ID:

dsi_1245

 Coordinate:

3r:17742808-17742957 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.2 -19.2 -19.1

Flybase annnotation

CDS [3r_17742958_17743070_+]; exon [3r_17742958_17743070_+]; intron [3r_17741889_17742957_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAGTGTCGCTGCGTTGGAATATGAGCAAAACCCGCGGGCCATCGAAAATGTCCTTGAATTGCATTAAAATTTGACTGGGAGTAGTAAAGTCAAGTTTAATAGTAAACTTGGAAATAGTAACACTTTTATATTATCACTTATTATATTTATATACTTATGGTACTTCTGCAACTTTCAATAGTATCTCTTTCCCATCCAGCTCCCAATTTATGACGAAGACAAATCGCTTGGTGATTTTGAGGCATGGCG
**************************************************(((...(((((.......))))))))((((((.((.....(((((((((....)))))))))....((((.......((((.((.....)).))))......))))...((((((..((.......))..)))))).)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
...................................................................................AGTAAAGTCAAGTTT........................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................AATAGTAAACTTGGAAATAGTAACACTTT........................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0
..........TGCGTTGGATTATGA................................................................................................................................................................................................................................. 15 1 7 0.29 2 0 0 0 2 0 0 0
.....GACGCTACGTTGGATTATG.................................................................................................................................................................................................................................. 19 3 4 0.25 1 0 0 0 0 1 0 0
.........ATGGGTTGGAATATGAGC............................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 1 0
....TGACGCTCCGTTGGATTATG.................................................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 1 0 0 0 0
....TGACGCTCCGTTGGATTAT................................................................................................................................................................................................................................... 19 3 12 0.17 2 0 0 2 0 0 0 0
....TGCCGCCGCGTTGGAATATT.................................................................................................................................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................CTTTCGCATCCAGCTCCA............................................. 18 2 20 0.10 2 0 0 0 0 0 0 2
........GGTGCGTTGGAATAT................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 1

Anti-sense strand reads

TTTCACAGCGACGCAACCTTATACTCGTTTTGGGCGCCCGGTAGCTTTTACAGGAACTTAACGTAATTTTAAACTGACCCTCATCATTTCAGTTCAAATTATCATTTGAACCTTTATCATTGTGAAAATATAATAGTGAATAATATAAATATATGAATACCATGAAGACGTTGAAAGTTATCATAGAGAAAGGGTAGGTCGAGGGTTAAATACTGCTTCTGTTTAGCGAACCACTAAAACTCCGTACCGC
**************************************************(((...(((((.......))))))))((((((.((.....(((((((((....)))))))))....((((.......((((.((.....)).))))......))))...((((((..((.......))..)))))).)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M024
male body
...............................................TTACAGGAACTTAAC............................................................................................................................................................................................ 15 0 3 1.33 4 4 0 0 0
..........................................................................................................................................................................TTGAAAGTTGTCATAGAGT............................................................. 19 2 2 0.50 1 0 1 0 0
............................................CTGTTACAGGAACTTAA............................................................................................................................................................................................. 17 1 4 0.25 1 1 0 0 0
...............................................................................................................................................................................................................AAATACTGCCTCTGTTT.......................... 17 1 4 0.25 1 1 0 0 0
.................................................................................................................................................................CTGAAGTCGTTGAAAGTTA...................................................................... 19 2 5 0.20 1 0 0 0 1
.............................................CTTTACAGGAACTTAAC............................................................................................................................................................................................ 17 1 5 0.20 1 0 0 1 0
...............................................................................................................................................................................................................AAATACTGCCTCTGT............................ 15 1 19 0.05 1 0 0 1 0

Generated: 04/24/2015 at 04:54 AM