ID:

dsi_12446

 Coordinate:

x:12900877-12901026 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.2 -37.2 -37.0 -37.0

Flybase annnotation

exon [x_12901027_12901544_+]; five_prime_UTR [x_12901027_12901454_+]; intron [x_12900638_12901026_+]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
(CAG)nSimple_repeatSimple_repeat+
mature
  1. 2l:13084804-13084824 +
  2. 2l:15228466-15228486 +
  3. 2l:19128974-19128994 +
  4. 2r:13079738-13079758 +
  5. 3l:5656663-5656683 +
  6. 3l:15771631-15771651 +
  7. 3r:8905411-8905431 +
  8. 3r:17949325-17949345 +
  9. 3r:23568289-23568309 +
  10. x:1160451-1160471 +
  11. x:5163580-5163600 +
  12. x:5977650-5977670 +
  13. x:7775150-7775170 +
  14. dsi_12446  x:12900917-12900937 +
  15. x:13397761-13397781 +
  16. x:16622958-16622978 +
  17. x:17124665-17124685 +
  18. node_47911:179-199 +
  19. node_26342:60-80 +
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTTTAAATTGTGAAAGGCAGAGAAAGGAAAAGAGTGGCGTCACACGAAAGAAAATTTTCTTTGGCGTCGTCGAGGTGTTTGTGCCTGAGTGTGTGTGTATGTGTGTGTGTGCGAATGTGTTGTCGTTGGTGTGGCATAAGATAAATAATACAATGCAGCGCTCAGTTAGCAACAAATTCTCTCTTCTCTGCAGCAGCAGCAGCAACAACAACAGCAGCAACAGCAACAATCGCAACGCAACGCACAAAA
**************************************************.....((.......((......((((.((((((((((((((((.(((((.(((((((((.(((.((((......)))).)))..))))..........))))))))))))))))))...))).)))))..))))......))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M023
head
 M024
male body
.........................................................................................................................................................................................................AGCAACAACAACAGCAGCAAC............................ 21 0 16 1.00 16 16 0 0 0 0 0 0
.....................................................AATTTTCTTTGGCGTGGAAGA................................................................................................................................................................................ 21 3 3 1.00 3 0 2 1 0 0 0 0
.....................................................................................................................GTGTAGACGTTGGGGTGGCA................................................................................................................. 20 3 18 0.22 4 0 0 0 0 0 2 2
...................................................................................................................ACGTGGTGTCGTTGGTATG.................................................................................................................... 19 3 11 0.09 1 0 1 0 0 0 0 0
.....................AGAAAGGACAAGAGT...................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 1 0 0 0 0
........TGGTGAATGGCAGAGAAA................................................................................................................................................................................................................................ 18 2 15 0.07 1 0 0 0 1 0 0 0
.......................................................................................................ATGGGTGTGCAAATGTGTTG............................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0
..........................................................................................TGTGTGTGTATGTGTGTGTGT........................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0
............................................................................................TGTGTGTATGTGTGTGTGTG.......................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0
.....................................................AAGTTTCTTTGGCGTGG.................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................GCAGAAGCAGCAACAACAACAGC.................................. 23 1 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................AACAACAGCAGCAACAGCA........................ 19 0 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

TCAAATTTAACACTTTCCGTCTCTTTCCTTTTCTCACCGCAGTGTGCTTTCTTTTAAAAGAAACCGCAGCAGCTCCACAAACACGGACTCACACACACATACACACACACACGCTTACACAACAGCAACCACACCGTATTCTATTTATTATGTTACGTCGCGAGTCAATCGTTGTTTAAGAGAGAAGAGACGTCGTCGTCGTCGTTGTTGTTGTCGTCGTTGTCGTTGTTAGCGTTGCGTTGCGTGTTTT
**************************************************.....((.......((......((((.((((((((((((((((.(((((.(((((((((.(((.((((......)))).)))..))))..........))))))))))))))))))...))).)))))..))))......))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................................................................GCGTTGCGTTGCGTGTTT. 18 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................................GTTGTTGTCGTCGTTGTCGT........................ 20 0 20 0.55 11 8 0 0 3 0
..................................................................................AGGGACTCACACAGACATACAC.................................................................................................................................................. 22 2 2 0.50 1 0 0 1 0 0
................................................................................................................................................TTATTATGTCATGTCGCGTGT..................................................................................... 21 3 3 0.33 1 0 0 0 1 0
.................................................................................................................................................................................AGGAGAGAAGAGACGTGGTAG.................................................... 21 3 5 0.20 1 1 0 0 0 0
.........................................................................................................................................................................................................TCGTTGTTGTTGTCGTCGTT............................. 20 0 19 0.16 3 3 0 0 0 0
.....................TCATTCCTTTTCTCA...................................................................................................................................................................................................................... 15 1 13 0.08 1 1 0 0 0 0
.........................................................................................................................................................GACGGCGCGAGTCAATC................................................................................ 17 2 14 0.07 1 0 0 1 0 0
.......................................................................................................................................................................................................CGTCGTTGTTGTTGTCGTCGTT............................. 22 0 14 0.07 1 1 0 0 0 0
............................................................................................................................................................................TGTTTAGGAGAGAACAG............................................................. 17 2 16 0.06 1 1 0 0 0 0
...........................................................................................................................................................................................................GTTGTTGTTGTCGTCGT.............................. 17 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................GTCGTCGTCGTTGTTGTTGT.................................... 20 0 20 0.05 1 0 0 0 0 1
..........................................................................................................................................................................................................CGTTGTTGTTGTCGTCGTT............................. 19 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:12900827-12901076 + dsi_12446 AGTTTAAATTGTGA----AA-----------GGCAGAGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCCTGA-----------------------------G---------------------------------TG--TGTGTG--TATGTGTGTGT--G------------------------------TG------------CGAATGTGTTGTCG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCG--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAGCAACAACAACAG---CA---GCA------ACAGC-----------------------------AACAATC----------------GCAACGC-AACGCACAAAA
droSec2 scaffold_20:204075-204322 + AGTTTAAATTGTGA----AA-----------GGCAGAGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCCTGA-----------------------------G---------------------------------TG--TGTGTG--TATGTG--TGT--G------------------------------TG------------CGAATGTGTTGTAG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCG--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTACAGCA---GCAG---CAGCAACAACAACAG---CA---GCA------ACAGC-----------------------------AACAATC----------------GCAACGC-AACGCACAAAA
dm3 chrX:13563970-13564214 + AGTTTAAATTGTGA----AA-----------GGCAGAGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCCTTA-----------------------------G---------------------------------TG--TGTGTG--TATGTG--TGT--G------------------------------TG------------CGAATGTGTTGTGG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCA--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAA---CAACAACGG---CA---GCA------ACACC-----------------------------AACAATC----------------GCAACGC-AACGCACAAAA
droEre2 scaffold_4690:13318986-13319272 - GATTTAAATTGTGA----AC-----------GGCAGAGAAAGA-----------------------------------------A----AACGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCATGT-----------------------------G---------------------------------------TGTG--TGTGTG--TGT--G--CGCTGGTGCTCCCT------------TGTG------------CGAATGTGTTGTAG-------------------------------------------------------------------------------------------------------------------ATGGTGTGC--------------CA-----------------TAAGAT---AAATAATACAATGCAGCA--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCAGCAACAG---CAGCAACAA---CAAGAACA---AGA------ACAACA-----ACAGCAGCAGTAGCAGTAGCAGCAACAATC----------------GCAACGC-AACGCACAAAA
droYak3 X:7846916-7847163 + AATTTAAATTGTGA----AC-----------GGCAGAGAAAAG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCATGT-----------------------------G---------------------------------TG--TGCGTGCGTGTGTG--TGT--G--TGCTGGTGCTCCTT------------TGCG------------CGAAAGTGTTGTAG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCA--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAA---CAA---CAG---C-----------------------------------------------------AACAATC----------------GCAACGC-AACGCACAAAA
droEug1 scf7180000408958:22778-23026 - AATTTCAATTTTAA----AA-----------CGA--AGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTCGAGC-----------TATTTGTGTATTT-----------------------------G---------------------------------TGGATGTGTG--TATGTG--TGT--G--AGCTGGTGCTCTCT------------TGTG------------TGATTGTGTT--AG-------------------------------------------------------------------------------------------------------------------TTGGTGTGA--------------AA-----------------TAAAAT---AAATAATACAA-----CAAGT--------------------------------------------------------------------------------------TAAGTTAACCAACAAATTCTGTCTTT------TCTGCAGCA---GCAG---CAGCAACAACAAT-----------------------------------------------------AACAATC----------------GCAACGC-AACGCACAAAA
droBia1 scf7180000302041:574972-575226 + AATGTAAATGTGAAAATGTT-----------GGA------A-G-----------------------------------------A----AGAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGCCGAGG-----------TGTTTGTGTATGT-----------------------------GCGA-----------------GAGTGCT----------GGTGTG--TGTGTG--TGT--G--TGCTGGTGCTCTCT------------CGTG------------TGTTGGTG---------------------------------------------------------------------TGC----------------------------------------------AC-TTGGTGTGC--------------AG-----------------TAAAATAT-AAATAATACAC-----CT--A--------------------------------------------------------------------------------------TAAGTTAG-CAACAAATTCGCTCTTCCTCCTTTCCGCAGCA---GCAG---GAGCAGCAACAAC-----------------------------------------------------AACAA---------------------ACGC-AACGCACAAAA
droTak1 scf7180000414393:19533-19780 - AGTTTAAGCTGCAA----AC-----------GGAAGAAAAAAG----------------------------------------------AGAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTATATGT-----------------------------G---------------------------------CG--AGTGTG--TGTGTG--TGT--G--TGCTGGAGCTCTCT------------CGTG------------TGTTTGTGTT--AG-----------------------------------TCAGTG---------------------------------------------------------------------------TGGTGTGC--------------AG-----------------GAAAAT---TAATAATACAA-----CA--A--------------------------------------------------------------------------------------TGAGTTAG-CAACAAATTCTCCCTTTCGCTTTCCCGCAGCA---GCAG---CAGCAACAAC--------------------------------------------------------AACAGT---------------------CGC-AACGCACAAAA
droEle1 scf7180000491277:68081-68292 + G-CTAAAATTGTAA----AC-----------GTA--------A-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTT-------------------TGTGTGTGT-----------------------------G-----------------------------------------TG--T-TGTG--TGA--G--TGCTTATGCTCTCT------------TGTG------------TGTA---------------------------------------------AT----------------------GGTGTG--------------------------------------------------TTAGTGTGA--------------AA-----------------TAAAAT---AAATAATACAA-----CA--T--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAGCAACA-----------------------------------------------------------ACAATC----------------GCA-----AACGCACAAAA
droRho1 scf7180000779510:51886-52096 + AACTTAAATTGTAA----AC-----------GGA------AAA-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTT-------------------TGTGTATGT-----------------------------G---------------------------------------------TTTGTG--TGT--G--TGCAAGTGCTCTTT------------TGTG------------TGTG---------------------------------------------AT----------------------GATGTG--------------------------------------------------TTAGTGTGT--------------AA-----------------TAAAAT---AAATAATACAA-----CC--T--------------------------------------------------------------------------------------TAAGTTAG-CAACAAATTCTCTTTTC------TCTGCAGCA---GCAG---CAA---CAA-----------------------------------------------------------CAAG---------------------CGCAAACGCACAAAA
droFic1 scf7180000454073:1453638-1453841 + ---TTAAGTTATAA----AC-----------GGCA-----AGA-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTCGAGC-----------TGACTGTGTA--------------------------------------------------------------------------------TGTG--TGT--G--AGCTGGTGCTCTCT------------TGAG------------TGACTGTGT---------------------------------------------------------------------------------------------------------------------------GTGTGT--------------AA-----------------TAAAAT---AAATAATAAAA-----CA--T--------------------------------------------------------------------------------------TTAGTAAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAA---CA-----------------------------------------------------------ACAAT---------------------CGC-AACGCACAAAA
droKik1 scf7180000302517:245777-246055 + AATCCAAA--GTGA----AC-----------GGA------ATA-----------------------------------------G----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTT-------------------TGTGTATGT-----------------------------GTGATAGTGTATGCTCTCTCAGCTTGTGATTT--------------TATATA--TGT--A------------------------------TG------------CACATATAT---------------------------------GTATTAT-----A---TGTG---------------C------------------------------------------------ACGCGTGTGTGGCAGTGT----TCA-GA-----------------TAAAATAA-AAATAATAC------------TCGTGGCGAGT--ACAA--------------------------------------------------------CAAATACAACGGCGGAGTTAG-CAACAA-TTTTGTTTTG------TTTTCAACA---GCAC---CAG---------CAGCAGTA---GCA------ACAAT-----------------------------AACA---------------------------AACGCACAAAA
droAna3 scaffold_13334:486063-486424 + ATTTTT----TTAA----ATAAAAC------GTA--------A--------------------AAGAAGACGCTTGAAAAAAAGAATAAAGTAGCTGGCGTCACACGCCAAAAAGAAAAGAAAATTTTCT-TGGCGTCGTTAAGC-----------TGTCTGTATATTT---------------------TTGTATGTGTTT-------------------------------------------------------------GAGTGCTCTCTGGCTCT-TTCTGGGTGTGTGTGTGTGAGTGACTGTGA---------------------------------GTGT-GA-----G---TGTG---------------T------------------------------------------------GCGTTTATGTGGCTGAGC------AAAC-----------------TAATAA---AAATAAT---------------CG------------------------------AGCAACAACAACAACAAGAAGAAGAAGGACGAAGAGTAAACATGTACACAGGATAAAGTAG-CAACAATTTCTCATGTT------TCAGCAACA---GCAA---CAA---CAA---C-----------------------------------------------------AACAATCAGAACAAGATAGAACTTGAACGA-AACGCACAAAA
droBip1 scf7180000396431:1067252-1067614 - AGTTCTTTTTGAAA----AA--AATATATAAGCCTGGGAAAGA----------------------------------------AAACAGAGTGGCTGGCGTCACAGG--------AAAAGAAAATTTTCT-TGGCGTCGTTAAGC-----------TGTCTGTATATTT---------------------TTGTATGTGTTC-------------------------------------------------------------GAGTGCTCTCTGGCTGTTTTCTGGGTGTGTGTGTGTGTG----TATGA-----------------GTGTTTGTTTGGCTGTGTGT-GT-----G---TGTG---------------T------------------------------------------------GCGTTTATGTGGCTGAGC------AAAC-----------------TAATAA---AAATAAT---------------CG------------------------------AGCAACAACAACA------------AGGAGCAAGAGTAAACATGTACACAGGATAAAGTAG-CAACAATTTCTCATGTT------TCAGCAGCA---ACAG---CAA---CAGCAGAAG---CA---ACAACACGAACAGA-----------------------------AAC---------AAGATATAACTTGAACGC-AACGCACAAAA
dp5 3:16977276-16977506 - AA---AAACAGTGA----AA-----------TGAAAT------------------------------------------------------GAAATGAAATGAAATG--------AAAGGAAAACC------GACTCCGCCGAGATCTTGTTGCACAACAGATGTGGAT-----------------------------GT---------------CTGAAACTGGAATTG--------TA------------------------------------------------AA------------TGTATGTATG--GA-----------------------------------ATGGTATGGTATATAC-------------------------------------------------------TCGAACACTCGA-----------------------------------------------------ATATACCACAGAG--A--------------------------------------------------------------------------------------GCAGGCAG-AATCAGATTCAAACTC--------CAGCAGCA---GCAG---CAGCAATAACAACAG---CA---ACA------ACGGC-----------------------------AACAAC------------------------------AACAAC
droPer2 scaffold_56:149230-149576 + GATTGAAATAATTA----AA-----------TCTAGAGACTGGGAACATATGTACATATGTGTATGTGCACACATATGTATATGAATAATACAAGTGGCGTCACACG--------AAGAGAAAATTTTC-TTGGCGTCGTTAAGC-----------TACATACATATGTACATACAGATGTACATAGAATGTATTTGCGTTT--GGGTATGC---CTAAGGTT--------------GTGTG--------------------------------------------CATA--------TGTA----TATAAT--AGCCAATAAACAGTATATATATTTGT----ATGT-AT-----G---TATG---------------T------------------------------------------------ACATATGTATGTATGGACATAAGTA-GATACATTTGTATCATTCAC----------A--GAATA----------------------------------------------------------------------------------------------------------------------------------CCAGACCA---GAAA---AAA---CCA---GAAAAATA---GTA---------AA-----------------------------GTAAAAC----------------AAAACGC-AGAGCACAAAA
droWil2 scf2_1100000004768:1805212-1805427 - T---TAAATTTCAA----AA-----------ATAAGAAAAAAA-----------------------------------------A----AAAGAGAAGCACAACACA--------ACATGCAAAAGT--GTTGATGTTGCTGTTG-----------CTCTTGTGTGTGT-----------------------------G-----------------------------------------------TGTG--TGT--G--TGGTGGT---GTGT------------GGCA------------TGTCGATA---------------------------------------------------------------------TGTT---------------------------------------GCAGCCACCCGAAAGTGGCT------------AA-----------------TAAAGC---AAATCTT--------------------------------------------GTTGAC---------A------------ATGC------------------------TCAA------------------------------GGCGACG---GCAA---CAACAGCAGCAACAG---CA---GCA------GCAGC-----------------------------AACATTT----------------GC-----------------
droVir3 scaffold_12823:2283662-2283908 + AA-----------A----AA-----------AATAGAAAAAG-----------------------------------------------AAAAACCGATTTCAAAAA--------AA-CGAAA-------TTAAAATCGCACAAG-----------TTTTTGTGCCTTT-----------------------------T---------------------------------TG--TGTGTG--TGTGTG--TGTGTGTGTGTGTGTGATCTGT------------TCGT------------TT----------GG-----------------------------------CT----------------------GGTGG-CACCACGAACAG-----------------------TTTTTCTTTCACTTTCGA-----------------------------------------------------GAATG---CCACA--C----------------------------------------------------------------GCGA------------------GTG----------------------A------TCAGCAGCA---GCAG---CAGCAACAACAACAA---CA---ACT------ACAACATCTTAACAGCAGCAGGCGC------------------------ATA-----TTATTGC-AACGCTCAA--
droMoj3 scaffold_6359:3061993-3062251 - G--------------------------------------------------------------------------------------------AATGGTGCCACAAG--------AAAGG---------------GTATGCGAGC-----------TGCATGTGTGTGT-----------------------------ATG---------------T--GTGTGCG------------------TGTGTG--TG----------------------------------TG------------TGTGTGTGTG--TG-----------------------------------TGTGTGTGGAGTATGCGTTGACCGCAAAG-CGAC------AACTTCCTTCTAACCCAATTTGCGACTTTTCTA-AAC-----------------T----TTA-TG-----------------CAAAATACTAAACAATAT------------CCGCAACGCGTTGTCAACAAATGACATGAAATTGGC------------------------------------------------------------------------------------AACAGCA---ACAA---CAGCAGCAACAACAGCAGCAGCAGCA------ACAAC-----------------------------AGCAGC---------------------AGC-AAC--------
droGri2 scaffold_14820:83755-83948 - AA-----------------A-----------AGCAAGAAAATT-----------------------------------------A----CAACAGCGACAGCAAACA--------GAAAAA-------------CGCAGCAAGTG-----------TATTTGTGTGT------------------------------------------------CTGAGTTTGCGACTGTGTG--TGTGTG--TGTGTG--TGT--G------------------------------TG------------GGTATGTGTGTGTG-------------------------------------------------------------------------------------------------------------------CTGCTCTTA--------------CA------------------AAGCC---AAA--GCATAA-----CT--T--------------------------------------------------------------------------------------ACAA-------------------------------GCAGCA---GCAGCAGCAGCCACAA---CAACAACA---GCA------ACAAC------------------------------------------------------------AACAAGCAACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTTTAAATTGTGA----AA-----------GGCAGAGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCCTGA-----------------------------G---------------------------------TG--TGTGTG--TATGTGTGTGT--G------------------------------TG------------CGAATGTGTTGTCG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCG--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAGCAACAACAACAG---CA---GCA------ACAGC-----------------------------AACAATC----------------GCAACGC-AACGCACAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAG---CA---GCA------AC..........................................................................21161.0016000016000000000000
........................................................................................................................................................................................................................................TG--TGTGTG--TATGTGTGTGT--G------------------------------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
............................................................................................................................................................................................................................................TGTGTG--TATGTGTGTGT--G------------------------------TG------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG---CA---GCA------ACAGC-----------------------------A.........................................19200.05100000000000100000
droSec2
AGTTTAAATTGTGA----AA-----------GGCAGAGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCCTGA-----------------------------G---------------------------------TG--TGTGTG--TATGTG--TGT--G------------------------------TG------------CGAATGTGTTGTAG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCG--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTACAGCA---GCAG---CAGCAACAACAACAG---CA---GCA------ACAGC-----------------------------AACAATC----------------GCAACGC-AACGCACAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCTTC------TCTACAGCA---GCA................................................................................................................2211.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG---CA---GCA------ACAGC-----------------------------..........................................19200.0510010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GCAG---CAGCAACAACAAC...............................................................................................19200.0510010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG---CA---GCA------ACAGC-----------------------------A.........................................20200.0510010
dm3
AGTTTAAATTGTGA----AA-----------GGCAGAGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCCTTA-----------------------------G---------------------------------TG--TGTGTG--TATGTG--TGT--G------------------------------TG------------CGAATGTGTTGTGG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCA--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAA---CAACAACGG---CA---GCA------ACACC-----------------------------AACAATC----------------GCAACGC-AACGCACAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................AA-----------GGCAGAGAAAGG-----------------------------------------A----AAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAACAACGG---CA---GCA------AC..........................................................................1891.331200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTCTTC------TCTGCAGCA---G..................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------TCTGCAGCA---GCAG---CAA---CAACA.................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TGTG--TATGTG--TGT--G------------------------------TG------------CGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................AAAGAGTGGCGTCACACG--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................TGGCGTCACACG--------AA-AGAAAATTTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................GCCTTA-----------------------------G---------------------------------TG--TGTGTG--TATGTG--TGA--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................TG--TGTGTG--TATGTG--TGT--G------------------------------TG------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000
.......ATTGTGA----AA-----------GGCAGAGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................TG--TATGTG--TGT--G------------------------------TG------------CGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................G--TATGTG--TGT--G------------------------------TG------------CGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TA-----------------------------G---------------------------------TG--TGTGTG--TATGTG--TGT--A------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GCAG---CAA---CAACAACGG---..........................................................................................21110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
........................................................................................................................................................................................................................................TG--TGTGTG--TATGTG--TGT--G------------------------------TG------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................A-----------------------------G---------------------------------TG--TGTGTG--TATGTG--TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TG--TGTGTG--TATGTG--TGT--G------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAACAACGG---CA---GCA------ACA.........................................................................18110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAACAACGG---CA---GCA------AC..........................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAACAACGG---CA---GCA------ACA.........................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TGTG--TATGTG--TGT--G------------------------------TG------------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GCAG---CAA---CAACAACGG---CA---.....................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAA---CAACAACGG---CA---GC...................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GATTTAAATTGTGA----AC-----------GGCAGAGAAAGA-----------------------------------------A----AACGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCATGT-----------------------------G---------------------------------------TGTG--TGTGTG--TGT--G--CGCTGGTGCTCCCT------------TGTG------------CGAATGTGTTGTAG-------------------------------------------------------------------------------------------------------------------ATGGTGTGC--------------CA-----------------TAAGAT---AAATAATACAATGCAGCA--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCAGCAACAG---CAGCAACAA---CAAGAACA---AGA------ACAACA-----ACAGCAGCAGTAGCAGTAGCAGCAACAATC----------------GCAACGC-AACGCACAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------ACAACA-----ACAGCAGCAGT......................................................2011.0010100000
............................................................................................................................................................TGTTTGTGCATGT-----------------------------G---------------------------------------TGTG--TGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-----ACAGCAGCAGTAGCA..................................................1880.1310000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------ACAACA-----ACAGCAGCAGT......................................................18110.0910000010
droYak3
AATTTAAATTGTGA----AC-----------GGCAGAGAAAAG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AA-AGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTGCATGT-----------------------------G---------------------------------TG--TGCGTGCGTGTGTG--TGT--G--TGCTGGTGCTCCTT------------TGCG------------CGAAAGTGTTGTAG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------CA-----------------TAAGAT---AAATAATACAATGCAGCA--C--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAA---CAA---CAG---C-----------------------------------------------------AACAATC----------------GCAACGC-AACGCACAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................AAAGTGTTGTAG-------------------------------------------------------------------------------------------------------------------TTGGTGTGG--------------C.....................................................................................................................................................................................................................................................................................................2211.00100100000000
......................................................................................................................................................................................................G---------------------------------TG--TGCGTGCGTGTGTG--T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCA---GCAA---CAA---CAG---C-----------------------------------------------------A.........................................19200.05101000000000
droEug1
AATTTCAATTTTAA----AA-----------CGA--AGAAAGG-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTCGAGC-----------TATTTGTGTATTT-----------------------------G---------------------------------TGGATGTGTG--TATGTG--TGT--G--AGCTGGTGCTCTCT------------TGTG------------TGATTGTGTT--AG-------------------------------------------------------------------------------------------------------------------TTGGTGTGA--------------AA-----------------TAAAAT---AAATAATACAA-----CAAGT--------------------------------------------------------------------------------------TAAGTTAACCAACAAATTCTGTCTTT------TCTGCAGCA---GCAG---CAGCAACAACAAT-----------------------------------------------------AACAATC----------------GCAACGC-AACGCACAAAASizeHit CountTotal NormTotal
No Reads
droBia1
AATGTAAATGTGAAAATGTT-----------GGA------A-G-----------------------------------------A----AGAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGCCGAGG-----------TGTTTGTGTATGT-----------------------------GCGA-----------------GAGTGCT----------GGTGTG--TGTGTG--TGT--G--TGCTGGTGCTCTCT------------CGTG------------TGTTGGTG---------------------------------------------------------------------TGC----------------------------------------------AC-TTGGTGTGC--------------AG-----------------TAAAATAT-AAATAATACAC-----CT--A--------------------------------------------------------------------------------------TAAGTTAG-CAACAAATTCGCTCTTCCTCCTTTCCGCAGCA---GCAG---GAGCAGCAACAAC-----------------------------------------------------AACAA---------------------ACGC-AACGCACAAAASizeHit CountTotal NormTotal
No Reads
droTak1
AGTTTAAGCTGCAA----AC-----------GGAAGAAAAAAG----------------------------------------------AGAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTCGAGG-----------TGTTTGTATATGT-----------------------------G---------------------------------CG--AGTGTG--TGTGTG--TGT--G--TGCTGGAGCTCTCT------------CGTG------------TGTTTGTGTT--AG-----------------------------------TCAGTG---------------------------------------------------------------------------TGGTGTGC--------------AG-----------------GAAAAT---TAATAATACAA-----CA--A--------------------------------------------------------------------------------------TGAGTTAG-CAACAAATTCTCCCTTTCGCTTTCCCGCAGCA---GCAG---CAGCAACAAC--------------------------------------------------------AACAGT---------------------CGC-AACGCACAAAASizeHit CountTotal NormTotal
No Reads
droEle1
G-CTAAAATTGTAA----AC-----------GTA--------A-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTT-------------------TGTGTGTGT-----------------------------G-----------------------------------------TG--T-TGTG--TGA--G--TGCTTATGCTCTCT------------TGTG------------TGTA---------------------------------------------AT----------------------GGTGTG--------------------------------------------------TTAGTGTGA--------------AA-----------------TAAAAT---AAATAATACAA-----CA--T--------------------------------------------------------------------------------------TCAGTTAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAGCAACA-----------------------------------------------------------ACAATC----------------GCA-----AACGCACAAAASizeHit CountTotal NormTotal
No Reads
droRho1
AACTTAAATTGTAA----AC-----------GGA------AAA-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTT-------------------TGTGTATGT-----------------------------G---------------------------------------------TTTGTG--TGT--G--TGCAAGTGCTCTTT------------TGTG------------TGTG---------------------------------------------AT----------------------GATGTG--------------------------------------------------TTAGTGTGT--------------AA-----------------TAAAAT---AAATAATACAA-----CC--T--------------------------------------------------------------------------------------TAAGTTAG-CAACAAATTCTCTTTTC------TCTGCAGCA---GCAG---CAA---CAA-----------------------------------------------------------CAAG---------------------CGCAAACGCACAAAASizeHit CountTotal NormTotal
No Reads
droFic1
---TTAAGTTATAA----AC-----------GGCA-----AGA-----------------------------------------A----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTCGAGC-----------TGACTGTGTA--------------------------------------------------------------------------------TGTG--TGT--G--AGCTGGTGCTCTCT------------TGAG------------TGACTGTGT---------------------------------------------------------------------------------------------------------------------------GTGTGT--------------AA-----------------TAAAAT---AAATAATAAAA-----CA--T--------------------------------------------------------------------------------------TTAGTAAG-CAACAAATTCTCTCTTC------TCTGCAGCA---GCAG---CAA---CA-----------------------------------------------------------ACAAT---------------------CGC-AACGCACAAAASizeHit CountTotal NormTotal
No Reads
droKik1
AATCCAAA--GTGA----AC-----------GGA------ATA-----------------------------------------G----AAAGAGTGGCGTCACACG--------AAAAGAAAATTTTCTTTGGCGTCGTT-------------------TGTGTATGT-----------------------------GTGATAGTGTATGCTCTCTCAGCTTGTGATTT--------------TATATA--TGT--A------------------------------TG------------CACATATAT---------------------------------GTATTAT-----A---TGTG---------------C------------------------------------------------ACGCGTGTGTGGCAGTGT----TCA-GA-----------------TAAAATAA-AAATAATAC------------TCGTGGCGAGT--ACAA--------------------------------------------------------CAAATACAACGGCGGAGTTAG-CAACAA-TTTTGTTTTG------TTTTCAACA---GCAC---CAG---------CAGCAGTA---GCA------ACAAT-----------------------------AACA---------------------------AACGCACAAAASizeHit CountTotal NormTotal
No Reads
droAna3
ATTTTT----TTAA----ATAAAAC------GTA--------A--------------------AAGAAGACGCTTGAAAAAAAGAATAAAGTAGCTGGCGTCACACGCCAAAAAGAAAAGAAAATTTTCT-TGGCGTCGTTAAGC-----------TGTCTGTATATTT---------------------TTGTATGTGTTT-------------------------------------------------------------GAGTGCTCTCTGGCTCT-TTCTGGGTGTGTGTGTGTGAGTGACTGTGA---------------------------------GTGT-GA-----G---TGTG---------------T------------------------------------------------GCGTTTATGTGGCTGAGC------AAAC-----------------TAATAA---AAATAAT---------------CG------------------------------AGCAACAACAACAACAAGAAGAAGAAGGACGAAGAGTAAACATGTACACAGGATAAAGTAG-CAACAATTTCTCATGTT------TCAGCAACA---GCAA---CAA---CAA---C-----------------------------------------------------AACAATCAGAACAAGATAGAACTTGAACGA-AACGCACAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAGAAGAAGAAG.........................................................................................................................................................................................1980.131000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAACAAG..................................................................................................................................................................................................18160.061010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---GCAA---CAA---CAA---C-----------------------------------------------------AAC.......................................20200.051100000
droBip1
AGTTCTTTTTGAAA----AA--AATATATAAGCCTGGGAAAGA----------------------------------------AAACAGAGTGGCTGGCGTCACAGG--------AAAAGAAAATTTTCT-TGGCGTCGTTAAGC-----------TGTCTGTATATTT---------------------TTGTATGTGTTC-------------------------------------------------------------GAGTGCTCTCTGGCTGTTTTCTGGGTGTGTGTGTGTGTG----TATGA-----------------GTGTTTGTTTGGCTGTGTGT-GT-----G---TGTG---------------T------------------------------------------------GCGTTTATGTGGCTGAGC------AAAC-----------------TAATAA---AAATAAT---------------CG------------------------------AGCAACAACAACA------------AGGAGCAAGAGTAAACATGTACACAGGATAAAGTAG-CAACAATTTCTCATGTT------TCAGCAGCA---ACAG---CAA---CAGCAGAAG---CA---ACAACACGAACAGA-----------------------------AAC---------AAGATATAACTTGAACGC-AACGCACAAAASizeHit CountTotal NormTotal
No Reads
dp5
AA---AAACAGTGA----AA-----------TGAAAT------------------------------------------------------GAAATGAAATGAAATG--------AAAGGAAAACC------GACTCCGCCGAGATCTTGTTGCACAACAGATGTGGAT-----------------------------GT---------------CTGAAACTGGAATTG--------TA------------------------------------------------AA------------TGTATGTATG--GA-----------------------------------ATGGTATGGTATATAC-------------------------------------------------------TCGAACACTCGA-----------------------------------------------------ATATACCACAGAG--A--------------------------------------------------------------------------------------GCAGGCAG-AATCAGATTCAAACTC--------CAGCAGCA---GCAG---CAGCAATAACAACAG---CA---ACA------ACGGC-----------------------------AACAAC------------------------------AACAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GATTGAAATAATTA----AA-----------TCTAGAGACTGGGAACATATGTACATATGTGTATGTGCACACATATGTATATGAATAATACAAGTGGCGTCACACG--------AAGAGAAAATTTTC-TTGGCGTCGTTAAGC-----------TACATACATATGTACATACAGATGTACATAGAATGTATTTGCGTTT--GGGTATGC---CTAAGGTT--------------GTGTG--------------------------------------------CATA--------TGTA----TATAAT--AGCCAATAAACAGTATATATATTTGT----ATGT-AT-----G---TATG---------------T------------------------------------------------ACATATGTATGTATGGACATAAGTA-GATACATTTGTATCATTCAC----------A--GAATA----------------------------------------------------------------------------------------------------------------------------------CCAGACCA---GAAA---AAA---CCA---GAAAAATA---GTA---------AA-----------------------------GTAAAAC----------------AAAACGC-AGAGCACAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................ATACAGATGTACATAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
................................CTAGAGACTGGGAACATATGTACATATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droWil2
T---TAAATTTCAA----AA-----------ATAAGAAAAAAA-----------------------------------------A----AAAGAGAAGCACAACACA--------ACATGCAAAAGT--GTTGATGTTGCTGTTG-----------CTCTTGTGTGTGT-----------------------------G-----------------------------------------------TGTG--TGT--G--TGGTGGT---GTGT------------GGCA------------TGTCGATA---------------------------------------------------------------------TGTT---------------------------------------GCAGCCACCCGAAAGTGGCT------------AA-----------------TAAAGC---AAATCTT--------------------------------------------GTTGAC---------A------------ATGC------------------------TCAA------------------------------GGCGACG---GCAA---CAACAGCAGCAACAG---CA---GCA------GCAGC-----------------------------AACATTT----------------GC-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAG---CA---GCA------GCAGC-----------------------------AACA......................................24200.05100010
droVir3
AA-----------A----AA-----------AATAGAAAAAG-----------------------------------------------AAAAACCGATTTCAAAAA--------AA-CGAAA-------TTAAAATCGCACAAG-----------TTTTTGTGCCTTT-----------------------------T---------------------------------TG--TGTGTG--TGTGTG--TGTGTGTGTGTGTGTGATCTGT------------TCGT------------TT----------GG-----------------------------------CT----------------------GGTGG-CACCACGAACAG-----------------------TTTTTCTTTCACTTTCGA-----------------------------------------------------GAATG---CCACA--C----------------------------------------------------------------GCGA------------------GTG----------------------A------TCAGCAGCA---GCAG---CAGCAACAACAACAA---CA---ACT------ACAACATCTTAACAGCAGCAGGCGC------------------------ATA-----TTATTGC-AACGCTCAA--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAG---CAGCAACAACAACAA---C.........................................................................................21200.102000000000000000001000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GT------------TT----------GG-----------------------------------CT----------------------GGTGG-CACAT..........................................................................................................................................................................................................................................................................................................................................................................18140.071001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TCAGCAGCA---GCAG---CAGCAACAACA.................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GCAG---CAGCAACAACAACAA---C.........................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................GTGTG--TGTGTGTGTGTGTGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
G--------------------------------------------------------------------------------------------AATGGTGCCACAAG--------AAAGG---------------GTATGCGAGC-----------TGCATGTGTGTGT-----------------------------ATG---------------T--GTGTGCG------------------TGTGTG--TG----------------------------------TG------------TGTGTGTGTG--TG-----------------------------------TGTGTGTGGAGTATGCGTTGACCGCAAAG-CGAC------AACTTCCTTCTAACCCAATTTGCGACTTTTCTA-AAC-----------------T----TTA-TG-----------------CAAAATACTAAACAATAT------------CCGCAACGCGTTGTCAACAAATGACATGAAATTGGC------------------------------------------------------------------------------------AACAGCA---ACAA---CAGCAGCAACAACAGCAGCAGCAGCA------ACAAC-----------------------------AGCAGC---------------------AGC-AAC--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------ACAAC-----------------------------AGCAGC---------------------AGC-A..........19200.204400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCA------ACAAC-----------------------------AGCA......................................28200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAGCA------............................................................................22200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCA------ACAAC-----------------------------AGCAGC---------------------...............27200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCAGCAGCA------ACA.........................................................................28200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAGCAGCAACAACAGCAGCAGCAGC...................................................................................26200.051000010
droGri2
AA-----------------A-----------AGCAAGAAAATT-----------------------------------------A----CAACAGCGACAGCAAACA--------GAAAAA-------------CGCAGCAAGTG-----------TATTTGTGTGT------------------------------------------------CTGAGTTTGCGACTGTGTG--TGTGTG--TGTGTG--TGT--G------------------------------TG------------GGTATGTGTGTGTG-------------------------------------------------------------------------------------------------------------------CTGCTCTTA--------------CA------------------AAGCC---AAA--GCATAA-----CT--T--------------------------------------------------------------------------------------ACAA-------------------------------GCAGCA---GCAGCAGCAGCCACAA---CAACAACA---GCA------ACAAC------------------------------------------------------------AACAAGCAACGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GCAGCAGCAGCCACAA---CA..............................................................................................21200.05110

Generated: 05/19/2015 at 05:39 AM