ID:

dsi_12489

 Coordinate:

3r:26840915-26841064 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.4 -18.8 -18.7 -18.5

Flybase annnotation

exon [3r_26841065_26841152_+]; five_prime_UTR [3r_26841065_26841152_+]; intron [3r_26839835_26841064_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGCACACTTCGGCTCCATTCGTTTCTGTCTGGGGCTCGTTATTGATTTTTCGCCCGGTGCAGTTCGGCAGAGGGATATACACGGCAGTCTTTAACCAACAGACACTTGGCCCGGTCGTGGTACGGCTGCAGAGTACGGAAGATCCGCGTAGAGTTCAAAAACTGTCATTTTTATCACAACGATTTCCTTCTAATTCTAGGATATAGCGACGGGTGGATTCGTGATCAGTTTTTGATAGCGCAGCGTTGC
***************************************************((.((.((((....((((...(((....................((((.......))))))).))))..)))))).))************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
.............................................................................................................GCCCGGTCGTGGTACGGCTG......................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0
.............................................................................................................GCCCGGTCGTGGTACGGC........................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGGATATAGCGACGGGTGGATTCGTGA......................... 28 0 1 2.00 2 0 1 0 1 0 0 0 0
............................................................................................................GGCCCGGTCGTGGTACGGCT.......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................TTGATTTTTCGCCCGGTGCAGTTCGGC..................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................TGATTTTTCGCCCGGTGCAGTTCGGC..................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................CGGCTGCAGAGTACGGAAGATCCG....................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0
...................................................................................................................TCGTGGTACGGCTGCAGAGTACGGA.............................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................ACTTGGCCCGGTCGTGGTACGG............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
....ACACTTCGGCTCCATTCGTTT................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................AGAGTACGGAAGATCCGCGTAGAGT............................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................CTTGGCCCGGTCGTGGTACGGCTG......................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................TCAAAACCTGTCATTTTTATCACAACGA................................................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................TAGGATATAGCGACGGGTGGATTCGT........................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
...................................................CGCCCGGTGCAGTTCGGCAGAGG................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................TGCAGTGTACGGAACATC......................................................................................................... 18 2 4 0.75 3 1 0 0 0 0 2 0 0
..................................................TCGCTTGGTGCAGTTCGGGA.................................................................................................................................................................................... 20 3 3 0.67 2 0 0 0 2 0 0 0 0
............................................................................................................AGACCGGTCGTGGTAC.............................................................................................................................. 16 2 7 0.43 3 0 3 0 0 0 0 0 0
.................GTTCGTTTCTGTCAGGGG....................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 1
................................................................TCGGTAGTGGGATATA.......................................................................................................................................................................... 16 2 20 0.20 4 0 0 4 0 0 0 0 0
.................GTTCGTTTCTGTCGGGGG....................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0
.............................................................................................................................GATGCAGTGTACGGAACATC......................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0
....................CGTTTCTGTCAGGGGCTCCA.................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 1
........................................................................................................ACTCGGCCCGGCCGTGGGA............................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 1
............................................................................................................GGCCCGGTCGTGAGAC.............................................................................................................................. 16 2 9 0.11 1 0 0 1 0 0 0 0 0
............................TCCGAGGCTCGTTATTG............................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 1 0 0 0 0 0
.................GTTCGTTTCTGTCAGGG........................................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................AGGATAGAGCGACGGT.................................... 16 2 15 0.07 1 0 1 0 0 0 0 0 0
.................GTTCGTTTCTGTCAGGGGG...................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1 0 0 0
.....................................................................................................................................GTACGGAAGACCCGCT..................................................................................................... 16 2 17 0.06 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CAGGATAGAGCGACGG..................................... 16 2 17 0.06 1 0 1 0 0 0 0 0 0
.......................................................................................................AACTTGGACAGGTCGTGGT................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1
................................................................TCGGTAGTGGGATATACC........................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TCTAGGATGTAGCGA........................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TGCGTGTGAAGCCGAGGTAAGCAAAGACAGACCCCGAGCAATAACTAAAAAGCGGGCCACGTCAAGCCGTCTCCCTATATGTGCCGTCAGAAATTGGTTGTCTGTGAACCGGGCCAGCACCATGCCGACGTCTCATGCCTTCTAGGCGCATCTCAAGTTTTTGACAGTAAAAATAGTGTTGCTAAAGGAAGATTAAGATCCTATATCGCTGCCCACCTAAGCACTAGTCAAAAACTATCGCGTCGCAACG
*************************************************************************************************************************((.((.((((....((((...(((....................((((.......))))))).))))..)))))).))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
........................................................................................................................................GCCTTCTAGGCGCATCTCAAGTTTT......................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................GGTTGTCTGTGAACCGGGCCAGCA................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................CCCTATATGTGCCGTCA................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................GGCGCATCTCAAGTTTTTGACAGT.................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................................................................CGTCTCATGCCTTCTAGGCGC..................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................................ATGCCTTCTAGGCGCATCTCAATTTT.......................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................CCTTCTCGGCGAATCTCAA.............................................................................................. 19 2 2 1.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................TTTGGCAGCAAAAATAGTGT....................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................TGTGCCGTCAGAAATTGGTTG...................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AGTGTTGCTAAAGGAAGATTAAGATCCT................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AGTATAGTGTTGCTAAAGGAAA........................................................... 22 3 2 1.00 2 0 0 2 0 0 0 0 0
...............................................................................................................................................AGGCGCATCTCAAGTTTTTGACAGT.................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................GTATAGTGTTGCTAAAGGAAA........................................................... 21 3 5 0.40 2 0 0 2 0 0 0 0 0
.........................................................................................................................................CCTGCTGGGCGAATCTCAA.............................................................................................. 19 3 3 0.33 1 1 0 0 0 0 0 0 0
.............................................................................................................................................CTAGGCGAATCTCAA.............................................................................................. 15 1 12 0.33 4 4 0 0 0 0 0 0 0
........................................................................................................................................................ACAAGTTTTTGACAGATAAAAT............................................................................ 22 3 4 0.25 1 0 0 0 1 0 0 0 0
............................................................................................................................................TCTAGGCGAATCTCAA.............................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TTATAGTGTTGCTAAAGGAAA........................................................... 21 3 10 0.20 2 0 0 2 0 0 0 0 0
...........................................................................................................................................TTCTGGGCGAATCTCAA.............................................................................................. 17 2 12 0.17 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................TAGTGTTGATAAAGGAAT........................................................... 18 2 14 0.07 1 0 1 0 0 0 0 0 0
.....................................................................................................................................CTTGCCTTCTCGGAGCATC.................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 1 0 0
.................................................AGGCGGGCCACGTCAGG........................................................................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 1 0
.............................................................................................................................CCACGCCTCAGGCCTTCTA.......................................................................................................... 19 3 18 0.06 1 0 0 1 0 0 0 0 0
...........................................................................................................................................CTCTAGGCGAATCTCAA.............................................................................................. 17 2 18 0.06 1 1 0 0 0 0 0 0 0
.....................................................................................................................................CTTGCCTTCTAGGAGCATA.................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................GCCATATCGCTGCCCGCC................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:26840865-26841114 + dsi_12489 AC--GC-A---CACTTC-----------GGCTC------------CATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCAGTTCGGC--------AGAGGGATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTG-GCCCGGTCGT-GGTACGGCTGCA--GAGTACGGAAG-------------ATCCGCG-----------------TAGAGTTCAAAAACT------GTCA------TTTTTATCACA-AC--GATTTCCTT----------------------CTAATTCTAGGAT-ATAGCGACGGGTGGATT--CGTGATCAGTTTTTGATAGCG---CAGCGTTGC
droSec2 scaffold_31:219852-220101 + AC--GC-A---CACTTC-----------GGATC------------CATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCACTTCGGC--------AGAGGGATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTA-GCCCGGTCGT-GGTCTGGATGCA--GAGTACGGAAG-------------ATCCGCG-----------------TAGAGTTCAAAAACT------GTCA------TTTTTATCACA-AC--GATTTCCTT----------------------CTATTTCTAGGAT-ATAGCGACGGGTGGATT--CGTGATCAGTTTTTGATAGCG---CAGCGTTGC
dm3 chr3R:27565300-27565548 + AC--GC-A---CACTTC-----------GGCTC------------CATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCACTTCGGC--------AGAG-GATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTG-GCCCGGTCGT-GGTCCGGCTGCA--GAGTACGGAAG-------------ATCCGCA-----------------TAGAGTTTAAAAACT------GCCA------TTTTTATGACA-AC--GATTTCCTT----------------------CTAATTCTAGGAT-ATAGCGTCGCGTGGGTT--TGTGATCAGTTTCTAAGTGCG---CAGCGTTGC
droEre2 scaffold_4820:410358-410609 - AC--GC-A---CACTTC-----------GGCTC------GA----AGTTCGTTT-CTGTCTGGGGCTCGG----TATTGATTTTTCGCCCGGTGCACATCGGC--------AGTGGGATATAC--------ACGCCAGTCTTCATT-CAACAGACACTTG-GCCAGGTCGT-GGTCCGGCTGCA--GAGTACGGAAA-------------ATCCGTA-----------------TAGAAGTAATAAACT------GTAA------TTTTTATCACA-AC--GTTTTCCTT----------------------CTAATTCTAGGAT-ATTGCGTCCAGTGGATT--TGTGATCAGTTTTTGATAGCA---CAGCGTTGC
droYak3 3R:28499865-28500116 + AC--GC-A---CACTTC-----------GGCTCCA----------AGTTCGTTT-CTGTCTGGGGCTCGG----TATCGATTTTTCGCCCGGTGCACTTCGGC--------AGAGGGATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTG-GATTGGTCGT-GGTCCGGCTGCA--GAGTACGGAAA-------------CTCCGTA-----------------TTGAAGTCATAAACT------GTCA------TTGTCATCTCA-AC--GTTTTCCTT----------------------ATAATTCCAGGAT-ATTGCGTCCAGTGGATT--TGTGGTCAGTTTTTGATAGCA---CTGCGTTGC
droEug1 scf7180000409488:339590-339843 - TC--GC-A---GACTTC-----------GGCTC------------GATTCGTTT-TTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGAAAATCGGC--------GGAGGGATATAT--------ACGCCAGTCTTTAAC-CGACAGACACTTG-GCCCGGTCGT-TTTTCGGCTGCA--GAGTACGGAAA-------------GCCCTCTTAAA--------------CGGTGTTACAAATT------AACA------TTTTTTTCTTAAAA--TACTATCTT----------------------TTGTTTTTAGGAT-ATAGCGTCCAGTGGACT--TGTGATCAGTTTTCGATAGCT---CAGCATCGC
droBia1 scf7180000302035:229145-229388 + GCTCGC-G---GACTTC-----------GGCTT------------GACTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGC-CGGTGCAAGTCGAC--------GGAGGGATATAT--------TCGGCAGTCTTCAAC-CGACAGACACTTG-GCCTGGTCGT-TGTCCGGCTCTA--GAGTACGGAG----------------CCTTG-----------------TGAACTTCATAGGTT------CCCA------GCTTTTTA--A-AA--GATTT--TT----------------------CCATTTCCAGGAT-TTAGCGTCCACTGGGCT--TGTGATCGGTTTTTGTTTGCA---CAGCATCGC
droTak1 scf7180000415712:651480-651725 + TC--GC-A---GACTTC-----------GGCTC------------GATTCGCTT-CTGTCTGGGTCTCAT----TATTGATTTTTCGCCCGGTGCAAATCGGC--------CGAGGAATATAT--------ACGACAGTCTTTAAC-CGACAGACACTCGAGCCTGGTCGT-TGTCCGGCTGCA--AAGTGCGGAAA-------------AACCC-----------------------GTTTATAAACT------CTCA------TA-CAATTACA-AT--ATTTTCCC-----------------------TAATTTCTAGGATAATTGCGTCCAGAGGATT--TGTGATCTGTTTTTGTTAGCTCT-CAGCATCTG
droEle1 scf7180000491194:1609728-1609992 + TC--GC-A---GACTTC-----------GGCTC------------GATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCAAATCGGC--------GGAGAGATATAT--------ACGGCAGTCTTTAAC-CGACGGACACTTG-GCCTGGTTGTTTGACCGGCAGCA--GAGTACGAAAA--------------TCTATC-----------------ATTATTCTTTGAACT------ATCT------TTTATATCTTA-CT--GAATTTTTTCTTATTTTTTTTT-------TTTAATATCTAGGAT-TTAACGTCGAGTGGTTT--TGTGATCAGTTTTTAAAAGCT---CAGCATCGC
droRho1 scf7180000779322:130828-131084 - TC--GT-A---GACTTC-----------GGCTC------------GAATCGTTT-ATGTCTGTGGCTCGT----TATTGATTTTTCACCCGGTGCAAATCGGC--------GGAGAGATATAT--------ACGGCAGTCTTTAAC-CGACGGACACTTG-GCTTGGTCGTTTGACCGGCAGCA--GAGTACGGAAA-------------ACTATCA-----------------AAAAAGCTATAACCTACCTATAACA------TTAT--TCTTA-CT--TAATTTTTT----------------------TAATTTCAAGGAT-ACAGCGTCGAGTGGATTTTTGTATTCAGTTTTTGAAAGCT---CAGCATCGC
droFic1 scf7180000454114:251575-251826 + TC--GC-A---GACTTC-----------GGCTC------------GATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCAAATCGGC--------GAAGAGATATAT--------ACGGCAGTCTTTAAA-CAACGGACACTTG-GTTTAGTCGT-GGTCTGGCTGCA--GAGTACGGAAA-------------AGACACAAAAACCAAAT-------TGGAAG--------T------ACACCTTTAATGTA-------------T-TT---------TTTTGTTG-------TTTAACTTCTAGGAT-ATAGCGTCCAGTGGAAT--TGTGATCACT-TTTGATAGCT---CTACATCGG
droKik1 scf7180000302810:827461-827738 + GC--TCCGGTTCTCTTC-----------GGCTC------------TGTTCGTTTTCAGTCTGG-GCTCGT----TATTGATTTTTCACCCGGTGCAAATCGGT--------ACA----TCTCCTCCGCATTACGGCAGTCTTCAACCCGACGGACACTTG-GCTTGGTCGT-TGTCCGGGTTCAAAAAGTACGGAAG---------GAA-AACAC-TTGCA------ATGCATATAGACATTA---TTT------CACA------ATTTTCTG-CA-ACACATTTTTCT---------CTCTG---------TTTTTTCCAGGAAAATTGCGTCCTGTGGATT--TGTCATCAGTT-TTGCTAGCCAA-AAGCAAAGC
droAna3 scaffold_12911:3525098-3525380 - TC--GC-G---GACTGTGCCGGTGACTGTGCGCGTTC--------TGTTCGTTTCCCGTCTGGGGCTCGTCGTATATTGATTTTTCGGCCGGTGCAGGGCAACCAAAAACCG--GAGATATAC--CGGAGACTGGTAGTCTTCAGC-CGACTTT------------CTCAT-TGTCCGGGTCTA--GAGTACGGGCTCAGCATTAAGAAAATCAATT-----------------CT------GTGG-GT------GTAATTTTCATTTTTTTT--------------CTT-----------TGAAACCCTTTCACATTGCAGGTG-ATTGCGTCTAGTGGACT--TGTGA--GGTTTTTGATAGAAAATCAGC-TCGT
droBip1 scf7180000396640:388512-388765 - TC--GC-G---AACTGT-----------G-CGC--------GTTCTGTTCGTTTCCCGTCTGGGGCTCGTCGTATATTGATTTTTCGGCCGGTGCAGGGCAACCAAAAACCG--GAGATATAC--C----ACTGGTAGTCTTCAGT-CGACTTT------------CTCAT-TGTCCGGGTCTA--GATTACGGGCTCCAAATTAGGAAAATCAATT-----------------CT------GTGG-GT------GTAATTCTGATT---------------TTTTCACC----------------------ATCATTGCAGGTG-ATTGCGTCTAGTGGACT--TGTGA--GGTTTTTGATAGACAACCAGC--TCG
dp5 2:16538545-16538613 - AGCTGC-GGCT------GCCACACACTCGGCTCCAACTCGGGT----TCTGTTT-CTGTCTGGGGCTCGT----TATTGATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:3858488-3858556 + AGCTGC-GGCT------GCCACACACTCGGCTCCAACTCGGGT----TCTGTTT-CTGTCTGGGGCTCGT----TATTGATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AC--GC-A---CACTTC-----------GGCTC------------CATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCAGTTCGGC--------AGAGGGATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTG-GCCCGGTCGT-GGTACGGCTGCA--GAGTACGGAAG-------------ATCCGCG-----------------TAGAGTTCAAAAACT------GTCA------TTTTTATCACA-AC--GATTTCCTT----------------------CTAATTCTAGGAT-ATAGCGACGGGTGGATT--CGTGATCAGTTTTTGATAGCG---CAGCGTTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................GCCCGGTCGT-GGTACGGCTG....................................................................................................................................................................................................2013.00330000000000000000
.................................................................................................................................................................GCCCGGTCGT-GGTACGGC......................................................................................................................................................................................................1812.00220000000000000000
...............................................................................................................................................................................................................................................................................................................................TAGGAT-ATAGCGACGGGTGGATT--CGTGA............................2812.00200000000110000000
...............................................................................................................................................................G-GCCCGGTCGT-GGTACGGCT.....................................................................................................................................................................................................2011.00110000000000000000
............................................................................TTGATTTTTCGCCCGGTGCAGTTCGGC--------...........................................................................................................................................................................................................................................................................2711.00100000000100000000
.............................................................................TGATTTTTCGCCCGGTGCAGTTCGGC--------...........................................................................................................................................................................................................................................................................2611.00100000000010000000
................................................................................................................................................................................CGGCTGCA--GAGTACGGAAG-------------ATCCG...................................................................................................................................................................2411.00100100000000000000
.......................................................................................................................................................................TCGT-GGTACGGCTGCA--GAGTACGGA.......................................................................................................................................................................................2511.00100000000001000000
...........................................................................................................................................................ACTTG-GCCCGGTCGT-GGTACGG.......................................................................................................................................................................................................2211.00110000000000000000
.......A---CACTTC-----------GGCTC------------CATTCGTTT-...................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......................................................................................................................................................................................A--GAGTACGGAAG-------------ATCCGCG-----------------TAGAGT..........................................................................................................................................2511.00100000000001000000
............................................................................................................................................................CTTG-GCCCGGTCGT-GGTACGGCTG....................................................................................................................................................................................................2411.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................TAGGAT-ATAGCGACGGGTGGATT--CGT..............................2611.00100000010000000000
.....................................................................................CGCCCGGTGCAGTTCGGC--------AGAGG......................................................................................................................................................................................................................................................................2311.00100000000010000000
droSec2
AC--GC-A---CACTTC-----------GGATC------------CATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCACTTCGGC--------AGAGGGATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTA-GCCCGGTCGT-GGTCTGGATGCA--GAGTACGGAAG-------------ATCCGCG-----------------TAGAGTTCAAAAACT------GTCA------TTTTTATCACA-AC--GATTTCCTT----------------------CTATTTCTAGGAT-ATAGCGACGGGTGGATT--CGTGATCAGTTTTTGATAGCG---CAGCGTTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................CGT-GGTCTGGATGCA--GAG.............................................................................................................................................................................................1813.0030003
.................................................................................................................................................................GCCCGGTCGT-GGTCTGGATGCA--GAGT............................................................................................................................................................................................2611.0010001
............................................................................................................................................................................................................................................................................................................................................ACGGGTGGATT--CGTGATC..........................1811.0011000
........................................................................................................................................................................CGT-GGTCTGGATGCA--GAGT............................................................................................................................................................................................1911.0010001
..................................................................................................................................................................CCCGGTCGT-GGTCTGGATGCA--GAG.............................................................................................................................................................................................2411.0010001
...........................................................................................................................................................................................................................................................................................................................................GACGGGTGGATT--CGTGATCA.........................2011.0011000
............................................................................................................................................................CTTA-GCCCGGTCGT-GGTCTGGATGC...................................................................................................................................................................................................2511.0010001
...................................................................................................................................................................................ATGCA--GAGTACGGAAG-------------ATC.....................................................................................................................................................................1911.0010001
.................................................................................................................................................................................GGATGCA--GAGTACGGAAG-------------ATCCGCG-----------------................................................................................................................................................2511.0010100
...............................................TTCGTTT-CTGTCTGGGGCTCG.....................................................................................................................................................................................................................................................................................................................2111.0010001
dm3
AC--GC-A---CACTTC-----------GGCTC------------CATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCACTTCGGC--------AGAG-GATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTG-GCCCGGTCGT-GGTCCGGCTGCA--GAGTACGGAAG-------------ATCCGCA-----------------TAGAGTTTAAAAACT------GCCA------TTTTTATGACA-AC--GATTTCCTT----------------------CTAATTCTAGGAT-ATAGCGTCGCGTGGGTT--TGTGATCAGTTTCTAAGTGCG---CAGCGTTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................T------GCCA------TTTTTATGACA-AC--GATTTCCT.........................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................A--GAGTACGGAAG-------------ATCCGCA-----------------................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
..................................................................................................................................................................................GCTGCA--GAGTACGGAAG-------------A.......................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CGCGTGGGTT--TGTGATCA.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................T-GGTCCGGCTGCA--GAGTA...........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................................................CGT-GGTCCGGCTGCA--GAG.............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................TCGCCCGGTGCACTTCGGC--------AGAG-GA....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTTATGACA-AC--GATTTCCTT----------------------C.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................T-ATAGCGTCGCGTGGGTT--TGTGAT...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CGGTCGT-GGTCCGGCTGCA--GAG.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................CTGCA--GAGTACGGAAG-------------AT......................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................TGATTTTTCGCCCGGTGCACTTCGGC--------A..........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TAGCGTCGCGTGGGTT--TGTG.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................CA-----------------TAGAGTTTAAAAACT------GCCA------TT...............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AGCGTCGCGTGGGTT--TG...............................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GCGTCGCGTGGGTT--TGTGATCA.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TCGT-GGTCCGGCTGCA--GAGTAC..........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GGTCGT-GGTCCGGCTGCA--GATC............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TCGT-GGTCCGGCTGCA--GAGT............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................................................................................................................................GAT-ATAGCGTCGCGTGGGTT--TG...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TGTCTGGGGCTCGT----TATTGATTTTT.....................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GTCGCGTGGGTT--TGTGATCAG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AGTTTCTAAGTGCG---CAGCG....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................................................................................................................CGCGTGGGTT--TGTGATCAGT.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGGGTT--TGTGATCAGTTTCTAAGTGC.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ATAGCGTCGCGTGGGTT--TGTGATATC........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CTTG-GCCCGGTCGT-GGTCCGGCTGC...................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TGTCTGGGGCTCGT----TATTGAT.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................CTAATTCTAGGAT-ATAGCGTCGCGTG.......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTTTCGCCCGGTGCACTTCGGC--------AGA........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................GCTGCA--GAGTACGGAAG-------------AT......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................GCCCGGTCGT-GGTCCGGCTGCA--GAG.............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGACA-AC--GATTTCCTT----------------------CTA...............................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GCTGCA--GAGTACGGAAG-------------ATCC....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................GTCGT-GGTCCGGCTGCA--GAGT............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................GCCCGGTCGT-GGTCCGGC......................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TTCTAGGAT-ATAGCGTCGCGTGGG.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CTC------------CATTCGTTT-CTGTCT.............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................AGCGTCGCGTGGGTT--TGTGATC..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ATTGATTTTTCGCCCGGTGCACTTCGGC--------...........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CGGTGCACTTCGGC--------AGAG-GGA...................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................GCTCGT----TATTGATTTTGT....................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000
droEre2
AC--GC-A---CACTTC-----------GGCTC------GA----AGTTCGTTT-CTGTCTGGGGCTCGG----TATTGATTTTTCGCCCGGTGCACATCGGC--------AGTGGGATATAC--------ACGCCAGTCTTCATT-CAACAGACACTTG-GCCAGGTCGT-GGTCCGGCTGCA--GAGTACGGAAA-------------ATCCGTA-----------------TAGAAGTAATAAACT------GTAA------TTTTTATCACA-AC--GTTTTCCTT----------------------CTAATTCTAGGAT-ATTGCGTCCAGTGGATT--TGTGATCAGTTTTTGATAGCA---CAGCGTTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................TTGCGTCCAGTGGATT--TGTGATCA.........................2411.0011000000
..........................................................................................................................................................................T-GGTCCGGCTGCA--GAGTA...........................................................................................................................................................................................1811.0010000010
.....................................................................................................................................................ACAGACACTTG-GCCAGGTCGT-GGTC..........................................................................................................................................................................................................2511.0010000010
...........................................................................................................................................................ACTTG-GCCAGGTCGT-GGT...........................................................................................................................................................................................................1811.0010000010
........................................................................................................................................................................................................................................................................................................................................TGCGTCCAGTGGATT--TGTGATCA.........................2311.0011000000
....................................................................................................................................................................................................................................................................................................................................T-ATTGCGTCCAGTGGATT--TGTGATCA.........................2611.0010000010
........................................................................................................................................................................CGT-GGTCCGGCTGCA--GAG.............................................................................................................................................................................................1811.0010000010
droYak3
AC--GC-A---CACTTC-----------GGCTCCA----------AGTTCGTTT-CTGTCTGGGGCTCGG----TATCGATTTTTCGCCCGGTGCACTTCGGC--------AGAGGGATATAC--------ACGGCAGTCTTTAAC-CAACAGACACTTG-GATTGGTCGT-GGTCCGGCTGCA--GAGTACGGAAA-------------CTCCGTA-----------------TTGAAGTCATAAACT------GTCA------TTGTCATCTCA-AC--GTTTTCCTT----------------------ATAATTCCAGGAT-ATTGCGTCCAGTGGATT--TGTGGTCAGTTTTTGATAGCA---CTGCGTTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................TCCAGTGGATT--TGTGGTCA.........................1911.00100000010000
...........................................................................................................................................................ACTTG-GATTGGTCGT-GGTCC.........................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................AGGAT-ATTGCGTCCAGTGGA.....................................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................ATTGCGTCCAGTGGATT--TGTGGTC..........................2411.00100000100000
........................................................................................................................................................................................................................................................................................................................................TGCGTCCAGTGGATT--TGTGGT...........................2111.00100001000000
droEug1
TC--GC-A---GACTTC-----------GGCTC------------GATTCGTTT-TTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGAAAATCGGC--------GGAGGGATATAT--------ACGCCAGTCTTTAAC-CGACAGACACTTG-GCCCGGTCGT-TTTTCGGCTGCA--GAGTACGGAAA-------------GCCCTCTTAAA--------------CGGTGTTACAAATT------AACA------TTTTTTTCTTAAAA--TACTATCTT----------------------TTGTTTTTAGGAT-ATAGCGTCCAGTGGACT--TGTGATCAGTTTTCGATAGCT---CAGCATCGCSizeHit CountTotal NormTotal
No Reads
droBia1
GCTCGC-G---GACTTC-----------GGCTT------------GACTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGC-CGGTGCAAGTCGAC--------GGAGGGATATAT--------TCGGCAGTCTTCAAC-CGACAGACACTTG-GCCTGGTCGT-TGTCCGGCTCTA--GAGTACGGAG----------------CCTTG-----------------TGAACTTCATAGGTT------CCCA------GCTTTTTA--A-AA--GATTT--TT----------------------CCATTTCCAGGAT-TTAGCGTCCACTGGGCT--TGTGATCGGTTTTTGTTTGCA---CAGCATCGCSizeHit CountTotal NormTotal
No Reads
droTak1
TC--GC-A---GACTTC-----------GGCTC------------GATTCGCTT-CTGTCTGGGTCTCAT----TATTGATTTTTCGCCCGGTGCAAATCGGC--------CGAGGAATATAT--------ACGACAGTCTTTAAC-CGACAGACACTCGAGCCTGGTCGT-TGTCCGGCTGCA--AAGTGCGGAAA-------------AACCC-----------------------GTTTATAAACT------CTCA------TA-CAATTACA-AT--ATTTTCCC-----------------------TAATTTCTAGGATAATTGCGTCCAGAGGATT--TGTGATCTGTTTTTGTTAGCTCT-CAGCATCTGSizeHit CountTotal NormTotal
No Reads
droEle1
TC--GC-A---GACTTC-----------GGCTC------------GATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCAAATCGGC--------GGAGAGATATAT--------ACGGCAGTCTTTAAC-CGACGGACACTTG-GCCTGGTTGTTTGACCGGCAGCA--GAGTACGAAAA--------------TCTATC-----------------ATTATTCTTTGAACT------ATCT------TTTATATCTTA-CT--GAATTTTTTCTTATTTTTTTTT-------TTTAATATCTAGGAT-TTAACGTCGAGTGGTTT--TGTGATCAGTTTTTAAAAGCT---CAGCATCGCSizeHit CountTotal NormTotal
No Reads
droRho1
TC--GT-A---GACTTC-----------GGCTC------------GAATCGTTT-ATGTCTGTGGCTCGT----TATTGATTTTTCACCCGGTGCAAATCGGC--------GGAGAGATATAT--------ACGGCAGTCTTTAAC-CGACGGACACTTG-GCTTGGTCGTTTGACCGGCAGCA--GAGTACGGAAA-------------ACTATCA-----------------AAAAAGCTATAACCTACCTATAACA------TTAT--TCTTA-CT--TAATTTTTT----------------------TAATTTCAAGGAT-ACAGCGTCGAGTGGATTTTTGTATTCAGTTTTTGAAAGCT---CAGCATCGCSizeHit CountTotal NormTotal
No Reads
droFic1
TC--GC-A---GACTTC-----------GGCTC------------GATTCGTTT-CTGTCTGGGGCTCGT----TATTGATTTTTCGCCCGGTGCAAATCGGC--------GAAGAGATATAT--------ACGGCAGTCTTTAAA-CAACGGACACTTG-GTTTAGTCGT-GGTCTGGCTGCA--GAGTACGGAAA-------------AGACACAAAAACCAAAT-------TGGAAG--------T------ACACCTTTAATGTA-------------T-TT---------TTTTGTTG-------TTTAACTTCTAGGAT-ATAGCGTCCAGTGGAAT--TGTGATCACT-TTTGATAGCT---CTACATCGGSizeHit CountTotal NormTotal
No Reads
droKik1
GC--TCCGGTTCTCTTC-----------GGCTC------------TGTTCGTTTTCAGTCTGG-GCTCGT----TATTGATTTTTCACCCGGTGCAAATCGGT--------ACA----TCTCCTCCGCATTACGGCAGTCTTCAACCCGACGGACACTTG-GCTTGGTCGT-TGTCCGGGTTCAAAAAGTACGGAAG---------GAA-AACAC-TTGCA------ATGCATATAGACATTA---TTT------CACA------ATTTTCTG-CA-ACACATTTTTCT---------CTCTG---------TTTTTTCCAGGAAAATTGCGTCCTGTGGATT--TGTCATCAGTT-TTGCTAGCCAA-AAGCAAAGCSizeHit CountTotal NormTotal
No Reads
droAna3
TC--GC-G---GACTGTGCCGGTGACTGTGCGCGTTC--------TGTTCGTTTCCCGTCTGGGGCTCGTCGTATATTGATTTTTCGGCCGGTGCAGGGCAACCAAAAACCG--GAGATATAC--CGGAGACTGGTAGTCTTCAGC-CGACTTT------------CTCAT-TGTCCGGGTCTA--GAGTACGGGCTCAGCATTAAGAAAATCAATT-----------------CT------GTGG-GT------GTAATTTTCATTTTTTTT--------------CTT-----------TGAAACCCTTTCACATTGCAGGTG-ATTGCGTCTAGTGGACT--TGTGA--GGTTTTTGATAGAAAATCAGC-TCGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................AGGTG-ATTGCGTCTAGTGGA.....................................2012.002000002
...............................................................................................................................................................................................................................................................................................................................CAGGTG-ATTGCGTCTAGTGGACT--.................................2312.002200000
................................................................................................................................................................................................................................................................................................................................AGGTG-ATTGCGTCTAGTGGACT--.................................2212.002000002
................................................................................................................................................................................................................................................................................................................................................GTGGACT--TGTGA--GGTTTTTGATAG..............2411.001000001
....................................................................................................................................................................................................................................................................................................................................G-ATTGCGTCTAGTGGACT--.................................1811.001100000
............................................................................................................................................................................................................................................................................................................................................TCTAGTGGACT--TGTGA--GGTTTTT...................2311.001000010
.................................................................................................................................................................................................................................................................................................................................GGTG-ATTGCGTCTAGTGGACT--.................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................TCTAGTGGACT--TGTGA--GGT.......................1911.001000010
.........................................................................................................................................................................................................................................................................................................................................................TGTGA--GGTTTTTGATAGA.............1811.001000001
........................................................................................................................................................................................................................................................................................................................................TGCGTCTAGTGGACT--TGTGA--GG........................2211.001000001
........................................................................................................................................................................................................................................................................................................................................TGCGTCTAGTGGACT--TGTG.............................1911.001000010
.................................................................................................................................................................................................................................................................................................................................GGTG-ATTGCGTCTAGTGGACT--TGTG.............................2511.001000001
...........................................................................................................................................................................................................................................................................................................................................GTCTAGTGGACT--TGTGA--GGTTTT....................2311.001000001
...................................................................................................................................................................................................................................................................................................................................................GACT--TGTGA--GGTTTTTGATAGAAAAT.........2611.001000001
....................................................................................................................................................................................................................................................................................................................................G-ATTGCGTCTAGTGGACT--T................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................TAGTGGACT--TGTGA--GGTTT.....................1911.001000001
..........................................................................................................................................................................................................................................................................................................................................CGTCTAGTGGACT--TGTGA--GGT.......................2111.001100000
..................................................................................................................................................................................................................................................................................................................................GTG-ATTGCGTCTAGTGGACT--TGTGA--..........................2511.001000001
.................................................................................................................................................................................................................................................................................................................................GGTG-ATTGCGTCTAGTGGA.....................................1911.001100000
droBip1
TC--GC-G---AACTGT-----------G-CGC--------GTTCTGTTCGTTTCCCGTCTGGGGCTCGTCGTATATTGATTTTTCGGCCGGTGCAGGGCAACCAAAAACCG--GAGATATAC--C----ACTGGTAGTCTTCAGT-CGACTTT------------CTCAT-TGTCCGGGTCTA--GATTACGGGCTCCAAATTAGGAAAATCAATT-----------------CT------GTGG-GT------GTAATTCTGATT---------------TTTTCACC----------------------ATCATTGCAGGTG-ATTGCGTCTAGTGGACT--TGTGA--GGTTTTTGATAGACAACCAGC--TCGSizeHit CountTotal NormTotal
No Reads
dp5
AGCTGC-GGCT------GCCACACACTCGGCTCCAACTCGGGT----TCTGTTT-CTGTCTGGGGCTCGT----TATTGATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AGCTGC-GGCT------GCCACACACTCGGCTCCAACTCGGGT----TCTGTTT-CTGTCTGGGGCTCGT----TATTGATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/19/2015 at 03:41 PM