ID:

dsi_12505

 Coordinate:

2r:4676346-4676627 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -13.1 -13.0 -12.8

Flybase annnotation

CDS [2r_4674471_4676301_+]; three_prime_UTR [2r_4676302_4677707_+]; exon [2r_4674471_4677707_+]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##############################################################################################################################################################################################################################################################################################################################################################################################
GCCTAAGCTGGAGCGGCTGGCGACGGTGGGGATGGGAGGACAAACTGGAGGTAATAACTAGCCACAGTGCTAAAGGAAAATCTCCGCCACATCTAATTATAACATAGCAGCCGTAGTCGTATCTTAGCTCGTCCTCTCCCACGTGGAGGACAACCGGGGGCCACATACATGCAAGGGACGTGTATGGGGCTCCTCCAAGCACCGCATACACGCACACACACACACATATGATGCACACATACAGAGACAGAAGCAGAACCGAGGAGACTTCACCCACACCTCATGACCCAAAAACCCGTATTAATTAACCATTAATCAACCTTCTTTTGCAGACAGGATCTCTCTTTTGGTTTTAGTTCAAGTTCTCGATGTGTTAGTGACA
***************************************************************************************************************************************************************************************.((...((((((...(((...((((..................)))).)))..........................))))))....)).************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 O002
Head
 M024
male body		 O001
Testis
 SRR1275483
Male prepupae		 SRR1275485
Male prepupae
............................................................................................................................................................................AAGGGAAGGGTATTGGGCTC.............................................................................................................................................................................................. 20 3 9 34.44 310 265 0 0 37 0 0 0 0 1 0 0 0 6 1
............................................................................................................................................................................AAGGGAAGGGTATTGGGCT............................................................................................................................................................................................... 19 3 20 9.70 194 194 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TAGCTCGTTCTCTCCGA................................................................................................................................................................................................................................................. 17 2 6 3.50 21 0 21 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TATGATGCACACATACAGAGACAGGA.................................................................................................................................. 26 1 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................TAGTTCAAGTTCTCGATGTGTTAGTGAC. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................TGGGAGGACAAACTGGAGGTAATAACT................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CAGAAGCAGAACCGAGGAGACTTCAC............................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................GGGGATGGGAGGACAAACT................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................ACAGAAGCAGAACCGAGGAGACTTCACC............................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................CAGAGACAGAAGCAGAACC.......................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GAAGCAGAACCGAGGAGA................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AGAAGCAGAACCGAGGAGACTTCACC............................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................TTAGCTCGTTCTCTCCGA................................................................................................................................................................................................................................................. 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TTAGTTCAAGTTCTCGATGTGTTAGT.... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................AGGACAAATTGGAGGTAAAAA..................................................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................GGATGGGAGGACAAACTGGAGGTA......................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TTTGCAGACAGGATCTCTCTTTTGGTTT............................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TGCACACATACAGAGACAGAAGCAGAACCGA........................................................................................................................ 31 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................ATGGGGCTCCTCCAAGCA..................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................GGTTTTAGTTCAAGTTCTCGA............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TTAGTTCAAGTTCTCGATGTG......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TCTTTTGGTTTTAGTTCAAGTTCTCGA............. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................CAGAACCGAGGAGACTTCACCCACACC...................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................CAAGTTCTCGATGTGTTAGT.... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CACACACACATATGATGCACACATACAGA......................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................CAGACAGGATCTCTCTTT................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................TTTGCAGACAGGATCTCTCTTTTGGT............................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TTTTGCAGACAGGATCTCTCTTTTGG................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACACGCACACACACACACATAT......................................................................................................................................................... 22 0 6 0.67 4 0 0 0 0 0 0 0 0 0 4 0 0 0 0
............................................................................................................................................................................................................................................................GCAGAACCGAGGAGA................................................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TCTAATTAAAACATAGCA................................................................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....AGCTAGAGCTGCTGTCGACGGTG.................................................................................................................................................................................................................................................................................................................................................................. 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................CACAGTGCTAAAGGAAAT.............................................................................................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................TGGGGAACGGAGGACTAACT................................................................................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....AGCTCGTGAGGCTGGCGACGG.................................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......GCTCGTGAGGCTGGCGACGG.................................................................................................................................................................................................................................................................................................................................................................... 20 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCCTCTCCCAAGAGGAGG......................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................AGTGCCAAAGGAAAAGCTC.......................................................................................................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAGGGAAGTGTATTGGG................................................................................................................................................................................................. 17 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............GGCTGGCGGCGGTGGGGCT............................................................................................................................................................................................................................................................................................................................................................. 19 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CTCAGTGCTAAAGGA................................................................................................................................................................................................................................................................................................................. 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTAGCTCGTTCTCTCCGAA................................................................................................................................................................................................................................................ 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CTTGCAAGGGACGTCTATT.................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGGATTCGACCTCGCCGACCGCTGCCACCCCTACCCTCCTGTTTGACCTCCATTATTGATCGGTGTCACGATTTCCTTTTAGAGGCGGTGTAGATTAATATTGTATCGTCGGCATCAGCATAGAATCGAGCAGGAGAGGGTGCACCTCCTGTTGGCCCCCGGTGTATGTACGTTCCCTGCACATACCCCGAGGAGGTTCGTGGCGTATGTGCGTGTGTGTGTGTGTATACTACGTGTGTATGTCTCTGTCTTCGTCTTGGCTCCTCTGAAGTGGGTGTGGAGTACTGGGTTTTTGGGCATAATTAATTGGTAATTAGTTGGAAGAAAACGTCTGTCCTAGAGAGAAAACCAAAATCAAGTTCAAGAGCTACACAATCACTGT
*************************************************************************************************************.((...((((((...(((...((((..................)))).)))..........................))))))....)).*************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
...........................................................................................................................................................................................................................................................................................................................................................ACCAAAATCAAGTTCAAGAGC.............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................CGAGCAGGAGAGGGTTCTC............................................................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................CAAAATCAAGTTCAAGAGCTA............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TACTACGTGTGTATGTCTC........................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GGTGTGGAGTACTGGGTTTTG........................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GAAGAAAATGTCTGTCCTAAT......................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................GAGCTAGAGAATCACTGT 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
.............GCCGACTGCTGCCAGACCTA............................................................................................................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................GTTGGAAAAAAACGTCAGT............................................... 19 2 6 0.17 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................GGGTAATTAGTTGGAAGATG....................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................GGTTTGGCTCCTGTGAAGT.............................................................................................................. 19 3 20 0.10 2 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................GTCCAGGCTCCTCTGAA................................................................................................................ 17 2 12 0.08 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................CCAGTTCAAGAGCTGCA.......... 17 2 16 0.06 1 0 0 0 1 0 0 0 0 0
...........................................................................CTTTTAGAGGCGGGGCA.................................................................................................................................................................................................................................................................................................. 17 2 19 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TGGAGAACTGGACTTTTGG...................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
...........................................................................................AAAGTAATATTGCATCGTC................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................GCGATGGGTGTGGAGTAC................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
................................................................................................................TATCGGCTTAGAATCGAG............................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TAATTGGCAATTAGT................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................GGAGATTCGTGGCGAATC............................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4676296-4676677 + dsi_12505 GCCTAAGCTGG-------------AGCGGCT-------GGCGACGGTGGG---GAT--GGG-----------AGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTAAAGGAA-----AATCT--C-CGCCA--CA-TCTAATTAT-A--AC-ATAGCAGCCGTAGTCGTATCTTAGCTCGT----CCTC---TCCCACGT-----------------------------------------G---GAGGACAACC-GG-GGGCCACATACATGCAAGGGACGTGTATGG---GG---------CTC--------------CTC-CAA-GCACCGCAT----------ACAC--GCAC-----ACACAC------A--------------------------CACATATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCAAA----------------------------AA--------------CCCGTATTAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droSec2 scaffold_1:1490100-1490481 + GCCTAAGCTGG-------------AGCGGCT-------GGCGACGGTGGG---GAT--GGG-----------AGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTAAAGGAA-----AATCT--C-CGCCA--CA-TCTAATTAT-A--AC-ATAGCAGCCGTAGTCGTATCTTAGCTCGT----CCTC---TCCCAAGA-----------------------------------------G---GAGGACAACC-AG-GGGCCACATACATGCAAGGGACGTGTATGG---GG---------CTC--------------CTC-CAA-GCACCGCAT----------ACAC--GCAC-----ACACAC------A--------------------------CACATATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCAAA-----------------------------AG-------------CCCGTATTAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGTGACA
dm3 chr2R:3852782-3853162 + GCCTGAGCTGG-------------AGCGGCT-------GGCGACGGTGGG---GAT--GGG-----------AGGACAAACTG-TAGGTAAT-AACTAGCCACAGTGCTCAAGGAA-----AATCT--C-CGCCA--CA-TCTAATTAT-A--GC-ATAGCAGCCGTAGTCGTATCTTAGCTCGT----CCTC---TCCCAAGT-----------------------------------------G---GAGGACACCC-GG-GGGCCACATACATGCAAGGGACGTGTATGC---GG---------CTC--------------CTC-CAA-GCACCGCAC----------ACAC--GCAC-----ATACAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCAAA-----------------------------AAC------------CCCGCATTAATTAACCATTAATTAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droEre2 scaffold_4929:18775076-18775461 - GCCTAAGCTGG-------------AGTGGCA-------AGCGACGATG-A---GAT--GAGAGG-AAAGTGCTGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTCAAGGAA-----AAACT--C-CGCCA--CA-TCTAATTAT-A--AC-ATAGCAGCCGTAGTCGTATCTTAGTTCGT----CCTC---TCCCAAGA-----------------------------------------G---GAGGACAAAT--G-GGGCCACATACATGCAAGGGACGTGTATGT---GG---------CTC--------------CTC-CTA-GCACCGCAC----------ACAC--ACAC-----ACACAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCA-A-----------------------------A--------------CCCGTATTAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TATTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droYak3 2L:16509138-16509517 + GCATAAGCTGG-------------AAAGGCT-------GGCGATGGTGGG---GTT--GGGAAG-CAAGTGCTGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTCAAGAAA-----AAACT--C-CGCCA--CA-TATAATTAT-A--AC-ATAGCAGCCGTAGTCATATCTTTGCTCGC----CCTC---TTTCAAGA-----------------------------------------G---GAGGACAAAC-GG-GGGCCACATACATGCAAGGGACGTGTATGT---GG---------CTC--------------CTC-CTA-GCACCGCAC----------ACAC--AC-------------------A--------------------------C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCAA-A-----------------------------A--------------CCCGAATTAACCAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TATTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droEug1 scf7180000409474:2689748-2690132 + GCCTAAGATGA-------------AATGG-----------CGTTGA-AG---------GAGAGG---------AGACAAACTG-GAGGTAAT-GACTAGCCGCAGTGCTCAATGGA-----TGACT--C-CGCCA--CA-CCTAACTAT-A--AC-CTAGCAGCCGTAGTAGTATCTTAGATGCC----CC-C---ACAAAAAAT------------------------------GA------GAA---GAGGACAAAT-GGGGGCCCACATACATGCACGGGTCGTGTATGT---GC---------ATC--------------CTC-ACA-GCACCGCAC----------ACAC--GCAC-----ACACATGAACTCA--------------------------A--GCATGA-----------TGC----------------ACATACATTTAGAGAC-AT-GAGCAGAAA-----C--GAGGAGACATCACCCAC----ACT-TCATGACCCA-A-----------------------------A--------------TCCGTCTAAATTAACCATTAATTAACATTCTT-TTGCAGACA-------------------------------------------GGATAT-CT-CT--TTATGGTTT-------------CCTTTCAAGTTCTG--AA--TG--TGTTAGTGACA
droBia1 scf7180000302291:1694616-1695010 + GCCTAAGGTGG-------------AGCAG-----------AAGCGGTGGG---GAG--GAGAGG-CGGGTGCTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTCAAGAAG-----AGGGT--C-CACCC--CA-CATAACTAT-A--AC-ATAGCAGTCGTAGTCGTATCTTAGATGGCCTGGCCCC---TC--GAAAG--------------------------------------GAG---GAGGACAAA--GA-GGGTCACATACACGCATGGGTCGTGTATGC---TC---------ATC--------------CTC-CAA-GCACCGCAC----------ACAC--ACAC-----ATAGAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATCCAGAGAC-AT-GAGCAGAAC-----C--GAGGAGATATCACCCAC----ACC-TCATGACCCCTA-----------------------------ACCCCTA---------GCGTATTGATTAACCATTAATTAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGCCA
droTak1 scf7180000415088:281472-281840 - GCCTAAGATGG-------------AGTAG-----------A--------------------------ATCGGTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTCAACGAAAAAAAAGACT--C-CGGCACACCAATTAACTAT-A--ACTATAGCAGCCGTAGTCGTATCTTAGATGCC----CCTC---CCCAAAAAG--------------------------------------GAG---GCGGACAAAT-GG-GGGTCACATACATGCAAGGGTCGTGTATGT---GC---------ATC--------------CTCCCAA-GCACCGCAC----------ACAC--GCAC-----A--------------------------------------C--ACATGA-----------TGC----------------ACACACATACAGAGAC-AT-GAGCAGAAC-----C--GAGGAGACATCACCCAC----ATC-CCAACAC-------------------------------------------------CCCCTATTAATTAACCATTAATTAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droEle1 scf7180000491258:185950-186367 - GCCTAAGGTGG-------------ATTGA-AATCGGATGCCGG----GGG---GGCGGGAGAGG-CAAGTGCTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTCAAGGGAAGGGAAGACT--C-CGCCA--CA-CCTAACTAT-A--AT-GTAGCAGCCGTAGTCGTATCTTAGATGCC----CCTC---TCTTAAACG--------------------------------------GAG---GAGGACGAACTGG-GGGTCACATACATGCAAGGGTCGTGTATGT---GC---------ACC--------------CTC-CAA-GCACCGCAC----------GCAC--ACAC-----ACACAC------A--------------------------C--ACAC-A-----------CAC----------------ACA--CACGCAGAGAC-AC-GAGCAGAAC-----C--GAGGAGACATCATCCAC----ACC-TCATGACCCCTG-----------------------------ACCCCTGATCCCTGACCCGTATTAATTACCCATTAATTAACGTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CTGTTTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droRho1 scf7180000774573:99222-99602 + GCCTAAGGGGG-------------AGTGG-----------TGTTGG-AGGG-GG--AGGAGAAG-CAAGTGCTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTGAAAGGA-----AGACT--C-CGCCG--CA-CCTAACTAG-A--AA-GTAGCAGCCGTAGACGTATATTAGATGCC----CCTC---TC--GAAAG--------------------------------------GAGGAGGAGTACGAAC-TG-GGGTCACATACATGCAAGGGACGTGTATGT---GC---------ATC--------------CTT-CAA-GCACCGCAC----------ACAC-----------------------A--------------------------C--ACATGA-----------TGC----------------ACA--AACACAGAGAC-AT-GAGCAGAAC-----C--CAGGAGACATCATCCAC----ACC-TCATGACCCCTG-----------------------------A--------------CCCGTATTAATTAACCATTAATTAACTTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droFic1 scf7180000453215:357737-358129 - GCCTAAGGCCG-------------TTTGG-----------CGTTTT-AGG---TAT-GGAGATC-CAAGAGCTGAACAAACTG-GAGGTAAT-AACTAGCCGCAGTGCTCAAGGGA-----AGACT--C-CGCCA--CA-CATAACTTT-A--AT-CTAGCAACCGTAGTCGTATCTTAGATGCC----TCTC---TC--AAAAG--------------------------------------GAG---GAGGACGAACTGA-GGGTCACATACATGCGAGGGTCGTGTATGT---GC---------GCC--------------CT--TAA-GCACCGCAC----------ACAC--ACAC-----ACACACACAGACA--------------------------C--ACTTGA-----------TGC----------------ACA--CATTCAGAGAC-AT-GAGCAGAAC-----C--GAGGAGACATCACCCAC----ACC-TCATGACCCCAG-----------------------------A--------------CCCATATCAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATTT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACA
droKik1 scf7180000302471:474912-475318 + GCCTAAAATGG--------------TC-GAT-------GGCG-----------------AAAGG-CAAGTGCTGGACAAACTG-GAGGTAAC-GACTAGCCACAGTGCTCATGGGA-----AGCCT--CTTGTCA--CA-CCTAACTAT-ATATC-CTAGAAAACTTAGTCGTATCTTAGATGCT----CCTC---TC--AAGGC--------------------------------------GAG---GCGGATGCAGTTG-GGGACGCGTACACGCCAGGGCCGTGTATGTG-TGC---------GTC--------------CTC-CGC-ACACC-------CGCTTGCACAC--GCAC-----ACAC------------ACCACACACTCACCACATACA--C--ATATGA-----------TGC----------------ACA------AAGAGAA-AC-GAGCAGAAC-----C--GAGGAGACATCATCCACA--CACC-TCATGATCCCTG-----------------------------ACCC-----------CCTCTATTAATTAATCATTAATTTCCGTTCTTTTTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTTT------------TATAGCAAGTTCTC--GA--TG--TGTTAGTGACA
droAna3 scaffold_13266:16176604-16177016 + GCCTAAGA-GA-------------AGCGAAT-------GAAGATGT-------------AGAGG-CG-TTGCTGGACAAACTG-GAGGTAAT-GATTGGCCACAGTGCTCACGGAA-----AGAAT--C-CGCCA--CA-ACTAACTAATA--AC-A----------AGTAGTATCT-AGATGAG----CCTCCCAAC-TAAAGAGAG---------TTGGAGATGGAGGTGTGATGGGGTTTGAG---GAG-A----------CG-CATGTACATGCAAGGGTCGTGTACATGATGG---------ATC--------------CCCCCAA-ACAGCAGAC----------ACACTCGCAC-----ATAAAC------G--------------------------C--A----ATACCA------TTC----------------ACG--CACACAGAGTC-ACAGATAAGAAC-----C--GAGGAGACATCACCCATGACCATG-CCATCACCACTGA-----------------------CCAAAA--------------TCCGTATT----AACCTTTAACTATTGTTCTT-TTACAGACA-------------------------------------------GGATCT-CTTCTGTATATGGTTT-------------CATTTAAAGTTCTT--GA--TGTGTGTTAGTGACA
droBip1 scf7180000396567:657099-657532 + GCCTAAGAAGT--------------TCGAAT-------GAAATTGGT-------------GAGG-CG-TTGCTGGACAAACTG-GAGGTAAC-GATTGGCCACAGTGCTCACGGAA-----AGAAT--C-CGCCA--CA-ACTAACTATTA--AC-G----------AGTAGTATCT-AGATGAG----CCTC---CT--GAAGGGCGGGGGGGCTTTTGGAGG-AGAGGTGT--T-GGGTTTGAG---GAG-A----------CG-TATGTACATGCAAGGGTCGTGTACAT---GG---------ATC--------------CCT-TGA-ACAG-GCAC----------TC----GCACATTACACGC------------A--ATA-----------------C--GCA--ATACCA------TTC----------------ACG--CACACAGAGTC-AC-GATAAGAACATCACCGAGAGGAGACATCACCCATGACCATGCCCATGCCCACTGACCAATA-CCGAACGATTCCT-------GA--------------CCCGTATTAA----CCA-TAACCATTGTTCTT-TTACAGACA-------------------------------------------GGATCT-CTTCT--GTATGGTTTGC-----------TTTCTCGAGTTCTC--GA--TGTGTGTTAGTGACA
dp5 3:5482400-5482884 + GCCTAACTTGGGCCGGGGAAGGGGAGTGG-----------CAGTGT-AGGGAGG--AGGAGAGCTAAAGTGCTGGACAAACTGCGAGGTAAAAAGCTATCCACAGGGCTCGTTGGAAAGC-ACACTCCC-CTCCA--CAACGTAACTAT-T--AA-GTAGAAAACCTAAT-GTATCTAAGAGTCC----CCTA---TC--CAGA-----------------------------------------G---GAG-A----------CGTGACATACACGCAAGGGTCGTGTATATGGTGGACACCAGACATCCAGACATAATTGACATC-CTAGACATCACACATCCCCATAC--------AC-----AAAAAC------ACATTCGATTCACTTAG--------CC-------------ATAGAAAT--ATCTACACACCCATGCACTC--CCTTAGAGAAGAC-CCGGAGAAT-----C--GAGCAGACATC--CCAT------------AACCAG-------CAACAGAACCAGTACTCCCCCATAA--------------TCCATTGTAATTAATCA---ATTATTGTTCTTTTTACAGTT--------------------------------CTTTGAGAGGCAG--TCTGAT-CC--TTAAGGTTT-------------C-TTGAAAGATCTCCCGT--TG--TGTTAGTGACA
droPer2 scaffold_2:5681928-5682404 + GCCTAACTTGGGCCTGGGAAGGGGAGTGG-----------CAGTGT-AGGGAGG--AGGAGAGCTAAAGTGCTGGACAAACTGCGAGGTAAAAAGCTATCCACAGGGCTCGTTGGAAAGC-ACACTCCC-CTCCA--CAACGTAACTAT-T--AA-GTAGAAAACCTAAT-GTATCTAAGAGTCC----CCTA---TC--CAGA-----------------------------------------G---GAG-A----------CGTGACATACACGCAAGGGTCGTGTATATGGTGGACACCAGACATCC--------TTGACATC-CTAGACATCACACATCCCCATAC--------AC-----AAAAAC------ACATTCGATTCACTTAG--------CC-------------ATAGAAAT--ATCTACACACCCATGCACTC--CCTTAGAGAAGAC-CCGGAGAAT-----T--GAGCAGACATC--CCAT------------AACCAG-------TAACAGAACCAGTAATCCCCCATAA--------------TCCATTGTAATTAATCA---ATTATTGTTCTTTTTGCAGTT--------------------------------CTTTGAGAGGCAG--TCTGAT-CC--TTATGGTTT-------------C-TTGAAAGTTCTCCCGT--TG--TGTTAGTGACA
droWil2 scf2_1100000004382:1019640-1019853 + GCTTGAAGGGA--------------TC-------------------------------------------ACAAACCCAAGAG-GAGGTAAATGACTAACCACAGAGCTAAGACGA-----TAAAA--A-AG-TG--GA-GCTACCTGG-A--GA-ATAGCAGCAATTGAAATCCTTAAGAAAT-------------C--AAAAAAAA---------A-----------------CA------GAA---ATCGACAAGT----------------------------------------------------------------------TCCATCCTAGACAGGCACATAC--------AC-----CCAACC------ACATGGCACACACTCAA--------CC-------------ACTCACAC--ACACACACACA--CGCACACACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:16887876-16888077 - ACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--GCAC-----ACACAC------A--------------------------C--ATATGATAC--TCTATATAT----------------ATA--CATATATATAT-AT-ATGCTGAGT-----T--TTGCAG-----------------------------------------------------------AA--------------TCTGTATTAATC---CAATTATTATTGTTCTTTTTGCAGACAACTCAATCAATCTGTTAATCAATCAATCAAT------------CGACC--TT-AT--TTATGGTTTATTTTTTTTTTTTC-ATACACATTCTGTTTTCCTG--TG-TAGTGAGA
droMoj3 scaffold_6496:11114781-11114788 + GCCTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:5682526-5682532 - GCCTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCCTAAGCTGG-------------AGCGGCT-------GGCGACGGTGGG---GAT--GGG-----------AGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTAAAGGAA-----AATCT--C-CGCCA--CA-TCTAATTAT-A--AC-ATAGCAGCCGTAGTCGTATCTTAGCTCGT----CCTC---TCCCACGT-----------------------------------------G---GAGGACAACC-GG-GGGCCACATACATGCAAGGGACGTGTATGG---GG---------CTC--------------CTC-CAA-GCACCGCAT----------ACAC--GCAC-----ACACAC------A--------------------------CACATATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCAAA----------------------------AA--------------CCCGTATTAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCAAGTTCTC--GA--TG--TGTTAGTGAC.2811.00100000000100000000
.......................................................T--GGG-----------AGGACAAACTG-GAGGTAAT-AACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AG-AAGCAGAAC-----C--GAGGAGACTTCAC................................................................................................................................................................................................................................2611.00100000000000010000
...............................................GGG---GAT--GGG-----------AGGACAAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-AG-AAGCAGAAC-----C--GAGGAGACTTCACC...............................................................................................................................................................................................................................2811.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGAC-AG-AAGCAGAAC-----C--.............................................................................................................................................................................................................................................1911.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AAGCAGAAC-----C--GAGGAGA......................................................................................................................................................................................................................................1811.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AAGCAGAAC-----C--GAGGAGACTTCACC...............................................................................................................................................................................................................................2611.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGT....2611.00100000000010000000
.................................................G---GAT--GGG-----------AGGACAAACTG-GAGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------...................................2811.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GA...........................................................................................................................................................................................................................................3111.00100000001000000000
.................................................................................................................................................................................................................................................................................................ATGG---GG---------CTC--------------CTC-CAA-GCA...............................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTT-------------TAGTTCAAGTTCTC--GA--...............2111.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TAGTTCAAGTTCTC--GA--TG--TG.........2111.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CT--TT-TGGTTT-------------TAGTTCAAGTTCTC--GA--...............2711.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAC-----C--GAGGAGACTTCACCCAC----ACC-....................................................................................................................................................................................................................2711.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCTC--GA--TG--TGTTAGT....2011.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CACAC------A--------------------------CACATATGA-----------TGC----------------ACA--CATACAGA.....................................................................................................................................................................................................................................................................2911.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACA-------------------------------------------GGATCT-CT-CT--TT-......................................................1811.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGT..................................................2611.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGG...................................................2611.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................ACAC--GCAC-----ACACAC------A--------------------------CACATAT..................................................................................................................................................................................................................................................................................................................2260.67400000400000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAC-----C--GAGGAGA......................................................................................................................................................................................................................................1520.50100000000010000000
....................................................................................................CACAGTGCTAAAGGAA-----AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100001000000000000
droSec2
GCCTAAGCTGG-------------AGCGGCT-------GGCGACGGTGGG---GAT--GGG-----------AGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTAAAGGAA-----AATCT--C-CGCCA--CA-TCTAATTAT-A--AC-ATAGCAGCCGTAGTCGTATCTTAGCTCGT----CCTC---TCCCAAGA-----------------------------------------G---GAGGACAACC-AG-GGGCCACATACATGCAAGGGACGTGTATGG---GG---------CTC--------------CTC-CAA-GCACCGCAT----------ACAC--GCAC-----ACACAC------A--------------------------CACATATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCAAA-----------------------------AG-------------CCCGTATTAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..CTAAGCTGG-------------AGCGGCT-------GGCGACGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-AG-AAGCAGAAC-----C--GAGGAGACTT...................................................................................................................................................................................................................................2511.0010010
..................................................................................................................................................................................................................................................................................ATGCAAGGGACGTGTATGG---GG---------...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCTC--GA--TG--TGTTAGT....2011.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--T........................................................2211.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-AG-AAGCAGAAC-----C--GAGGAGAC.....................................................................................................................................................................................................................................2311.0010100
...................................................................................................................................................AT-A--AC-ATAGCAGCCGTAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------TAGTTCAAGTTCTC--GA--TG--TG.........2211.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACCTTCTT-TTGCAGACA-------------------------------------------.......................................................................2211.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCTC--GA--TG--TGTTAGT....1911.0010010
dm3
GCCTGAGCTGG-------------AGCGGCT-------GGCGACGGTGGG---GAT--GGG-----------AGGACAAACTG-TAGGTAAT-AACTAGCCACAGTGCTCAAGGAA-----AATCT--C-CGCCA--CA-TCTAATTAT-A--GC-ATAGCAGCCGTAGTCGTATCTTAGCTCGT----CCTC---TCCCAAGT-----------------------------------------G---GAGGACACCC-GG-GGGCCACATACATGCAAGGGACGTGTATGC---GG---------CTC--------------CTC-CAA-GCACCGCAC----------ACAC--GCAC-----ATACAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCAAA-----------------------------AAC------------CCCGCATTAATTAACCATTAATTAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................TACATGCAAGGGACGTGTATGC---GG---------C..........................................................................................................................................................................................................................................................................................................................................................................................................................25133.00330000000000000000000000000000000000000011100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000100000020000000000000100000000000000000000000000000000000000000000000000000000000002000000113020000303101000000000000301200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TAGTTCAAGTTCTC--GA--TG--TGTTAGT....26110.00100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010102200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.........................................................................................................................................................................................................AGT-----------------------------------------G---GAGGACACCC-GG-GGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GAT--GGG-----------AGGACAAACTG-TAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGA-----------TGC----------------ACA--CATACAGAGAC-A................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CGGCT-------GGCGACGGTGGG---GAT--GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAC-----C--GAGGAGACTTCAC................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAGAC-AG-AAGCAGAAC-----C--GAGGA........................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................................ATAGCAGCCGTAGTCGTATCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GACGGTGGG---GAT--GGG-----------AGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GACAAACTG-TAGGTAAT-AACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GTCGTATCTTAGCTCGT----CCTC---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CT-CT--TT-TGGTTT-------------TAGTTCAAGT.........................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TAGTTCAAGTTCTC--GA--TG--TG.........2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-A................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGT..................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CT-------GGCGACGGTGGG---GAT--GGG-----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000
...........................................................................................................................................................................................................................................................................................ACGTGTATGC---GG---------CTC--------------CTC-C.....................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000
..........................................................GGG-----------AGGACAAACTG-TAGGTAAT-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCAAGTTCTC--GA--TG--TGTTAGT....2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-AG-AAGCAGAAC-----C--GAGGAGA......................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CAC----------ACAC--GCAC-----ATACAC------A--------------------------C--ACATGA-----------T....................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------TGC----------------ACA--CATACAGAGAC-AG-..............................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGAAC-----C--GAGGAGACTTC..................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ACATGCAAGGGACGTGTATGC---GG---------C..........................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAC----ACC-TCATGACCCAAA-----------------------------AAC------------............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................C-ATAGCAGCCGTAGTCGTATCTTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................................................................TTAGCTCGT----CCTC---TCCCAAGT-----------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TC-CAA-GCACCGCAC----------ACAC--GCA......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCTC--GA--TG--TGTTAGTGACA2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CAC-----ATACAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATAC........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGG-------------AGCGGCT-------GGCGACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AAGCAGAAC-----C--GAGGAGACTTCACC...............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-------------TAGTTCAAGTTCTC--GA--TG--...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAC-----C--GAGGAGACT....................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGA-----------TGC----------------ACA--CATACAGAGAC-AG-..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCTC--GA--TG--TGTTAGT....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------TAGTTCAAGTTCTC--GA--TG--TGTT.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCAAGTTCTC--GA--TG--TGTTAGTGA..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AG-AAGCAGAAC-----C--GAGGAGACT....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCCTAAGCTGG-------------AGTGGCA-------AGCGACGATG-A---GAT--GAGAGG-AAAGTGCTGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTCAAGGAA-----AAACT--C-CGCCA--CA-TCTAATTAT-A--AC-ATAGCAGCCGTAGTCGTATCTTAGTTCGT----CCTC---TCCCAAGA-----------------------------------------G---GAGGACAAAT--G-GGGCCACATACATGCAAGGGACGTGTATGT---GG---------CTC--------------CTC-CTA-GCACCGCAC----------ACAC--ACAC-----ACACAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCCA-A-----------------------------A--------------CCCGTATTAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TATTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................AAAT--G-GGGCCACATACATGCAAGGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...........................................................................................................................................................................................................................................................................................ACGTGTATGT---GG---------CTC--------------CTC-C.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.............................CA-------AGCGACGATG-A---GAT--GAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-AG-AAGCAGAAC-----C--GAGGA........................................................................................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------A--------------CCCGTATTAATTAACCATT.........................................................................................................................................2111.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAC-AG-AAGCAGAAC-----C--GAGGA........................................................................................................................................................................................................................................2211.0010000100
..................................................................................................................................................................................................................................................................................ATGCAAGGGACGTGTATGT---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................CAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-A................................................................................................................................................................................................................................................................2911.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------TATTTCAAGTTCTC--GA--TG--TGTTAGT....2711.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCTC--GA--TG--TGTTAGTGAC.2311.0010000100
droYak3
GCATAAGCTGG-------------AAAGGCT-------GGCGATGGTGGG---GTT--GGGAAG-CAAGTGCTGGACAAACTG-GAGGTAAT-AACTAGCCACAGTGCTCAAGAAA-----AAACT--C-CGCCA--CA-TATAATTAT-A--AC-ATAGCAGCCGTAGTCATATCTTTGCTCGC----CCTC---TTTCAAGA-----------------------------------------G---GAGGACAAAC-GG-GGGCCACATACATGCAAGGGACGTGTATGT---GG---------CTC--------------CTC-CTA-GCACCGCAC----------ACAC--AC-------------------A--------------------------C--ACATGA-----------TGC----------------ACA--CATACAGAGAC-AG-AAGCAGAAC-----C--GAGGAGACTTCACCCAC----ACC-TCATGACCAA-A-----------------------------A--------------CCCGAATTAACCAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TT-TGGTTT-------------TATTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................AGTCATATCTTTGCTCGC----CCTC---TTTCAAGA-----------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3012.00200000000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-AG-AAGCAGAAC-----C--GAGGA........................................................................................................................................................................................................................................2012.00200000020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCTC--GA--TG--TGTTAGTGA..2211.00101000000000
.................................................................................................................................................TTAT-A--AC-ATAGCAGCCGTAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCTC--GA--TG--TGTTAGT....2111.00101000000000
..................................................................................................................................................................................................................................................................................ATGCAAGGGACGTGTATGT---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................CATGCAAGGGACGTGTATGT---GG---------CTC--------------..........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TATTTCAAGTTCTC--GA--TG--T..........2011.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................A--------------------------C--ACATGA-----------TGC----------------ACA--CATACA.......................................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGTTCTC--GA--TG--TGTTAGTGACA2811.00110000000000
...........................................................................................................................................................................ATATCTTTGCTCGC----CCTC---TTTCAAGA-----------------------------------------G---GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-AG-AAGCAGAAC-----C--GAGG.........................................................................................................................................................................................................................................1911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTC--GA--TG--TGTTAGT....1811.00101000000000
droEug1
GCCTAAGATGA-------------AATGG-----------CGTTGA-AG---------GAGAGG---------AGACAAACTG-GAGGTAAT-GACTAGCCGCAGTGCTCAATGGA-----TGACT--C-CGCCA--CA-CCTAACTAT-A--AC-CTAGCAGCCGTAGTAGTATCTTAGATGCC----CC-C---ACAAAAAAT------------------------------GA------GAA---GAGGACAAAT-GGGGGCCCACATACATGCACGGGTCGTGTATGT---GC---------ATC--------------CTC-ACA-GCACCGCAC----------ACAC--GCAC-----ACACATGAACTCA--------------------------A--GCATGA-----------TGC----------------ACATACATTTAGAGAC-AT-GAGCAGAAA-----C--GAGGAGACATCACCCAC----ACT-TCATGACCCA-A-----------------------------A--------------TCCGTCTAAATTAACCATTAATTAACATTCTT-TTGCAGACA-------------------------------------------GGATAT-CT-CT--TTATGGTTT-------------CCTTTCAAGTTCTG--AA--TG--TGTTAGTGACASizeHit CountTotal NormTotal
No Reads
droBia1
GCCTAAGGTGG-------------AGCAG-----------AAGCGGTGGG---GAG--GAGAGG-CGGGTGCTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTCAAGAAG-----AGGGT--C-CACCC--CA-CATAACTAT-A--AC-ATAGCAGTCGTAGTCGTATCTTAGATGGCCTGGCCCC---TC--GAAAG--------------------------------------GAG---GAGGACAAA--GA-GGGTCACATACACGCATGGGTCGTGTATGC---TC---------ATC--------------CTC-CAA-GCACCGCAC----------ACAC--ACAC-----ATAGAC------A--------------------------C--ACATGA-----------TGC----------------ACA--CATCCAGAGAC-AT-GAGCAGAAC-----C--GAGGAGATATCACCCAC----ACC-TCATGACCCCTA-----------------------------ACCCCTA---------GCGTATTGATTAACCATTAATTAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGCCASizeHit CountTotal NormTotal
No Reads
droTak1
GCCTAAGATGG-------------AGTAG-----------A--------------------------ATCGGTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTCAACGAAAAAAAAGACT--C-CGGCACACCAATTAACTAT-A--ACTATAGCAGCCGTAGTCGTATCTTAGATGCC----CCTC---CCCAAAAAG--------------------------------------GAG---GCGGACAAAT-GG-GGGTCACATACATGCAAGGGTCGTGTATGT---GC---------ATC--------------CTCCCAA-GCACCGCAC----------ACAC--GCAC-----A--------------------------------------C--ACATGA-----------TGC----------------ACACACATACAGAGAC-AT-GAGCAGAAC-----C--GAGGAGACATCACCCAC----ATC-CCAACAC-------------------------------------------------CCCCTATTAATTAACCATTAATTAACCTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotal
No Reads
droEle1
GCCTAAGGTGG-------------ATTGA-AATCGGATGCCGG----GGG---GGCGGGAGAGG-CAAGTGCTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTCAAGGGAAGGGAAGACT--C-CGCCA--CA-CCTAACTAT-A--AT-GTAGCAGCCGTAGTCGTATCTTAGATGCC----CCTC---TCTTAAACG--------------------------------------GAG---GAGGACGAACTGG-GGGTCACATACATGCAAGGGTCGTGTATGT---GC---------ACC--------------CTC-CAA-GCACCGCAC----------GCAC--ACAC-----ACACAC------A--------------------------C--ACAC-A-----------CAC----------------ACA--CACGCAGAGAC-AC-GAGCAGAAC-----C--GAGGAGACATCATCCAC----ACC-TCATGACCCCTG-----------------------------ACCCCTGATCCCTGACCCGTATTAATTACCCATTAATTAACGTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CTGTTTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotal
No Reads
droRho1
GCCTAAGGGGG-------------AGTGG-----------TGTTGG-AGGG-GG--AGGAGAAG-CAAGTGCTGGACAAACTG-GAGGTAAT-GACTAGCCACAGTGCTGAAAGGA-----AGACT--C-CGCCG--CA-CCTAACTAG-A--AA-GTAGCAGCCGTAGACGTATATTAGATGCC----CCTC---TC--GAAAG--------------------------------------GAGGAGGAGTACGAAC-TG-GGGTCACATACATGCAAGGGACGTGTATGT---GC---------ATC--------------CTT-CAA-GCACCGCAC----------ACAC-----------------------A--------------------------C--ACATGA-----------TGC----------------ACA--AACACAGAGAC-AT-GAGCAGAAC-----C--CAGGAGACATCATCCAC----ACC-TCATGACCCCTG-----------------------------A--------------CCCGTATTAATTAACCATTAATTAACTTTCTT-TTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotal
No Reads
droFic1
GCCTAAGGCCG-------------TTTGG-----------CGTTTT-AGG---TAT-GGAGATC-CAAGAGCTGAACAAACTG-GAGGTAAT-AACTAGCCGCAGTGCTCAAGGGA-----AGACT--C-CGCCA--CA-CATAACTTT-A--AT-CTAGCAACCGTAGTCGTATCTTAGATGCC----TCTC---TC--AAAAG--------------------------------------GAG---GAGGACGAACTGA-GGGTCACATACATGCGAGGGTCGTGTATGT---GC---------GCC--------------CT--TAA-GCACCGCAC----------ACAC--ACAC-----ACACACACAGACA--------------------------C--ACTTGA-----------TGC----------------ACA--CATTCAGAGAC-AT-GAGCAGAAC-----C--GAGGAGACATCACCCAC----ACC-TCATGACCCCAG-----------------------------A--------------CCCATATCAATTAACCATTAATCAACCTTCTT-TTGCAGACA-------------------------------------------GGATTT-CT-CT--TTATGGTTT-------------CATTTCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotal
No Reads
droKik1
GCCTAAAATGG--------------TC-GAT-------GGCG-----------------AAAGG-CAAGTGCTGGACAAACTG-GAGGTAAC-GACTAGCCACAGTGCTCATGGGA-----AGCCT--CTTGTCA--CA-CCTAACTAT-ATATC-CTAGAAAACTTAGTCGTATCTTAGATGCT----CCTC---TC--AAGGC--------------------------------------GAG---GCGGATGCAGTTG-GGGACGCGTACACGCCAGGGCCGTGTATGTG-TGC---------GTC--------------CTC-CGC-ACACC-------CGCTTGCACAC--GCAC-----ACAC------------ACCACACACTCACCACATACA--C--ATATGA-----------TGC----------------ACA------AAGAGAA-AC-GAGCAGAAC-----C--GAGGAGACATCATCCACA--CACC-TCATGATCCCTG-----------------------------ACCC-----------CCTCTATTAATTAATCATTAATTTCCGTTCTTTTTGCAGACA-------------------------------------------GGATCT-CT-CT--TTATGGTTTT------------TATAGCAAGTTCTC--GA--TG--TGTTAGTGACASizeHit CountTotal NormTotal
No Reads
droAna3
GCCTAAGA-GA-------------AGCGAAT-------GAAGATGT-------------AGAGG-CG-TTGCTGGACAAACTG-GAGGTAAT-GATTGGCCACAGTGCTCACGGAA-----AGAAT--C-CGCCA--CA-ACTAACTAATA--AC-A----------AGTAGTATCT-AGATGAG----CCTCCCAAC-TAAAGAGAG---------TTGGAGATGGAGGTGTGATGGGGTTTGAG---GAG-A----------CG-CATGTACATGCAAGGGTCGTGTACATGATGG---------ATC--------------CCCCCAA-ACAGCAGAC----------ACACTCGCAC-----ATAAAC------G--------------------------C--A----ATACCA------TTC----------------ACG--CACACAGAGTC-ACAGATAAGAAC-----C--GAGGAGACATCACCCATGACCATG-CCATCACCACTGA-----------------------CCAAAA--------------TCCGTATT----AACCTTTAACTATTGTTCTT-TTACAGACA-------------------------------------------GGATCT-CTTCTGTATATGGTTT-------------CATTTAAAGTTCTT--GA--TGTGTGTTAGTGACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................TGG---------ATC--------------CCCCCAA-ACAGCAGAC----------ACA............................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................GATGGAGGTGTGATGGGGTTTGAG---GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGA-----------------------CCAAAA--------------TCCGTATT----AACCTTT.........................................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTT--GA--TGTGTGTTAGTG...2011.001001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCACCCATGACCATG-C...................................................................................................................................................................................................................2011.001100000
.............................................................................................GATTGGCCACAGTGCTCACGGAA-----AGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..............................................................................AACTG-GAGGTAAT-GATTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTT--GA--TGTGTGTTAGTGACA2411.001000001
..........................................................................GACAAACTG-GAGGTAAT-GATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTT--GA--TGTGTGTTAGC....1811.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTT--GA--TGTGTGTTAGTGAC.2311.001001000
...................................................................................................................................................................................................................................................................................TGCAAGGGTCGTGTACATGATGG---------ATC--------------C.........................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................................................CATGCAAGGGTCGTGTACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................GAAT-------GAAGATGT-------------AGAGG-CG-TT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................................................................................................................................G-A----------CG-CATGTACATGCAAGGGTCGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
droBip1
GCCTAAGAAGT--------------TCGAAT-------GAAATTGGT-------------GAGG-CG-TTGCTGGACAAACTG-GAGGTAAC-GATTGGCCACAGTGCTCACGGAA-----AGAAT--C-CGCCA--CA-ACTAACTATTA--AC-G----------AGTAGTATCT-AGATGAG----CCTC---CT--GAAGGGCGGGGGGGCTTTTGGAGG-AGAGGTGT--T-GGGTTTGAG---GAG-A----------CG-TATGTACATGCAAGGGTCGTGTACAT---GG---------ATC--------------CCT-TGA-ACAG-GCAC----------TC----GCACATTACACGC------------A--ATA-----------------C--GCA--ATACCA------TTC----------------ACG--CACACAGAGTC-AC-GATAAGAACATCACCGAGAGGAGACATCACCCATGACCATGCCCATGCCCACTGACCAATA-CCGAACGATTCCT-------GA--------------CCCGTATTAA----CCA-TAACCATTGTTCTT-TTACAGACA-------------------------------------------GGATCT-CTTCT--GTATGGTTTGC-----------TTTCTCGAGTTCTC--GA--TGTGTGTTAGTGACASizeHit CountTotal NormTotal
No Reads
dp5
GCCTAACTTGGGCCGGGGAAGGGGAGTGG-----------CAGTGT-AGGGAGG--AGGAGAGCTAAAGTGCTGGACAAACTGCGAGGTAAAAAGCTATCCACAGGGCTCGTTGGAAAGC-ACACTCCC-CTCCA--CAACGTAACTAT-T--AA-GTAGAAAACCTAAT-GTATCTAAGAGTCC----CCTA---TC--CAGA-----------------------------------------G---GAG-A----------CGTGACATACACGCAAGGGTCGTGTATATGGTGGACACCAGACATCCAGACATAATTGACATC-CTAGACATCACACATCCCCATAC--------AC-----AAAAAC------ACATTCGATTCACTTAG--------CC-------------ATAGAAAT--ATCTACACACCCATGCACTC--CCTTAGAGAAGAC-CCGGAGAAT-----C--GAGCAGACATC--CCAT------------AACCAG-------CAACAGAACCAGTACTCCCCCATAA--------------TCCATTGTAATTAATCA---ATTATTGTTCTTTTTACAGTT--------------------------------CTTTGAGAGGCAG--TCTGAT-CC--TTAAGGTTT-------------C-TTGAAAGATCTCCCGT--TG--TGTTAGTGACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGTT--------------------------------CTTTGAGAGGCAG--TC..................................................................2312.0020100100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT------------AACCAG-------CAACAGAACCAGGC.....................................................................................................................................................................................2311.0010100000000
..........................TGG-----------CAGTGT-AGGGAGG--AGGAGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATCTCCCGT--TG--TGTTAG.....2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................CATC-CTAGACATCACACATCCCCAT.................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAAGAC-CCGGAGAAT-----C--G............................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................AG-A----------CGTGACATACACGCAAGGGTCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTT--------------------------------CTTTGAGAGGCAG--TC..................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................G-A----------CGTGACATACACGCAAGGGTCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..CTAACTTGGGCCGGGGAAGGGGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--CCAT------------AACCAG-------CAACAGAAC..........................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTTACAGTT--------------------------------CTTTGAGA...........................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGAC-CCGGAGAAT-----C--GAGC.........................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------C-TTGAAAGATCTCCCGT--TG--TGT........2411.0010100000000
...........................................................................................................................................................................................................................................................................GACATACACGCAAGGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
.....................GGGAGTGG-----------CAGTGT-AGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................................................AAAGTGCTGGACAAACTGCGAGGTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................GCTAAAGTGCTGGACAAACTGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.................................................................................................................................................................................................................................................................................................................................GACATC-CTAGACATCACACATCCCCAT.................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100000
...............................................................................................CTATCCACAGGGCTCGTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAAGAC-CCGGAGAAT-----C--GAGCAG.......................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ATTATTGTTCTTTTTACA......................................................................................................................2011.0010100000000
.........................................................................................................................................................................T-GTATCTAAGAGTCC----CCTA---TC--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................TAG--------CC-------------ATAGAAAT--ATCTACACACCCAT....................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-CCGGAGAAT-----C--GAGCAGACA....................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGCAG--TCTGAT-CC--TTAAGGT..................................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGACATC--CCAT------------AACCA...........................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAGAAGAC-CCGGAGAAT-----C--GAGC.........................................................................................................................................................................................................................................2511.0010000000100
.................................................................................................................................................................................................................................................................................CACGCAAGGGTCGTGTATATGGTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTC--CCTTAGAGAAGAC-CCG...........................................................................................................................................................................................................................................................2111.0010000100000
.........................................................................................AAAAAGCTATCCACAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGAAGAC-CCGGAGAAT-----C--GAGCAGA......................................................................................................................................................................................................................................2711.0010100000000
..........GGCCGGGGAAGGGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
....AACTTGGGCCGGGGAAGGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................GGAAGGGGAGTGG-----------CAGTGT-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCCGT--TG--TGTTAGTGACA2311.0010000001000
droPer2
GCCTAACTTGGGCCTGGGAAGGGGAGTGG-----------CAGTGT-AGGGAGG--AGGAGAGCTAAAGTGCTGGACAAACTGCGAGGTAAAAAGCTATCCACAGGGCTCGTTGGAAAGC-ACACTCCC-CTCCA--CAACGTAACTAT-T--AA-GTAGAAAACCTAAT-GTATCTAAGAGTCC----CCTA---TC--CAGA-----------------------------------------G---GAG-A----------CGTGACATACACGCAAGGGTCGTGTATATGGTGGACACCAGACATCC--------TTGACATC-CTAGACATCACACATCCCCATAC--------AC-----AAAAAC------ACATTCGATTCACTTAG--------CC-------------ATAGAAAT--ATCTACACACCCATGCACTC--CCTTAGAGAAGAC-CCGGAGAAT-----T--GAGCAGACATC--CCAT------------AACCAG-------TAACAGAACCAGTAATCCCCCATAA--------------TCCATTGTAATTAATCA---ATTATTGTTCTTTTTGCAGTT--------------------------------CTTTGAGAGGCAG--TCTGAT-CC--TTATGGTTT-------------C-TTGAAAGTTCTCCCGT--TG--TGTTAGTGACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........GGGCCTGGGAAGGGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
..........................................................................................AAAAGCTATCCACAGGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................TAAAGTGCTGGACAAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................................................................................AGCTATCCACAGGGCTCGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTT-------------C-TTGAAAGTTCTCCCGT--TG--...........2511.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGTTT-------------C-TTGAAAGTTCTCCC...................2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATTATTGTTCTTTTTGCA......................................................................................................................1911.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCCCATAA--------------TCCATTGT....................................................................................................................................................1911.001001000
........................................................................................................................................................................................................................................................................CGTGACATACACGCAAGGGTCGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TTGAAAGTTCTCCCGT--TG--TG.........2111.001010000
..........................................................................................................GCTCGTTGGAAAGC-ACACTCCC-CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................AGAGTCC----CCTA---TC--CAGA-----------------------------------------G---GAG-T----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CC--TTATGGTTT-------------C-TTGAAAGTTCTCCCGT--...............2911.001010000
droWil2
GCTTGAAGGGA--------------TC-------------------------------------------ACAAACCCAAGAG-GAGGTAAATGACTAACCACAGAGCTAAGACGA-----TAAAA--A-AG-TG--GA-GCTACCTGG-A--GA-ATAGCAGCAATTGAAATCCTTAAGAAAT-------------C--AAAAAAAA---------A-----------------CA------GAA---ATCGACAAGT----------------------------------------------------------------------TCCATCCTAGACAGGCACATAC--------AC-----CCAACC------ACATGGCACACACTCAA--------CC-------------ACTCACAC--ACACACACACA--CGCACACACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................A-AG-TG--GA-GCTACCTGG-A--GA-ATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
............................................................................................................................AA--A-AG-TG--GA-GCTACCTGG-A--GA-ATAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.........GA--------------TC-------------------------------------------ACAAACCCAAGAG-GAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..................................................................................................................GA-----TAAAA--A-AG-TG--GA-GCTACCTGG-A--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.........................................................................................................................................................................................................AAAAAAA---------A-----------------CA------GAA---ATCGACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...........................................................................................................CTAAGACGA-----TAAAA--A-AG-TG--GA-GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
......................................................................................................................................................A--GA-ATAGCAGCAATTGAAATCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................G-TG--GA-GCTACCTGG-A--GA-ATAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...........................................................................................ATGACTAACCACAGAGCTAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
......................................................................................GGTAAATGACTAACCACAGAGCTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
droVir3
ACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--GCAC-----ACACAC------A--------------------------C--ATATGATAC--TCTATATAT----------------ATA--CATATATATAT-AT-ATGCTGAGT-----T--TTGCAG-----------------------------------------------------------AA--------------TCTGTATTAATC---CAATTATTATTGTTCTTTTTGCAGACAACTCAATCAATCTGTTAATCAATCAATCAAT------------CGACC--TT-AT--TTATGGTTTATTTTTTTTTTTTC-ATACACATTCTGTTTTCCTG--TG-TAGTGAGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTTCCTG--TG-TAGTGAGA2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGT-----T--TTGCAG-----------------------------------------------------------AA--------------TCTGTAT.....................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AT-ATGCTGAGT-----T--TTGCAG-----------------------------------------------------------AA--------------TCTGT.......................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGACAACTCAATCAATCT.....................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGT-----T--TTGCAG-----------------------------------------------------------AA--------------TCTGTATTAATC---CA...........................................................................................................................................2811.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-ATGCTGAGT-----T--TTGCAG-----------------------------------------------------------A...........................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTTTTCCTG--TG-TAGTGAGA2311.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
GCCTAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCCTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 03:45 PM