ID:

dsi_12461

Coordinate:

3l:7741694-7741843 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-21.9	-21.6	-21.6

Flybase annnotation

CDS [3l_7741844_7741861_-]; exon [3l_7741844_7741861_-]; intron [3l_7741862_7742362_-]; intron [3l_7741381_7741843_-]

No Repeatable elements found

mature

star

Sense Strand Reads

--------------------------------##################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AACTATATTTGCATTGTATTGATCCTTTGAAGCTAACGACAACTATTTTGGTAAGTTCAAAGTGCGCTGCAAACATCCACATATCTATCCATAATGTAGCTCCCAGTAGAATTAATTCATTACCCTCTCTTACTCTCGTAAGTAGATATTCCCCGAAATCGCTGAACATTTGAAAAAATGTATCTTTACTTTATTTTGGGTGCTTGGATGGACTTGAAACATCCTCCTTCGTTTGGATTTTGCCATATCA ************************************************...(((((....((.((((((.......................))))))...))...)))))............((((((((....))))).))).....((((((((....((((((((....)))))).))........))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
....................................................................................................................................................................................................TGCGTACTTGGATGGACTTGAG................................	22	3	2	0.50	1	1	0	0	0
..................................................................................................................................................................TGAACATTTGAAAAAA........................................................................	16	0	2	0.50	1	0	1	0	0
....................................................................................................................................................................................................TTGGTGCTTGGATGAACTCGA.................................	21	3	4	0.25	1	1	0	0	0
...............................................................................................................................................................CGCTGAACATTTGATA...........................................................................	16	1	6	0.17	1	0	0	1	0
........................................................................................................................................................................................................TGCTTGGATGGATTTG..................................	16	1	10	0.10	1	0	0	0	1
...........................................................................................................................................................................................................TTGCATGGACTTGAAAAA.............................	18	2	11	0.09	1	0	1	0	0
..............................................................................................................................................................TCGCTGAACACTTGATA...........................................................................	17	2	16	0.06	1	0	0	1	0
.........................................................................................................................................GTAAGGAGACATTCCC.................................................................................................	16	2	20	0.05	1	0	0	0	1

Anti-sense strand reads

TTGATATAAACGTAACATAACTAGGAAACTTCGATTGCTGTTGATAAAACCATTCAAGTTTCACGCGACGTTTGTAGGTGTATAGATAGGTATTACATCGAGGGTCATCTTAATTAAGTAATGGGAGAGAATGAGAGCATTCATCTATAAGGGGCTTTAGCGACTTGTAAACTTTTTTACATAGAAATGAAATAAAACCCACGAACCTACCTGAACTTTGTAGGAGGAAGCAAACCTAAAACGGTATAGT ************************************************...(((((....((.((((((.......................))))))...))...)))))............((((((((....))))).))).....((((((((....((((((((....)))))).))........))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
.......................................................................................................................................................CGGCTCTAGCGACTTGTAAAAT.............................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................CGGCTCTAGCGACTTGTAAAATT............................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................TAGATAGAAATGAAATAAA......................................................	19	1	1	1.00	1	0	1	0	0	0	0	0	0
..............................TCGATTGCTGTTGGT.............................................................................................................................................................................................................	15	1	7	0.86	6	1	0	4	1	0	0	0	0
...ATATAAACGTAACATA.......................................................................................................................................................................................................................................	16	0	7	0.14	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................TACCTGAACTTGGTAGCTG........................	19	3	20	0.10	2	0	0	0	0	2	0	0	0
............................................TAAAACAATTCAAGTTT.............................................................................................................................................................................................	17	1	20	0.10	2	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................TTATATGAGGAAGCCAACC..............	19	3	14	0.07	1	0	0	0	0	0	1	0	0
..................................................................................................................................................................ACTTGTATACTTTTTTTCAAA...................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	1
.................................................................................................................TTAATTCAAGGGAGAGAAT......................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0
.........................................................................GGAGGTGTATAGATGCGTA..............................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0	0
................................................................................................................................................CTATAAGGTGATTTAGCGG.......................................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0

Generated: 04/24/2015 at 10:32 AM