAATCCAAATCCGTGCTTCCATCCATTCCCATTCTCATTGTGTGTCCGTCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTTCTCCTCCTTCTGGGCTCTTATAGTCAACCTAAAGTTCGACACCAGCGAACTGGAGGATGCGACGGCGTCGAGT
**************************************************.....((((((....((.(((((...((...............((((...(((.((.((((((((....((((((...........................(((..((((((((..........((.((.......)).))..........))))))))..))))))).)).....))))))))..)).)))....))))...............)).)))))))..))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
....AAGAGCATGTACGGACTGGCGAA.................................................................................................................................................................................................................................................................................................................... 23 3 1 2.00 2 0 2 0 0 0 0
..........ATGTACGGACTGGCCAAGAAGCTGGGACCG....................................................................................................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................................................................................................................TATCTCGATATGCTGTGTGCCTCTCTC............................................................................ 27 0 1 1.00 1 0 0 1 0 0 0
................................TGGGACCGCTGGACAAAC............................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................................CTCGATATGCTGTGTGCCTCT............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GAACTGGAGGATGCGACGGCGA..... 22 1 1 1.00 1 0 0 0 1 0 0
.......ACCATGTACGGACTGGCC...................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
....AAGAGCATGTACGGACTGGCGA..................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................TCTCTGTGTGTTATTTTGATCTT................................................................................................................................................................................ 23 3 2 0.50 1 1 0 0 0 0 0
.............TACCGACTTGCCAAGA.................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1
.............................................................................................................................................................................................................................GTCGGTCGGGGTATCT.................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0
...................ATGGCCAAGAAGCTGG............................................................................................................................................................................................................................................................................................................ 16 1 20 0.05 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................................GAGGATGCGACGGTGGC.... 17 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TGGCCTCTGGTACATGCCTGACCGGTTCTTCGACCCTGGCGACCTGTTTGCACTCAATTTCAGTTGGTGTCTTTTTCTTGGGTAAACGGTAAGGTGTTTCCACTACATATATGGCAATAGTTGTTAAAAACGAGAGAGAGACACACTTTAAAACTAGTACCCTTAGAGCGGGCTTTGGCTTAGGTTTAGGCACGAAGGTAGGTAAGGGTAAGAGTAACACACAGGCAGCCACATAGAGCTATACGACACACGGAGAGAGGAAGAGGAGGAAGACCCGAGAATATCAGTTGGATTTCAAGCTGTGGTCGCTTGACCTCCTACGCTGCCGCAGCTCA
**************************************************.....((((((....((.(((((...((...............((((...(((.((.((((((((....((((((...........................(((..((((((((..........((.((.......)).))..........))))))))..))))))).)).....))))))))..)).)))....))))...............)).)))))))..))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................................................................................CACAGTCTGCGACATAGAGCT............................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................AGGCACGAAGGAATGTAAGGT............................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0
...................................CTGGCGAGCTTATTGCACTC........................................................................................................................................................................................................................................................................................ 20 3 8 0.25 2 0 0 2 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CTTGACCGACGACGCTGCCGC...... 21 3 16 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................................................TTAAATCTAGGACCCTT........................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................GAGGAAGGCCCGACACTAT................................................... 19 3 19 0.05 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................AGGGCTTTGGCTTAG........................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CAGTGTTCGCTTGGCCTCC................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................GTAGGTAAGAGGAAGACTAA...................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................GGGTGAGAGTACCACA.................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:3359358-3359692 - dsi_12528 ACCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--A---------------------------------------GA----AAAAGAACCCATTT------GCCATTCCAC-AAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTAAAGTTCGACACCAGCGAACTGGAGGATGCGACGG---------CGTCGAGT----------------------
droSec2 scaffold_5:1601995-1602331 - ACCGGAGACCATGTACGGACTTGGCCCAAGAAGCTGGGACCGATGGACAAACGTGAGTAA-AAGTCAAC-CAC--A---------------------------------------GA----AAAACAACCCATTT------GTCATTCCAC-AAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACACCAGCGAACTGGAGGATGCGACGG---------CGTCGAGT----------------------
dm3 chr2L:3499714-3500050 - ACCGGAGACAATGTACGGACT-CG-CCAAAAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--A-------------------GA------------------AA----AAAACAACCCATTT------GTCATTCCAC-AAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAACTGGAGGATGCGACGG---------CGTCGAGT----------------------
droEre2 scaffold_4929:3534689-3535061 - GCCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--ACCCACACACAACAAAAAAA-A------------------AA----AAACGAACCCATTT------GCCATGTCAC-TAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GAAACCGAATCCAAATCCAAATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------GCATTCGCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAACGAGCTGGAGGATGGGACGC---------CGACGACC----------------------
droYak3 2L:3488173-3488522 - dya_214 GCCGGAGACCATGTATGGGTT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--A-------------------TT------------------GA----ACAACAACCCATTT------GTCATGTCAC-TAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTACTC-TCTC-----TCTGT--GTGTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------TA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCAAATCCGTGCCGTGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCGACGA---------CGACGAGT----------------------
droEug1 scf7180000409554:2588790-2589124 + CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCTTGGACAAACGTGAGTTG-AAGTCATCCC--ACA---------------------------------------CA----AAAACAACCTCTCA------GTCATGTTTC--AAGGTGA-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTA---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------CACTTCCAT------CCACTCCCA-----------------------------------------------------------------------------------------------------------------------------------ATCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-TCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGCGAGCTGGAGGATGCCACGG---------CATCCAGT----------------------
droBia1 scf7180000302261:1049739-1050072 - GCCGGAGACAATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AACTCATCCC--ACT---------------------------------------CAAAAAAAAGAAA-----CT------GTCATGTCGC-AAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTACTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TACTTCCGT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTT-TGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAGCTGGAGGACGCCACGG---------CGGCGAGT----------------------
droTak1 scf7180000415438:404574-404917 + ACCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AAGTCATCCC--ACA---------------------------------------CAAAAAATATC-----ACCT------GTCATGTTGCAAAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTACTC-TCTC-----TCTGT--GCGTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GC------------------ATCC-ATA-T----------------------------------------CCG-----------TACTTCCGTCCCATTCCGTGCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCGACGG---------CGGCGAGT----------------------
droEle1 scf7180000490728:173090-173406 - GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AATTCAAC-CCCGC-------------------------------------------------------TACCT------ATCATGTCGCATAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC------------------G------AA--TCC-------GA------------------ATCC-CAA-T----------------------------------------CCG-----------TACTTCCAT------GCACTCGCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTTC----------------------CCT--------CT-TCTCCATCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGTGTGCTGGAGGATGCCACCG---------CGTCGAGT----------------------
droRho1 scf7180000779523:180561-180900 - GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AAGTCATCCC--ACA---------------------------------------CAAAAAAAAACAACCTACCT------GTCATGTCGC-AAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TACTGCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATCGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTTTCTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAAGATGCCACCG---------CGGCGAGT----------------------
droFic1 scf7180000453924:1485538-1485885 - CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTG-AACTCATCCC--ACA------AACGA---AAAAA--------------------AA----AAAACATC----CT------GTCATGTTGC-AAAGGTGA-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCGCACTCGAA--TTC-------GA------------------ACCC-GAT-C----------------------------------------CCG-----------TGTCTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGCTTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCGTCCTCAAGTTCGACCCCAGCGAGCTGGAGGATGCCACCG---------CGGCGAGT----------------------
droKik1 scf7180000302270:1141911-1142117 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC-TTTC-----TCTGT----GTG---------------AATT--TTTGATCATGGAAAT--CTCGCCCCG------TA--TCT-------GA------------------ATCCGAAA-C----------------------------------------CTG-----------AATCTCCATT-----CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATCGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTGCAACTCAAGTTCGACAGCAGCGACCTGGAGGATGCCACAG---------CCGCGAGT----------------------
droAna3 scaffold_12916:5546795-5547164 - GCCGGAGACGATGTACGGATT-GG-CCAAGAAACTGGGTCCAATGGATAAACGTGAGTTTCAAGTCATACC--ATACC---ATACCATA-----------------AAGTCTAGAGA----AAAAGA--------------GTCATGT--C-AAAGGTGA-TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTGTGGTGTGTGT----GTG---------------AAAT--TTTGATCATGGAAAC--ATC------------------CATTATTGGAAA---------------------------------------CTCGATAACCTCTCAAAAAACCCATATCCA--------------TTCCA------------CCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTCATGATTGTGTGTC--------------------------------CT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTTTCT-------------------------------CTGCCTCGTTCTGGACTCTTGTAGTGACCCTGAAGTTCGATGCCTGCGACCTGGAGGATGCCACTG---------CGGCGAGT----------------------
droBip1 scf7180000396568:1291260-1291633 + GCCGGAGACGATGTACGGACT-GG-CCAAGAAACTGGGTCCAGTGGATAAACGTGAGTTTCAAGTCAAACC--ATACC---GTACCATA------AA------------------GA----AAAAAAAGTCA---------GTCATGT--C-AAAGGTGA-TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTCTGGTTTGTGT----GTG---------------AAAT--TTTGATCATGGAAACATC-CG-CCCG------AACATCCGTTATTGGAAA---------------------------------------CTCGATAACCGCT------ATCCATATCCA--------------TTCCA------------CCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTCATGATTGTGTGTC--------------------------------CT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTTTCT-------------------------------CTGCCTCGTTCTGGACTCTTGTAGTGACCCTAAAGTTTGATGCCTGCGACCTGGAGGATGCCACTG---------CGGCGAGT----------------------
dp5 4_group3:5247446-5247862 + dps_1564 CGCGGCGCAGATGTACGGGAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCC---CAC--A-------------------GATCCCCCGTCCCGCCTCCA---TCCAAAACGTCCTACATTTTACTCAAATGTTGT-TGAGGTGATTGTAT-AGACCGTGTTATCAAATATATTTTGCTC-ATGC-----TC--------CA---------------AAAT--TTTGATCATGGGAAT--C-CG-CCTG------AG--ACC-------GC------------------CTCC-AGTCTCCCCACCTGCCCACCTGAC--------CACCTGCCCCCCTACC-----------TG---------------CCTCACT-----------------------------------------------------------------------------------------------------------------------------------CTCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCCTT----------------------------------TC-TCGCCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCTGCGGCCAGT---GCGGCGGCCAGTGCTGCAT
droPer2 scaffold_1:6739298-6739714 + CCCGGCGCAGATGTACGGAAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCC---CAC--A-------------------GATCCCACTTCCCGTCTCCA---TCCGAAACGTCCTACATTTTACTCAAATGTTGT-TGAGGTGATTGTAT-AGACCGTGTTATCAAATATATTTTGCTC-ATGC-----TC--------CA---------------AAAT--TTTGATCATGGGAAT--C-CG-CCTG------AG--ACC-------GC------------------CTCC-AGTCTCCCCACCTGCCCACCTGAC--------CACCTGCCCCCCTACC-----------TG---------------CCTCACT-----------------------------------------------------------------------------------------------------------------------------------CTCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCCTT----------------------------------TC-TCGCCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCTGCGGCCAGT---GCGGCGGCCAGTGCTGCAT
droWil2 scf2_1100000004521:8974003-8974387 - ACCAGAGACCATGTACGGTTT-GG-CCAAGAAGCTGGGACCAATGGATAAACGTGAGTTA-CATTCGAC-CCCACT---------------------------------------CAAAAAAT--------ATATATCA--ATCAA--TAT-AAAGGTTA-TGTAT-ATACCG--GTATCAATA------TGATT----------TTTAT----GTGAACATTTCGGATCTAAAATTGTTTGATTATGGGAAT--C-------------------------------------------------------A-T----------------------------------------CCT-----------TACTTACTT------TCATTAT--------------------------------------------------------------------------------------------------------------------------------------TT-----TTTGTGTGT----GGTTTTTTCATGTTCACTCTATGTGTGTTGTCCAATCGGTGTATTTCGATATGCTCTGTGGCTTTCTTTTC--TCGTCTTTTCTTTTTCCCTTCTCTCTTCTCCTTTGTTTCGTTCTTA-TCCTTATAGTGCACATAAAATTTGATGCCAGCGAATTGGAAGATGCCACAT---------CTTTGGCCAGT-------------------
droVir3 scaffold_12963:15282339-15282719 + dvi_12016 TCCGGAAACGATGTATGGGCT-GG-CAAAGAAGCTGGGACCGTTGGATAAACGTGAGTTG-AACTCATACC--AAT---------------------------------------CT--------------------------AAGAT--T-AAAGGTGA-TGTAT-ATACCG--TTATCAATAAT-TTTGGCTC-TCTA-----TGTTGATGACAC---------------AAAT--TTTGATTATGGGAAT--CTCG-CCCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------TCGCATCGTCAATA-----------------------------------------CGCACAAAATATC------------AAACAATTCCATTTGCATGAACCCCATTTCATACCCACCCCGCCCCCTAAAAATTTCTCTG---ACTGTGGCTGAATG----------------------TGTG--TGTCAATCGGTGTATTTCGATATGCTCTGTGCCTCTCT--TT----------------------------------CT-CCTCATTTTCGGCTCTTATAGTGACGCTCAAGTTTGATCCTCGCGATCTGGAGGATGCTCCC----------------------------------------
droMoj3 scaffold_6500:18259014-18259418 + GCCGGAGACGATGTTCGGGCT-GG-CCAAGAAGCTGGGGCCGTTGGATAAACGTGAGTTA---------------------------------------------------------------------------------CTCAAAT--T-GAAGGTGA-TGTAT-ATACCG--TTATCAATAAT-TTTTGCTC-TCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAAT--CTCG-CCCG--------------------------------------------------------------------------------------------------------------CAT------CCACTCGCAACGTCATTTCATTTTCTTCAACCTAACGTATATCGCTGTACTAATCTATGCGC----CATGTCTAACTCTCCTGAAATCTATTCCGCTTGCAT---------CTCACA---------------AAACATCTCTCTC---ACTGTGGCTGTGTG----------------------TGTC--TGTTAATCGGTGTATTTCGATATGCTCTGTGCCTCTCTCCTC--T--------------------G----------CT-CCTCATTTTCGGCTCTTATAGTGACGCTCAAATTCGATCCCAGCGAGCTGGAGGAGACGCCCT---------CGTCGAGCGCC-------------------
droGri2 scaffold_15126:4129973-4130136 - GCCAGAGACGTTGTATGGTCT-GG-CTAAGAAACTGGGATCATTGGATAAACGTGAGTTA-AACCCTAACC--ACT---------------------------------------C------------------T------ATCAAATTGAAAAAGGTGA-TGTAT-ATACCG--TTATCAATAAT-TTTTGCTC-TCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAAT--ATCG-CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--A---------------------------------------GA----AAAAGAACCCATTT------GCCATTCCAC-AAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTAAAGTTCGACACCAGCGAACTGGAGGATGCGACGG---------CGTCGAGT----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........ATGTACGGACT-GG-CCAAGAAGCTGGGACCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTCGATATGCTGTGTGCCTCTCTC..............................................................................................................................................2711.00100000010000000000
..................................TGGGACCGCTGGACAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATATGCTGTGTGCCTCT.................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAGGATGCGACGG---------CGA...........................2211.00100000000000001000
.......ACCATGTACGGACT-GG-CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
droSec2
ACCGGAGACCATGTACGGACTTGGCCCAAGAAGCTGGGACCGATGGACAAACGTGAGTAA-AAGTCAAC-CAC--A---------------------------------------GA----AAAACAACCCATTT------GTCATTCCAC-AAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACACCAGCGAACTGGAGGATGCGACGG---------CGTCGAGT----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGAGGATGCGACGG---------C.............................1913.0030201
............................AGAAGCTGGGACCGATGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGT......................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGAGGATGCGACGG---------..............................1811.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAGCGAACTGGAGGATGC............................................2311.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGT................................................................................2811.0010100
...........................AAGAAGCTGGGACCGATGGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCAGCGAACTGGAGGATGCGAC.........................................2711.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGAGGATGCGACGG---------C.............................2011.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACACCAGCGAACTGGAGGATGC............................................2511.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTGTC--------------------------------CG----TCGGTGTATCT....................................................................................................................................................................2311.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGAACTGGAGGATGCGACG........................................2311.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCGAACTGGAGGATGCGAC.........................................2511.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGAACTGGAGGATGCGAC.........................................2211.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTTCTGGGCTCTTATAG.................................................................................2011.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAACTGGAGGATGCGACGG---------C.............................2311.0010100
..................................TGGGACCGATGGACAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACACCAGCGAACTGGAGGATGCGAC.........................................2811.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCAGCGAACTGGAGGATG.............................................2311.0010100
dm3
ACCGGAGACAATGTACGGACT-CG-CCAAAAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--A-------------------GA------------------AA----AAAACAACCCATTT------GTCATTCCAC-AAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAACTGGAGGATGCGACGG---------CGTCGAGT----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCAGTGAACTGGAGGATGCGAC.........................................26110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................CAAAAAGCTGGGACCGCTGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAAAGCTGGGACCGCTGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGACGCCAGTGAACTGGAGGATGC............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTGGGACCGCTGGACAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGCCAGTGAACTGGAGGATGCGA..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTGGAGGATGCGACG........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGAGGATGCGACGG---------CGTC..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACTGGAGGATGCGAATC---------..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGCCAGTGAACTGGA..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGC............................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................AAAAAGCTGGGACCGCTGGACAAACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGCCAGTGAACTGGAGG................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AATGTACGGACT-CG-CCAAAAAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................T------GTCATTCCAC-AAAGGTGA-TGTAT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TG---------------AAAT--TTTGATCATGGGAAT--C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTC---ATTGTGTGTC--------------------------------CG----TC.............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..........ATGTACGGACT-CG-CCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AAAGGTGA-TGTAT-ATACCG--TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................T--TTTGATCATGGGAAT--CTCG-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCTGGGACCGCTGGACAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTGGAGGATGCGACGG---------..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTGAACTGGAGGATGCGA..........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACCGGAGACAATGTACGGACT-CG-CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GTACGGACT-CG-CCAAAAAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTGGAGGATGCGACGG---------CGTCG.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCG..................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................T----------------------------------------CCG-----------TGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACTGGAGGATGCGAC.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......GACAATGTACGGACT-CG-C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAGTGAACTGGAGGATGCGAC.........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAGTGAACTGCT..................................................1860.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCCGGAGACCATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--ACCCACACACAACAAAAAAA-A------------------AA----AAACGAACCCATTT------GCCATGTCAC-TAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--ACC-------GAAACCGAATCCAAATCCAAATCC-AAA-T----------------------------------------CCG-----------TGCTTCCAT------GCATTCGCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAACGAGCTGGAGGATGGGACGC---------CGACGACC----------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAACGAGCTGGA..................................................1812.0021000010
.............................GAAGCTGGGACCGCTGGACAAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......GACCATGTACGGACT-GG-CCAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCTGGAGGATGGGAC.........................................2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGACGCCAACGAGCTGGAGGATG.............................................2611.0011000000
.................GACT-GG-CCAAGAAGCTGGGACCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGGGCTCTTATAGT................................................................................1911.0010000010
...................CT-GG-CCAAGAAGCTGGGACCGCTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...........................................................................................................................................................................................TTTTGCTC-TCTC-----TCTGT----GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TCGGTGTATCTCGATATGCTG..........................................................................................................................................................2211.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCTGGGCTCTTATAG.................................................................................1911.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGACGCCAACGAGCTGGA..................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAACGAGCTGGAGGATGGGA..........................................2611.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGATGGGACGC---------CGAC..........................1911.0010010000
droYak3
GCCGGAGACCATGTATGGGTT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTA-AAGTCAAC-CAC--A-------------------TT------------------GA----ACAACAACCCATTT------GTCATGTCAC-TAAGGTGA-TGTAT-ATACCG--TTATCAACAAT-TTTTACTC-TCTC-----TCTGT--GTGTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------TA--ACC-------GA------------------ATCC-AAA-T----------------------------------------CCAAATCCGTGCCGTGCTTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCGACGA---------CGACGAGT----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCGAGCTGGAGGATGCGAC.........................................2411.00101000000000
.........................................................................................................................................................................................................................................................................................................................T----------------------------------------CCAAATCCGTGCCGTGCTTCCAT------CC.................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..........ATGTATGGGTT-GG-CCAAGAAGCTGGGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGATGCCAGCGAGCTGGAGGA...............................................2511.00101000000000
............................AGAAGCTGGGACCGCTGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
.......................................................................................................................................................................................................................................................GGGAAT--CTCG-CCCG------TA--ACC-------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..........ATGTATGGGTT-GG-CCAAGAAGCTGGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000000000
....................T-GG-CCAAGAAGCTGGGACCGCTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............ATGGGTT-GG-CCAAGAAGCTGGGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................GG-CCAAGAAGCTGGGACCGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCAGCGAGCTGGAGG................................................2311.00101000000000
........................................................................................................................................................................................................................G---------------AAAT--TTTGATCATGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
..................GTT-GG-CCAAGAAGCTGGGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
........................................................................................................................................................................................................................G---------------AAAT--TTTGATCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGATGCCAGCGAGCTGGAGGATGC............................................2911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---ATTGTGTGTC--------------------------------CG----TCGGTGT........................................................................................................................................................................2011.00100000010000
...........................................................................................................................................................................................TTTTACTC-TCTC-----TCTGT--GTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCAGCGAGCTGGAGGATGC............................................2411.00100000010000
..........ATGTATGGGTT-GG-CCAAGAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCAGCGAGCTGGAGGATGC............................................2711.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CCTCCTTCTGGGCTCTTATAG.................................................................................2311.00101000000000
......GACCATGTATGGGTT-GG-CCAAGAAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATGCTGTGTGCCTCT.................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCAGCGAGCTGGAGGATGCGA..........................................2911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC--------------------------------CG----TCGGTGTATCTCGAT................................................................................................................................................................2011.00101000000000
..................................................................................................................................................................................................C-TCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.........CATGTATGGGTT-GG-CCAAGAAGCTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAGCTGGAGGATGCGACGA---------C.............................2411.00100000010000
...........................AAGAAGCTGGGACCGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................AAGAAGCTGGGACCGCTGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................G--TTATCAACAAT-TTTTACTC-T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
................................................................................................................................................................................................CTC-TCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTGTC--------------------------------CG----TCGGTGTATCTC...................................................................................................................................................................2411.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGGATGCGACGA---------C.............................1811.00101000000000
.....AGACCATGTATGGGTT-GG-C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
............GTATGGGTT-GG-CCAAGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCAGCGAGCTGGAGGATGCGAC.........................................2711.00110000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGCTGGAGGATGCGACGA---------C.............................2311.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGACGA---------CGACGAGT----------------------1820.50101000000000
droEug1
CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCTTGGACAAACGTGAGTTG-AAGTCATCCC--ACA---------------------------------------CA----AAAACAACCTCTCA------GTCATGTTTC--AAGGTGA-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTA---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------CACTTCCAT------CCACTCCCA-----------------------------------------------------------------------------------------------------------------------------------ATCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-TCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGCGAGCTGGAGGATGCCACGG---------CATCCAGT----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGGAGACAATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AACTCATCCC--ACT---------------------------------------CAAAAAAAAGAAA-----CT------GTCATGTCGC-AAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTACTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TACTTCCGT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTT-TGGGCTCTTATAGTCAACCTCAAGTTCGACGCCAGTGAGCTGGAGGACGCCACGG---------CGGCGAGT----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCCTGGACAAACGTGAGTTG-AAGTCATCCC--ACA---------------------------------------CAAAAAATATC-----ACCT------GTCATGTTGCAAAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTACTC-TCTC-----TCTGT--GCGTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GC------------------ATCC-ATA-T----------------------------------------CCG-----------TACTTCCGTCCCATTCCGTGCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAGGATGCGACGG---------CGGCGAGT----------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AATTCAAC-CCCGC-------------------------------------------------------TACCT------ATCATGTCGCATAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT--GTGTG---------------AAAT--TTTGATC------------------G------AA--TCC-------GA------------------ATCC-CAA-T----------------------------------------CCG-----------TACTTCCAT------GCACTCGCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTTC----------------------CCT--------CT-TCTCCATCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGTGTGCTGGAGGATGCCACCG---------CGTCGAGT----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCCGTGGACAAACGTGAGTTG-AAGTCATCCC--ACA---------------------------------------CAAAAAAAAACAACCTACCT------GTCATGTCGC-AAAGGTGT-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCG------AA--TCC-------GA------------------ATCC-AAA-T----------------------------------------CCG-----------TACTGCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATCGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTTTCTCTGGGCTCTTATAGTCAACCTCAAGTTCGATGCCAGCGAGCTGGAAGATGCCACCG---------CGGCGAGT----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCCGGAGACGATGTACGGACT-GG-CCAAGAAGCTGGGACCGCTGGACAAACGTGAGTTG-AACTCATCCC--ACA------AACGA---AAAAA--------------------AA----AAAACATC----CT------GTCATGTTGC-AAAGGTGA-TGTGT-ATACCG--TTATCAACAAT-TTTTGCTC-TCTC-----TCTGT----GTG---------------AAAT--TTTGATCATGGGAAT--CTCG-CCCGCACTCGAA--TTC-------GA------------------ACCC-GAT-C----------------------------------------CCG-----------TGTCTCCAT------CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATTGTGCTTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTCGTCCTCAAGTTCGACCCCAGCGAGCTGGAGGATGCCACCG---------CGGCGAGT----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC-TTTC-----TCTGT----GTG---------------AATT--TTTGATCATGGAAAT--CTCGCCCCG------TA--TCT-------GA------------------ATCCGAAA-C----------------------------------------CTG-----------AATCTCCATT-----CCATTCCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTC---ATCGTGTGTC--------------------------------CG----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTT----------------------------------CT-CCTCCTTCTGGGCTCTTATAGTGCAACTCAAGTTCGACAGCAGCGACCTGGAGGATGCCACAG---------CCGCGAGT----------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCCGGAGACGATGTACGGATT-GG-CCAAGAAACTGGGTCCAATGGATAAACGTGAGTTTCAAGTCATACC--ATACC---ATACCATA-----------------AAGTCTAGAGA----AAAAGA--------------GTCATGT--C-AAAGGTGA-TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTGTGGTGTGTGT----GTG---------------AAAT--TTTGATCATGGAAAC--ATC------------------CATTATTGGAAA---------------------------------------CTCGATAACCTCTCAAAAAACCCATATCCA--------------TTCCA------------CCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTCATGATTGTGTGTC--------------------------------CT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTTTCT-------------------------------CTGCCTCGTTCTGGACTCTTGTAGTGACCCTGAAGTTCGATGCCTGCGACCTGGAGGATGCCACTG---------CGGCGAGT----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........GATGTACGGATT-GG-CCAAGAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCTGCGACCTGGAGGAT..............................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGATATGCTGTGTGCCTCTCTCC.............................................................................................................................................2711.001100000
...........................AAGAAACTGGGTCCAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.................................................................................................................................................................................ATCAACAAT-TTTTCCTCCTCTGTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................TTCCTCCTCTGTGGTGTGTGT----GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCTGCGACCTGGAGGATGC............................................2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCTGCGACCTGGAGGATGCCAC.........................................2611.001000001
droBip1
GCCGGAGACGATGTACGGACT-GG-CCAAGAAACTGGGTCCAGTGGATAAACGTGAGTTTCAAGTCAAACC--ATACC---GTACCATA------AA------------------GA----AAAAAAAGTCA---------GTCATGT--C-AAAGGTGA-TGTAAAATACCG--TTATCAACAAT-TTTTCCTCCTCTCTGGTTTGTGT----GTG---------------AAAT--TTTGATCATGGAAACATC-CG-CCCG------AACATCCGTTATTGGAAA---------------------------------------CTCGATAACCGCT------ATCCATATCCA--------------TTCCA------------CCCA-----------------------------------------------------------------------------------------------------------------------------------TTCTCATGATTGTGTGTC--------------------------------CT----TCGGTGTATCTCGATATGCTGTGTGCCTCTCTCCTTTCT-------------------------------CTGCCTCGTTCTGGACTCTTGTAGTGACCCTAAAGTTTGATGCCTGCGACCTGGAGGATGCCACTG---------CGGCGAGT----------------------SizeHit CountTotal NormTotal
No Reads
dp5
CGCGGCGCAGATGTACGGGAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCC---CAC--A-------------------GATCCCCCGTCCCGCCTCCA---TCCAAAACGTCCTACATTTTACTCAAATGTTGT-TGAGGTGATTGTAT-AGACCGTGTTATCAAATATATTTTGCTC-ATGC-----TC--------CA---------------AAAT--TTTGATCATGGGAAT--C-CG-CCTG------AG--ACC-------GC------------------CTCC-AGTCTCCCCACCTGCCCACCTGAC--------CACCTGCCCCCCTACC-----------TG---------------CCTCACT-----------------------------------------------------------------------------------------------------------------------------------CTCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCCTT----------------------------------TC-TCGCCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCTGCGGCCAGT---GCGGCGGCCAGTGCTGCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........GATGTACGGGAT-GG-CCAAGAAGCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030200001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGT---GCGGCGGCCAGTGCTG...2312.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAGCCGCTGCGGCCAGT---GCGGC..............2712.0020200000000
.............TACGGGAT-GG-CCAAGAAGCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................................................................................................................................................T-TGAGGTGATTGTAT-AGACCGTGTTATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTCAAGTTCGATGCCAC...........................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCACCGAATTGGAAGAAGC............................................2311.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGCCACCGAATTGGAAGA...............................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCTGCGGCCAGT---GCGGC..............2011.0010100000000
...................AT-GG-CCAAGAAGCTGGGACCCGTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCCGCTGCGGCCAGT---GCGGC..............2411.0010100000000
.......................G-CCAAGAAGCTGGGACCCGTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGGAAGAAGCAGC.........................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTGGTT-------------------------TG----TGTGTGT........................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCACCGAATTGGA..................................................1811.0010100000000
..................GAT-GG-CCAAGAAGCTGGGACCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGTTCGATGCCACCG.........................................................1911.0010100000000
............................AGAAGCTGGGACCCGTGAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATCTCGATATGCTCTGTGCCTCT.................................................................................................................................................2711.0010100000000
..................................................................................................................................................GTTGT-TGAGGTGATTGTAT-AGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCTGCGGCCAGT---GCGGC..............2111.0010100000000
......................GG-CCAAGAAGCTGGGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................AAGCTGGGACCCGTGAATAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGAAGCCCTCAAGTTCGATGCCACC..........................................................2811.0010100000000
..........................CAAGAAGCTGGGACCCGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................T--TTTGATCATGGGAAT--C-CG-CCTG------AG--A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTT-------------------------TG----TGTGTGTATC.....................................................................................................................................................................2011.0010000001000
...GGCGCAGATGTACGGGAT-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCAGT---GCGGCGGCCAGTGCT....2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------------------------------------------------------------------------------------------------------------------------CTCTC---ATTGTGTCTCTGT..................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCACCGAATTGGAAGAAGCA...........................................2511.0010100000000
...........................................................................................................................AACGTCCTACATTTTACTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................GTGATTGTAT-AGACCGTGTTATCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAAGCAGCCGCAGCCGCTGCGGCC.........................2811.0010001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAATTGGAAGAAGCAGCCGCAGCC..................................2711.0010100000000
.............TACGGGAT-GG-CCAAGAAGCTGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
..............ACGGGAT-GG-CCAAGAAGCTGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................TCAAATGTTGT-TGAGGTGATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCGATGCCACCGAATTGGAA.................................................2511.0010100000000
droPer2
CCCGGCGCAGATGTACGGAAT-GG-CCAAGAAGCTGGGACCCGTGAATAAACGTGAGTTT-CAGTCC---CAC--A-------------------GATCCCACTTCCCGTCTCCA---TCCGAAACGTCCTACATTTTACTCAAATGTTGT-TGAGGTGATTGTAT-AGACCGTGTTATCAAATATATTTTGCTC-ATGC-----TC--------CA---------------AAAT--TTTGATCATGGGAAT--C-CG-CCTG------AG--ACC-------GC------------------CTCC-AGTCTCCCCACCTGCCCACCTGAC--------CACCTGCCCCCCTACC-----------TG---------------CCTCACT-----------------------------------------------------------------------------------------------------------------------------------CTCTC---ATTGTGTCTCTGTGGTT-------------------------TG----TGTGTGTATCTCGATATGCTCTGTGCCTCTCTCCTT----------------------------------TC-TCGCCATCTCG-ATCTTATAGAAGCCCTCAAGTTCGATGCCACCGAATTGGAAGAAGCAGCCGCAGCCGCTGCGGCCAGT---GCGGCGGCCAGTGCTGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................T-CAGTCC---CAC--A-------------------GATCCCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGAATTGGAAGAAGC............................................1911.001010000
............GTACGGAAT-GG-CCAAGAAGCTGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...GGCGCAGATGTACGGAAT-GG-C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................................................................................................................................CCCCACCTGCCCACCTGAC--------CACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTGGTT-------------------------TG----TGTGTGT........................................................................................................................................................................1911.001000010
droWil2
ACCAGAGACCATGTACGGTTT-GG-CCAAGAAGCTGGGACCAATGGATAAACGTGAGTTA-CATTCGAC-CCCACT---------------------------------------CAAAAAAT--------ATATATCA--ATCAA--TAT-AAAGGTTA-TGTAT-ATACCG--GTATCAATA------TGATT----------TTTAT----GTGAACATTTCGGATCTAAAATTGTTTGATTATGGGAAT--C-------------------------------------------------------A-T----------------------------------------CCT-----------TACTTACTT------TCATTAT--------------------------------------------------------------------------------------------------------------------------------------TT-----TTTGTGTGT----GGTTTTTTCATGTTCACTCTATGTGTGTTGTCCAATCGGTGTATTTCGATATGCTCTGTGGCTTTCTTTTC--TCGTCTTTTCTTTTTCCCTTCTCTCTTCTCCTTTGTTTCGTTCTTA-TCCTTATAGTGCACATAAAATTTGATGCCAGCGAATTGGAAGATGCCACAT---------CTTTGGCCAGT-------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................TT-GG-CCAAGAAGCTGGGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAAGATGCCACAT---------CTT...........................2011.00100001
..................................TGGGACCAATGGATAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAATTGGAAGATGCC...........................................1911.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATTTGATGCCAGCGA........................................................2011.00100100
droVir3
TCCGGAAACGATGTATGGGCT-GG-CAAAGAAGCTGGGACCGTTGGATAAACGTGAGTTG-AACTCATACC--AAT---------------------------------------CT--------------------------AAGAT--T-AAAGGTGA-TGTAT-ATACCG--TTATCAATAAT-TTTGGCTC-TCTA-----TGTTGATGACAC---------------AAAT--TTTGATTATGGGAAT--CTCG-CCCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------TCGCATCGTCAATA-----------------------------------------CGCACAAAATATC------------AAACAATTCCATTTGCATGAACCCCATTTCATACCCACCCCGCCCCCTAAAAATTTCTCTG---ACTGTGGCTGAATG----------------------TGTG--TGTCAATCGGTGTATTTCGATATGCTCTGTGCCTCTCT--TT----------------------------------CT-CCTCATTTTCGGCTCTTATAGTGACGCTCAAGTTTGATCCTCGCGATCTGGAGGATGCTCCC----------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGATTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2619.009000000000000000000000000000000000000000000000000000000000900000
......................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGATTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003001000000000000000000000000000000000000000000000000000000200000
......................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003001000000000000100000000000000000000000000000000000000000000001
......................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TTTGATTATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.003002000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TGTCAATCGGTGTATTTCG..................................................................................................................................................................2112.002000000000000000000000000000000000000002000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAAATTTCTCTG---ACT............................................................................................................................................................................................................................1812.002110000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTCTCTG---ACTGTGGCT......................................................................................................................................................................................................................2012.002200000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TA-----TGTTGATGACAC---------------AAAT--TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
.................................CTGGGACCGTTGGATAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................G-CCCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------TCGCATCGT......................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.....AAACGATGTATGGGCT-GG-CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.................GGCT-GG-CAAAGAAGCTGGGACCGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCCTAAAAATTTCTCTG---ACT............................................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCATTTCATACCCACCCCGCC...................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................AAAGAAGCTGGGACCGTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGAATG----------------------TGTG--TGTCAATC.............................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.......ACGATGTATGGGCT-GG-CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................TATGGGAAT--CTCG-CCCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------T..............................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000100000000000000000000000
.........................CAAAGAAGCTGGGACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CT--------------------------AAGAT--T-AAAGGTGA-TGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................AGGTGA-TGTAT-ATACCG--TTATCAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAATATC------------AAACAATTCCATTTGCAT.............................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................G------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------TCGCATCGT......................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATC------------AAACAATTCCATTTGC...............................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................G-CCCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------TCGCATC........................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
.....AAACGATGTATGGGCT-GG-CAAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
....................T-GG-CAAAGAAGCTGGGACCGTTGGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
..................................TGGGACCGTTGGATAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
......AACGATGTATGGGCT-GG-CAAAGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..................GCT-GG-CAAAGAAGCTGGGACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000010000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................GACAC---------------AAAT--TTTGATTATGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACTGTGGCTGAATG----------------------TGTG--TGTC.................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAAATTTCTCTG---ACT............................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTG---ACTGTGGCTGAATG----------------------...........................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTCGCGATCTGGAGGATGC............................................2311.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GATGACAC---------------AAAT--TTTGATTATGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------------------------TCGCATCGTCAATA-----------------------------------------CGCACA..................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GAAT--CTCG-CCCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------T..............................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........ATGTATGGGCT-GG-CAAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------TCGCATC........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTTCGATATGCTCT.........................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCCCCTAAAAATTTCTCTG---ACT............................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTG---ACTGTGGCTGAATG----------------------TGT........................................................................................................................................................................................2411.001000000000000000000000000000000000000001000000000000000000000000
...........TGTATGGGCT-GG-CAAAGAAGCTGGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
............GTATGGGCT-GG-CAAAGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................TACC--AAT---------------------------------------CT--------------------------AAGAT--T-AAAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAGTTTGATCCTCGC..........................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.CCGGAAACGATGTATGGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.......................G-CAAAGAAGCTGGGACCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AT--CTCG-CCCG------TCCCTCGCTCC----------------------------------------------------------------------------------------------------------TCGC...........................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGATCTGGAGGATGC............................................1820.501000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGATCTGGAGGATGC............................................1920.501000000000000000000000000000001000000000000000000000000000000000
droMoj3
GCCGGAGACGATGTTCGGGCT-GG-CCAAGAAGCTGGGGCCGTTGGATAAACGTGAGTTA---------------------------------------------------------------------------------CTCAAAT--T-GAAGGTGA-TGTAT-ATACCG--TTATCAATAAT-TTTTGCTC-TCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAAT--CTCG-CCCG--------------------------------------------------------------------------------------------------------------CAT------CCACTCGCAACGTCATTTCATTTTCTTCAACCTAACGTATATCGCTGTACTAATCTATGCGC----CATGTCTAACTCTCCTGAAATCTATTCCGCTTGCAT---------CTCACA---------------AAACATCTCTCTC---ACTGTGGCTGTGTG----------------------TGTC--TGTTAATCGGTGTATTTCGATATGCTCTGTGCCTCTCTCCTC--T--------------------G----------CT-CCTCATTTTCGGCTCTTATAGTGACGCTCAAATTCGATCCCAGCGAGCTGGAGGAGACGCCCT---------CGTCGAGCGCC-------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC----CATGTCTAACTCTCCTGAA..............................................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGAGCTGGAGGAGAC............................................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTTCGATATGCTCTGT.......................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGTGTATTTCGATATGCTCTGT.......................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATCGGTGTATTTCGATA...............................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGATCCCAGCGAGCTGGAGGA...............................................2611.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATCCCAGCGAGCTGG...................................................1911.001100000
droGri2
GCCAGAGACGTTGTATGGTCT-GG-CTAAGAAACTGGGATCATTGGATAAACGTGAGTTA-AACCCTAACC--ACT---------------------------------------C------------------T------ATCAAATTGAAAAAGGTGA-TGTAT-ATACCG--TTATCAATAAT-TTTTGCTC-TCTT-----TGTCGACGACAC---------------AAAT--TTTGATTATGGGAAT--ATCG-CCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:33 AM