ID:

dsi_1250

 Coordinate:

2r:19403325-19403588 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.9 -13.9 -13.6

Flybase annnotation

exon [2r_19403589_19403739_-]; CDS [2r_19403589_19403739_-]; exon [2r_19403025_19403324_-]; CDS [2r_19403025_19403324_-]; intron [2r_19403325_19403588_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCAAAATTCCCCCGTCGATCCGGACTCACTGCATCCGAATCCCAATCGCAATCGGTGGGGCGCAACGCTACAAATGTTTGCTGTGTTCTGATGATCGATTTGGGTGTTTTGTGCTGCAACTTATTCATGAAAAATGAACTAGAAAACGGAGTATTACTTTCCCCGAATCACTTAATTTCGCATTTTTAATGCACAATAACATTTTTAATTTGTTTTATTGCAACAACAATCTGTTTGTCTGTTCCCAGTGAGCTGCGCAAGGGCGTGAGGTGCATCCAGAGCTACACCCGGCGTTGCA
****************************************************************************************************************((.(((((((((((((((..((.((....))..))))))))))....)))))))))...************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR902009
testis
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
....................CAAGGAGGAGGAACTGGAA..................................................................................................................................................................................................................................................................................................................................... 19 1 2 1.00 2 0 2 0 0 0 0 0 0 0
...................CCAAGGAGGAGGAACTGGAAA.................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ATGAGCTGCGCAAGGGCGTGA.............................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..CTTCTCGATTGGCCCGGACAAGAAG................................................................................................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGATGATCGATTTGGGT................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............GGCCCGGCCAAGAAGGAGG............................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CGCAAGGGCGTGAGGTGCATCCAG................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................CGCAATCGGTGGGGCGCA.......................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TGAGCTGCGCAAGGGCGTGAGGTGCA........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................CCAAGGAGGAGGAACTGGAA..................................................................................................................................................................................................................................................................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................ACTCACTGCAACCGAATCGTA.............................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0
..............................................................................................................ATCGCGCTCGGTGGGGCGGAA......................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0
...................CCAAGGAGGAGGAACTGGATA.................................................................................................................................................................................................................................................................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................CTACAAATGTTTGCTGTGAA................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 1 0 0 0 0
...........................................TTTGTCACTAGGTGGCTTTA............................................................................................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0
...................CCAAGGAGGAGGAACTGGTA..................................................................................................................................................................................................................................................................................................................................... 20 2 5 0.20 1 0 1 0 0 0 0 0 0 0
.........................................................................TCCCCCGTCGAGCCGGG.................................................................................................................................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 1 0 0 0 0 0
...................CCAAGGAGGAGGAACTGGTTA.................................................................................................................................................................................................................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0
..................................................................GCAAAATGCCCCCGTA.......................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 1 0 0 1 0 0
..............................................................................................................................................................................................................AGAAATCGGGGTATGACTT........................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0 0
.........................................................................CCCCCCGTCGAGCCGG................................................................................................................................................................................................................................................................................... 16 2 18 0.06 1 0 0 0 1 0 0 0 0 0
..............................GAACGGAAAAGACTTTGTC........................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
...................................................TCAGTCGCTTCCCGGGCAA...................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................................TCGCGCGTCGATCCG.................................................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTGAAGAGCTAACCGGGCCGGTTCTTCCTCCTTGACCTTTTTGAAACAGTCATTCACCGAAGTGCCCGTTTTAAGGGGGCAGCTAGGCCTGAGTGACGTAGGCTTAGGGTTAGCGTTAGCCACCCCGCGTTGCGATGTTTACAAACGACACAAGACTACTAGCTAAACCCACAAAACACGACGTTGAATAAGTACTTTTTACTTGATCTTTTGCCTCATAATGAAAGGGGCTTAGTGAATTAAAGCGTAAAAATTACGTGTTATTGTAAAAATTAAACAAAATAACGTTGTTGTTAGACAAACAGACAAGGGTCACTCGACGCGTTCCCGCACTCCACGTAGGTCTCGATGTGGGCCGCAACGT
*************************************************************************************************************************************************************************************************((.(((((((((((((((..((.((....))..))))))))))....)))))))))...**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
.....................................................................................................................................................................................................................................................................................................................................................GGACTCGATGTGGGCG....... 16 2 20 6.20 124 118 0 0 6 0 0
........................................................................................................................................................AGACTGCTAGCTAAAC.................................................................................................................................................................................................... 16 1 5 5.60 28 0 28 0 0 0 0
.......................................................................................................................................................................................................................................................................................................AGACAAACAGACTAAGGTCAG................................................ 21 3 1 3.00 3 0 0 3 0 0 0
..............................................................................GCGGCTAAGCCTGAGTGA............................................................................................................................................................................................................................................................................ 18 2 3 2.67 8 8 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................GGACTCGATGTGGGC........ 15 1 2 2.50 5 4 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................................................GGACTCGATGTGGGCC....... 16 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................GACTCGATGTGGGCC....... 15 1 2 2.00 4 4 0 0 0 0 0
............................................................................GGGCGGCTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 19 2 4 1.50 6 6 0 0 0 0 0
..............................................................................GCGGCTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 17 2 13 1.23 16 15 0 1 0 0 0
.........................................................................................................................................................GACTGCTAGCTAAAC.................................................................................................................................................................................................... 15 1 11 1.09 12 0 12 0 0 0 0
............................................................................GGGCTGCTAAGCCTGAGTGAA........................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
..........................................................................GGGGGCGGCTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 21 2 2 1.00 2 2 0 0 0 0 0
............................................................................GGGCGGCTAAGCCTGAGTGAA........................................................................................................................................................................................................................................................................... 21 3 4 0.75 3 3 0 0 0 0 0
............................................................................GGGCGGCTAAGCCTGAGTGA............................................................................................................................................................................................................................................................................ 20 2 3 0.67 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TCCATGTGGGCTGCAACG. 18 2 2 0.50 1 0 0 0 0 1 0
..........................................................................GGGGGCGGCTAAGCCTGAGTGAA........................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GGGACTCGATGTGGGC........ 16 2 20 0.45 9 9 0 0 0 0 0
.................................................................................GCTAAGCCTGAGTGA............................................................................................................................................................................................................................................................................ 15 1 7 0.43 3 3 0 0 0 0 0
...............................................................................CGGCTAAGCCTGAGTGA............................................................................................................................................................................................................................................................................ 17 2 12 0.42 5 5 0 0 0 0 0
...............................................................................CGGCTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 16 2 20 0.35 7 6 0 1 0 0 0
...............................................................................CGGCTAGGCCTGAGTG............................................................................................................................................................................................................................................................................. 16 1 3 0.33 1 1 0 0 0 0 0
.............................................................................GGCGGCTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 18 2 6 0.33 2 2 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................GGTCTCGATGTGGGCG....... 16 1 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................GTCTCGATGTGGGCG....... 15 1 7 0.29 2 2 0 0 0 0 0
...........................................................................GGGGCGGCTAAGCCTGAGT.............................................................................................................................................................................................................................................................................. 19 2 4 0.25 1 1 0 0 0 0 0
................................................................................GGCTAGGCCTGAGTGA............................................................................................................................................................................................................................................................................ 16 1 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................CAGACTGCTAGCTAAAC.................................................................................................................................................................................................... 17 2 16 0.19 3 0 3 0 0 0 0
.........................................................................AGGGGGCAGCTATACTTGA................................................................................................................................................................................................................................................................................ 19 3 19 0.16 3 1 0 2 0 0 0
................................................GTCATTGACCGAAGT............................................................................................................................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 1
........................................................................................................................................................................................................................................................AAAAATTACCTGTTATT................................................................................................... 17 1 9 0.11 1 0 0 0 1 0 0
............................................................................GGGCGGCTAAGCCTGAGT.............................................................................................................................................................................................................................................................................. 18 2 9 0.11 1 1 0 0 0 0 0
...........................................................................GGGGCGGGTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0 0
.......................................................ACCGCAGTGCTCGTTCTAA.................................................................................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 1 0 0 0
..............................................................................GCGGCTAAGCCTGAGTGAA........................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GGGTCTCGATGTGGGCT....... 17 2 10 0.10 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................CGTAATAATGATAGGGGCT.................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 1 0
.........................................................................................................................................................................................................................AAAATGAAAGGGGCTTAA................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1
............................................................................GGGTGGCTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0
...............................................................................CTGCTAAGCCTGAGTG............................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GGGTCACTCGACTAGTTC..................................... 18 2 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19403275-19403638 - dsi_1250 GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCAAAAT-TCCCCC----GTCGATCCGGACTCACTGCATCCGAATCCCAATCGCAATC------------GGTGGGGCGCAACGCTACAAATGTTTGCTGTGTTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TTGT---------------GCTGCAACTTATTCATGAAAAATGAACT-AG------------------------------------------------------------------------AAA-----------------------------------------------------ACGGAGTAT---------TA-CTTTCCCCGAATCACTTA-ATTTCGCATTTTTAATG-----------------------------CACAATAACATTTTTAATTTGTTTTATTGCAACAACAATC---------------------------------------------TGT-----------TTGTCTGT-----------TCCCAGTGAGCTGCGCAAGGGCGTGAGGTGCATCCAGAGCTACACCCGGCGTTGCA
droSec2 scaffold_9:2175182-2175544 - GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGACTTCACGGGCAAAAT-TCCCCC----GCCGATCCGGACTCACTGCATCCGAGTCCTAATCGCAATC------------GGTGGGGCGCAACGCTACAAATGTTTGCTGTGTTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TTGT---------------GCTGCAACTTATCCATTAAAAATGAACT-AG------------------------------------------------------------------------AA------------------------------------------------------ACCGAGTAA---------TA-CTTTCCCCGAATCACTTA-ATTTCTAATTTTTAATG-----------------------------AACAATAACTTTTTTAATTTGTTTTATTGCAACAACAATC---------------------------------------------TGT-----------TTGCCTGT-----------TCCCAGTGAGCTGCGCAAGGGCGTGAGGTGCATCCAGAGCTACACCCGGCGTTGCA
dm3 chr2R:18883097-18883462 - GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCAAAAT-TCCCCC----GTCGATCCGGACTCACTGCATCCGAATTCCAATCGCAATC------------GGTGCGGCGCAACGCTACAAATGTTTGCTGTGTTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TTGT---------------GCTGGAACTTATCCATGAAAAATTAACT-AG------------------------------------------------------------------------AA------------------------------------------------------ATCGAGTAA---------TA-CTATCCCCGACTCACTTA-ATTTCGCATTTTTAATT-----------------------------GAAAATAACATTTTTAATTTGTTTTATTGCAACAACAATC---------------------------------------------TTT-----------TTGTCTGTTCC--------TCCCAGTGAGCTGCGCAAGGGCGTGAGGTGCATACAGAGCTATACCCGGCGTTGCA
droEre2 scaffold_4845:20244571-20244931 - GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCGAAAT-TCCCCC----GTCGATCTGGACTCACTGCATCCGAATCCCAATCGCAATC------------TGTGGGGCACAGCAATACAACTGCTTGCTGCGCTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TGGT---------------GCTTGAACTTTGCCATGAAAAATGAACT-AG------------------------------------------------------------------------AA------------------------------------------------------ACTGAGTAA---------TA-CTTTT--CAAATCATTTA-ATTTGGCATTTTAAACT-----------------------------TACAATTACATTTCTAATTTGTTTTATTGAAACAACAATG---------------------------------------------CCT-----------GTGTGCGT-----------TTCCAGTGAGCTGCGCAAGGGAGTGAGGTGCATCCAGAGCTACACCCGCCGTTGCA
droYak3 2R:18843222-18843586 - GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCGAAAT-TCCCTC----GTCGATCTGGATTCACTGCATCCACATCCCAATCGCAATCGCAATCGCAATCTGTGGTTCACAACAATACAACTGTTTGCTGTGCGCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-T----------------------GAACTTATCCATGAAAAATGAATTGAG------------------------------------------------------------------AACTTGAA------------------------------------------------------ACTCAGTAA---------TA-CTTTT--CAAATCATTTA-ATTTTGAATTT------------------------------------ACAATTGCATTTTTAATTTGTTTTATTGCAACAACAATG---------------------------------------------T-T-----------TCGTGTGT-----------TCCCAGTGAGCTGCGCAAGGGAGTGAGGTGCATCCAGAGCTACACACGCCGTTGCA
droEug1 scf7180000409672:6861698-6862126 - AACTTCTCGATTGGCGCGGCCAAGAAGGACGAACTGGACAAACTTTGTCAGTAAGTGGCTTCATGGAAAAAATGTTCCCC----GTCGATCTAGACTCACCAAATCCAAATCCCAAACGCAATC------------TGCTGAGCATA----------------------------GATCGAGTTGGGGT--------------------------------------------------------------TTCTCATTAA--------------------------TAGA-------TAT-AGAAAAATATAGAAATAATATTGATTTCTAAAAATATATCATAGTTTCTCTTTACTTAAATCGGACAT--------------------------CAAAAAGTCTTATTAA-AAATGTTT-------------------CTAAATTTAAT-TATTTTCCAATACACTTTATACTTTATACTTTATACTTTATACTTTATACTTTATACTTTATACTT-----------TTTTTGAATATAT---------TATAATT---------------------------------------------AAT-----------ATTTTTCCTATTTCTTAAACATCAGTGAGCTGCGCAAGGGAGTCAGGTGCATCCAGAGCTACACTCGCCGTTGCA
droBia1 scf7180000301754:4170943-4171260 - AACTTCTCGATTGGACCGGCCAAGAAGGAGGAACTGGACAAACTTTGTCAGTAAGTGGCTGCGCGAATCAAAT-TCCCCC----GTCGATCTG---------TAGCCAAATCCCAATCGCAATC-------------GCTGAGCGAAGGA-----AATACCTAT---TTTTGTATGATCGATTTGGGAATTTTGCGTAAAGAAAAACCAGACAACCTATAACAGTTTATTATAAATATTAAAATCAAATAT--------------------------------------------T--------------------------------------------------------------------------------AA------------------------------------------------------ACCAAATAA---------TG-CTCTGTACCCATCATT-----------------------------------------------------------------------------G--AAAACAATC-------------------------------------------------------------GAATAT-----------TTTCAGTGAGCTGCGCAAGGGCGTGCGGTGCATCCAGAGCTTCACCCGGCGTTGCA
droTak1 scf7180000415411:91416-91902 + AACTTCTCGCTCGGTCCGGAGACCAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCTCCACGGAAC-GAT-TCTGAA----TTCGATCTA----CACCGTATCTAAATCCCAATCGCAATC------------TGTTGAGCACAAGA-----AATGTATAT---TTTCGTTTGATCGATTTGTGGA--------------------------------------------------------------TTTTTGTAATTTTAAAAGAAAAGTTGTAATAACTTGATGA-------TCC-AGAAAAATATA-------------------------TATTTTTGTCTTTC------AAAACCGCTTAG------AAAATAAATTAATATATTAATTAAAAGTCATTTTAATAAATGTTATAATTTTTTAAATTGAGTACAAAATTTAAT--ATTTACTTGAAAAATTTAAAGATCGCAATTTAAACG-----------------------------CATA------------------------G--AAAAAAATCATATAATATGAGTATTAAGGGAAATAGTTTTTAATTTTTCTATTAAATATTTGTAATTATTTTTTAT-----------TTTCAGTGAGCTGCGCAAGGGAGTGAGGTGCATCCAGAGCTACACTCGCCGTTGCA
droEle1 scf7180000491283:22307-22480 + AACTTCACGATTGGCCCGGCCAAGCGGGAGGAATTGGAGGAACTTTGTCAGTAAGTGGCTCCATGGA-AAAAT-TCCCAA----GTCGATCTGGACGCTCTTGATTCAACTCCCAAACGCAATC------------TGTTGAGCACAGCA-TATAAGTGTTCTATGTACTGTGTAGATCGATTTGATGA--------------------------------------------------------------TT-TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780075:15366-15533 - AACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAGAACTTTGTCAGTAAGTGGCTCCATGGA-AAAAT-TCCCCC----GTCGATCTGGACGCTCTGCATCCAACTCCCAAACGCAATC------------TGTTGAGCACGGAA-----AATAAGTGCTCCATTGTGATGATCGATTTTGGAA--------------------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454066:2896525-2896696 - AACTTCTCGATTGGCCCGGCCAGAAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCTCCACCAG--AAATTCCCCCA----CTCGATCTACACTCGGTGCATCCGAATCCTAATCGCAATT------------TGCTGAGCAAAGCC-AACAAATGTTCTGTATCTTTCTGCAGACCATTTGGGGA--------------------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302270:94875-94987 + TATTATTTCTTTTTTACTACTTAATTTCTTATGTTTTCATGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTACATT-----------------------------------------------------------------------------------------------TTATAGCGAGCTTCGCAAGGGTGTTAGATGCATCCAGAGTTACACTCGTCGTTGCA
droAna3 scaffold_13266:15216919-15217018 - GAGTTTTCGATTGGTCCTGCCAAGAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCCCC-----------------CAAAAGTCGATCTGGTCGGCGTTCCT-CGAATCCCAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396385:380451-380550 - GAGTTTTCGATTGGTCCTGCCAAGAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCCCC-----------------CAAAAGTCGATCTGGTCGGCGTTCCT-CGAATCCCAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:17742647-17742744 + GAGTTCTCGATTGGCCCCGCCAAGAAGGAGGAACTGGACAAACTTTGCCAGTAAGTGTGCTCCCGGAGAAAGT-TCC----------GATCCGATCCGATTCGATCCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_31:51092-51191 - GAGTTCTCGATTGGCCCCGCCAAGAAGGAGGAACTGGACAAACTTTGCCAGTAAGTGTGCTCCCGGAGAAAGT-TCC-GA----TCCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATCCAGAGATACT------------
droWil2 scf2_1100000004512:642031-642094 + GAATTTTCAATGGGTCCAGCCAAGAAGGAGGAACTGGATAAACTTTGTCAGTAAGTTGTTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:7052316-7052371 - GAATTTTCGATTGGCGCTGCCAAGAAGGACGAATTGGATAAACTTTGTCAGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:25756746-25756814 - ATCTGCT--------------------------------GCTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCGAGCTGCGCAAGGGCGTGCGCTGCATCCAGAGCTATACGCGTCGCTGCA
droGri2 scaffold_15245:598582-598668 - ATGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---------------------------------------------ATT-----------TTGTTTGTTATCATTCATGCCACAGTGAGCTGAGAAAGGGCGTGCGTTGCATTCAGAGCTATACGCGTCGCTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCAAAAT-TCCCCC----GTCGATCCGGACTCACTGCATCCGAATCCCAATCGCAATC------------GGTGGGGCGCAACGCTACAAATGTTTGCTGTGTTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TTGT---------------GCTGCAACTTATTCATGAAAAATGAACT-AG------------------------------------------------------------------------AAA-----------------------------------------------------ACGGAGTAT---------TA-CTTTCCCCGAATCACTTA-ATTTCGCATTTTTAATG-----------------------------CACAATAACATTTTTAATTTGTTTTATTGCAACAACAATC---------------------------------------------TGT-----------TTGTCTGT-----------TCCCAGTGAGCTGCGCAAGGGCGTGAGGTGCATCCAGAGCTACACCCGGCGTTGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................CTGATGATCGATTTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
............GGCCCGGCCAAGAAGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGGGCGTGAGGTGCATCCAG...................2411.00100010000000000000
.....................................................................................................................CGCAATC------------GGTGGGGCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTGCGCAAGGGCGTGAGGTGCA........................2611.00100010000000000000
......................................................................................................................................................CTACAAATGTTTGCTGTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25100000000000100000
droSec2
GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGACTTCACGGGCAAAAT-TCCCCC----GCCGATCCGGACTCACTGCATCCGAGTCCTAATCGCAATC------------GGTGGGGCGCAACGCTACAAATGTTTGCTGTGTTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TTGT---------------GCTGCAACTTATCCATTAAAAATGAACT-AG------------------------------------------------------------------------AA------------------------------------------------------ACCGAGTAA---------TA-CTTTCCCCGAATCACTTA-ATTTCTAATTTTTAATG-----------------------------AACAATAACTTTTTTAATTTGTTTTATTGCAACAACAATC---------------------------------------------TGT-----------TTGCCTGT-----------TCCCAGTGAGCTGCGCAAGGGCGTGAGGTGCATCCAGAGCTACACCCGGCGTTGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................GATGATCGATTTGGGTG--------------------------------------------------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.........................................................................................................................................................CAAATGTTTGCTGTGTTCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCAAAAT-TCCCCC----GTCGATCCGGACTCACTGCATCCGAATTCCAATCGCAATC------------GGTGCGGCGCAACGCTACAAATGTTTGCTGTGTTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TTGT---------------GCTGGAACTTATCCATGAAAAATTAACT-AG------------------------------------------------------------------------AA------------------------------------------------------ATCGAGTAA---------TA-CTATCCCCGACTCACTTA-ATTTCGCATTTTTAATT-----------------------------GAAAATAACATTTTTAATTTGTTTTATTGCAACAACAATC---------------------------------------------TTT-----------TTGTCTGTTCC--------TCCCAGTGAGCTGCGCAAGGGCGTGAGGTGCATACAGAGCTATACCCGGCGTTGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTATACCCGGCGTTGC.2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCAAGGGCGTGAGGTGCA........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................GGCCAAGAAGGAGGAACTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCTCGATTGGCCCGGCCAAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAGGGCGTGAGGTGCA........................2012.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........GATTGGCCCGGCCAAGAAGGAGGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCGTGAGGTGCATACAGAGCTAT.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAGCTATACCCGGCGTTGCA2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGCGCAAGGGCGTGAGGT...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCAAGGGCGTGAGGT...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGAGCTATACCCGGCG.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGAGCTATACCCGGCGT....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............GCCCGGCCAAGAAGGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAGGGCGTGAGGTGCATACA....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATACCCGGCGTTGC.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GAGGAACTGGAAAAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCAAGGGCGTGAGGTG..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGACTCACTTA-ATTTCGCATTTTTAA.............................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCAAGGGCGTGAGGTGCA........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCAAGGGCGTGAGGTGCAT.......................2411.0010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AACTGGAAAAACTTTGTCAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGTGAGGTGCATACA....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCC--------TCCCAGTGAG..............................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCAAGGGCGTGAGGT...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................GCTGTGTTCTGATGATCGATTTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGCAAGGGCGTGAGGTGCATACA....................2811.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CCGGCCAAGAAGGAGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............GCCCGGCCAAGAAGGAGGAACTGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCAAGGGCGTGAGGTGCATACAGAG.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAATTTGTTTTATTGCT...............................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droEre2
GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCGAAAT-TCCCCC----GTCGATCTGGACTCACTGCATCCGAATCCCAATCGCAATC------------TGTGGGGCACAGCAATACAACTGCTTGCTGCGCTCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-TGGT---------------GCTTGAACTTTGCCATGAAAAATGAACT-AG------------------------------------------------------------------------AA------------------------------------------------------ACTGAGTAA---------TA-CTTTT--CAAATCATTTA-ATTTGGCATTTTAAACT-----------------------------TACAATTACATTTCTAATTTGTTTTATTGAAACAACAATG---------------------------------------------CCT-----------GTGTGCGT-----------TTCCAGTGAGCTGCGCAAGGGAGTGAGGTGCATCCAGAGCTACACCCGCCGTTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCAAGGGAGTGAGGT...........................1812.0020000020
..................................................GTAAGTGGCTTCACGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAACAATG---------------------------------------------CCT-----------GTGTGCGT-----------TT......................................................2511.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGCGCAAGGGAGTGAG.............................2011.0010000100
.................................................AGTAAGTGGCTTCACGGGCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCAAGGGAGTGAGGTGCATCCAGA..................2711.0010000100
...............................................................................................................................................................................................................................................................................................ATGAAAAATGAACT-AG------------------------------------------------------------------------AA------------------------------------------------------ACTGA...............................................................................................................................................................................................................................................................2311.0010010000
.....................................................................................................................CGCAATC------------TGTGGGGCACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.................GGCCAAGAAGGAGGAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....................................................................................................................................................AATACAACTGCTTGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.....................................................................................................................................................................................................................................................................................GAACTTTGCCATGAAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
droYak3
GACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAAAACTTTGTCAGTAAGTGGCTTCACGGGCGAAAT-TCCCTC----GTCGATCTGGATTCACTGCATCCACATCCCAATCGCAATCGCAATCGCAATCTGTGGTTCACAACAATACAACTGTTTGCTGTGCGCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-T----------------------GAACTTATCCATGAAAAATGAATTGAG------------------------------------------------------------------AACTTGAA------------------------------------------------------ACTCAGTAA---------TA-CTTTT--CAAATCATTTA-ATTTTGAATTT------------------------------------ACAATTGCATTTTTAATTTGTTTTATTGCAACAACAATG---------------------------------------------T-T-----------TCGTGTGT-----------TCCCAGTGAGCTGCGCAAGGGAGTGAGGTGCATCCAGAGCTACACACGCCGTTGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----------TCCCAGTGAGCTGCGCAAGGGA..................................2412.00200000020000
...........TGGCCCGGCCAAGAAGGAGGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000
.......................................................................................................................................................................GCGCTGATGATCGATTTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGCATCCAGAGCTA..............2012.00200000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAGGTGCATCCAGAGCTACACA..........2511.00100000010000
.............GCCCGGCCAAGAAGGAGGAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGGGAGTGAGGTGCATCCAGAGCTA..............2911.00100000010000
......................AGAAGGAGGAACTGGAAAAACTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
....................CAAGAAGGAGGAACTGGAAAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG---------------------------------------------T-T-----------TCGTGTGT-----------TCCCAGTGA...............................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCAAGGGAGTGAGGT...........................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGTGAGGTGCATCCA....................1911.00100000010000
............GGCCCGGCCAAGAAGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGGGAGTGAGGTGCATCCAGAG.................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGAGCTACACACGCC......2011.00100000010000
..............CCCGGCCAAGAAGGAGGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG---------------------------------------------T-T-----------TCGTGTGT-----------TCCCAGTGAGCTG...........................................2711.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGTGCATCCAGAGCT...............1911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGAGTGAGGTGCATCCAGA..................2411.00100000010000
.........................................................................................................................................................................GCTGATGATCGATTTGGGTG--------------------------------------------------------------TT-T----------------------GAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.....................................................................................................................CGCAATCGCAATCGCAATCTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................GAACTGGAAAAACTTTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
....................................................................GAAAT-TCCCTC----GTCGATCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGAGCTACACACGCCGTTGC.2511.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGGGAGTGAGGTGCATC......................2111.00100000010000
.......CGATTGGCCCGGCCAAGAAGGAGGAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEug1
AACTTCTCGATTGGCGCGGCCAAGAAGGACGAACTGGACAAACTTTGTCAGTAAGTGGCTTCATGGAAAAAATGTTCCCC----GTCGATCTAGACTCACCAAATCCAAATCCCAAACGCAATC------------TGCTGAGCATA----------------------------GATCGAGTTGGGGT--------------------------------------------------------------TTCTCATTAA--------------------------TAGA-------TAT-AGAAAAATATAGAAATAATATTGATTTCTAAAAATATATCATAGTTTCTCTTTACTTAAATCGGACAT--------------------------CAAAAAGTCTTATTAA-AAATGTTT-------------------CTAAATTTAAT-TATTTTCCAATACACTTTATACTTTATACTTTATACTTTATACTTTATACTTTATACTTTATACTT-----------TTTTTGAATATAT---------TATAATT---------------------------------------------AAT-----------ATTTTTCCTATTTCTTAAACATCAGTGAGCTGCGCAAGGGAGTCAGGTGCATCCAGAGCTACACTCGCCGTTGCASizeHit CountTotal NormTotal
No Reads
droBia1
AACTTCTCGATTGGACCGGCCAAGAAGGAGGAACTGGACAAACTTTGTCAGTAAGTGGCTGCGCGAATCAAAT-TCCCCC----GTCGATCTG---------TAGCCAAATCCCAATCGCAATC-------------GCTGAGCGAAGGA-----AATACCTAT---TTTTGTATGATCGATTTGGGAATTTTGCGTAAAGAAAAACCAGACAACCTATAACAGTTTATTATAAATATTAAAATCAAATAT--------------------------------------------T--------------------------------------------------------------------------------AA------------------------------------------------------ACCAAATAA---------TG-CTCTGTACCCATCATT-----------------------------------------------------------------------------G--AAAACAATC-------------------------------------------------------------GAATAT-----------TTTCAGTGAGCTGCGCAAGGGCGTGCGGTGCATCCAGAGCTTCACCCGGCGTTGCASizeHit CountTotal NormTotal
No Reads
droTak1
AACTTCTCGCTCGGTCCGGAGACCAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCTCCACGGAAC-GAT-TCTGAA----TTCGATCTA----CACCGTATCTAAATCCCAATCGCAATC------------TGTTGAGCACAAGA-----AATGTATAT---TTTCGTTTGATCGATTTGTGGA--------------------------------------------------------------TTTTTGTAATTTTAAAAGAAAAGTTGTAATAACTTGATGA-------TCC-AGAAAAATATA-------------------------TATTTTTGTCTTTC------AAAACCGCTTAG------AAAATAAATTAATATATTAATTAAAAGTCATTTTAATAAATGTTATAATTTTTTAAATTGAGTACAAAATTTAAT--ATTTACTTGAAAAATTTAAAGATCGCAATTTAAACG-----------------------------CATA------------------------G--AAAAAAATCATATAATATGAGTATTAAGGGAAATAGTTTTTAATTTTTCTATTAAATATTTGTAATTATTTTTTAT-----------TTTCAGTGAGCTGCGCAAGGGAGTGAGGTGCATCCAGAGCTACACTCGCCGTTGCASizeHit CountTotal NormTotal
No Reads
droEle1
AACTTCACGATTGGCCCGGCCAAGCGGGAGGAATTGGAGGAACTTTGTCAGTAAGTGGCTCCATGGA-AAAAT-TCCCAA----GTCGATCTGGACGCTCTTGATTCAACTCCCAAACGCAATC------------TGTTGAGCACAGCA-TATAAGTGTTCTATGTACTGTGTAGATCGATTTGATGA--------------------------------------------------------------TT-TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AACTTCTCGATTGGCCCGGCCAAGAAGGAGGAACTGGAAGAACTTTGTCAGTAAGTGGCTCCATGGA-AAAAT-TCCCCC----GTCGATCTGGACGCTCTGCATCCAACTCCCAAACGCAATC------------TGTTGAGCACGGAA-----AATAAGTGCTCCATTGTGATGATCGATTTTGGAA--------------------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AACTTCTCGATTGGCCCGGCCAGAAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCTCCACCAG--AAATTCCCCCA----CTCGATCTACACTCGGTGCATCCGAATCCTAATCGCAATT------------TGCTGAGCAAAGCC-AACAAATGTTCTGTATCTTTCTGCAGACCATTTGGGGA--------------------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TATTATTTCTTTTTTACTACTTAATTTCTTATGTTTTCATGTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTACATT-----------------------------------------------------------------------------------------------TTATAGCGAGCTTCGCAAGGGTGTTAGATGCATCCAGAGTTACACTCGTCGTTGCASizeHit CountTotal NormTotal
No Reads
droAna3
GAGTTTTCGATTGGTCCTGCCAAGAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCCCC-----------------CAAAAGTCGATCTGGTCGGCGTTCCT-CGAATCCCAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..GTTTTCGATTGGTCCTGCCAAGAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.004100030
...............CCTGCCAAGAAGGAGGACCTGGACAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002100010
........GATTGGTCCTGCCAAGAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................AGTAAGTGGCCCC-----------------CAAAAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....TTTCGATTGGTCCTGCCAAGAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....TTCGATTGGTCCTGCCAAGAAGGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
......TCGATTGGTCCTGCCAAGAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.......CGATTGGTCCTGCCAAGAAGGAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..GTTTTCGATTGGTCCTGCCAAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
...............CCTGCCAAGAAGGAGGACCTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............CCTGCCAAGAAGGAGGACCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droBip1
GAGTTTTCGATTGGTCCTGCCAAGAAGGAGGACCTGGACAAACTTTGTCAGTAAGTGGCCCC-----------------CAAAAGTCGATCTGGTCGGCGTTCCT-CGAATCCCAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GAGTTCTCGATTGGCCCCGCCAAGAAGGAGGAACTGGACAAACTTTGCCAGTAAGTGTGCTCCCGGAGAAAGT-TCC----------GATCCGATCCGATTCGATCCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........TGGCCCCGCCAAGAAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
............GGCCCCGCCAAGAAGGAGGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
GAGTTCTCGATTGGCCCCGCCAAGAAGGAGGAACTGGACAAACTTTGCCAGTAAGTGTGCTCCCGGAGAAAGT-TCC-GA----TCCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATCCAGAGATACT------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GAATTTTCAATGGGTCCAGCCAAGAAGGAGGAACTGGATAAACTTTGTCAGTAAGTTGTTTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................AGCCAAGAAGGAGGAACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................................CTGGATAAACTTTGTCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..................GCCAAGAAGGAGGAACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
droVir3
GAATTTTCGATTGGCGCTGCCAAGAAGGACGAATTGGATAAACTTTGTCAGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............GCTGCCAAGAAGGACGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000010000000000000000000000100000000000000000000000000
............GGCGCTGCCAAGAAGGACGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
......................AGAAGGACGAATTGGATAAACTTTGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000010000000000000000000000000000000000000000
..............CGCTGCCAAGAAGGACGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
...........................GACGAATTGGATAAACTTTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
........GATTGGCGCTGCCAAGAAGGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.............GCGCTGCCAAGAAGGACGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.........................AGGACGAATTGGATAAACTTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
ATCTGCT--------------------------------GCTCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAGCGAGCTGCGCAAGGGCGTGCGCTGCATCCAGAGCTATACGCGTCGCTGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGCGTGCGCTGCATCCAGAGCT...............2712.002100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATACGCGTCGCTGC.1812.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTATACGCGTCGCTGC.1912.002100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCCAGAGCTATACGC.........2012.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCCAGAGCTATACGCGTC......2212.002100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCCAGAGCTATACGCGTCGCTG..2711.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGCGTGCGCTGCATCCAGA..................2211.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCTGCATCCAGAGCT...............1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCGCTGCATCCAGAGCT...............2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTGCATCCAGAGCTATACGCG........2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCCAGAGCTATACGCGTCGCT...2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGCTATACGCGTC......1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGCATCCAGAGCTATACGC.........2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCCAGAGCTATACGC.........2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCCAGAGCTATACGCGTCGC....2611.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCCAGAGCTATACGC.........1911.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCAAGGGCGTGCGCT...........................1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAAGGGCGTGCGCTGCATCCA....................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGAGCTATACGCGTCGC....2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCCAGAGCTATACGCGTCGCTGC.2811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCCAGAGCTATACGCGTCGC....2411.001100000
droGri2
ATGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---------------------------------------------ATT-----------TTGTTTGTTATCATTCATGCCACAGTGAGCTGAGAAAGGGCGTGCGTTGCATTCAGAGCTATACGCGTCGCTGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:28 AM