ID:

dsi_12426

 Coordinate:

3r:4214158-4214219 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.7 -5.6 -5.4

Flybase annnotation

intron [3r_4214268_4214323_+]; CDS [3r_4214220_4214267_+]; exon [3r_4214220_4214267_+]; exon [3r_4214037_4214157_+]; CDS [3r_4214037_4214157_+]; intron [3r_4214158_4214219_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------################################################--
CCGATGACACATATACAGAAAGCTATATCAGCACAATCGGAGTGGATTTCGTAAGCCAGCCGGAAATTTGTGAAAACTCTTTATGTCTGACTCATAAACCTTTATCTTGCAGAAAATCAGGACCATAGAACTCGACGGAAAGACCATTAAACTGCAAATCGT
**************************************************(((((......((...(((((((..................))))))))).....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 GSM343915
embryo
 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................CAAAATCAGGACCATAGAACT.............................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAGAACTCGACGGAAAGACCATTA............. 24 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CATAGAACTCGACGGAAA..................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATAGAACTCGACGGAAAGACC................. 21 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
....................AGCTATATCAGCACAATCGGAGTGGA.................................................................................................................... 26 0 1 3.00 3 0 0 0 2 0 1 0 0 0 0 0 0 0
..................................................................................................................................CTAGACGGAAAGACC................. 15 1 4 2.50 10 0 0 0 0 0 6 1 0 0 0 0 0 3
....................................................................................................................TCAGGACCATAGAACTCGACGGAA...................... 24 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ATAGAACTCGACGGAAAGA................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................AGCACAATCGGAGTGGAT................................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CAGGACCATAGAACTCGACGGAAA..................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACCATAGAACTCGACGGAAAGACCATT.............. 27 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
..........................ATCAGCACAATCGGAGTG...................................................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................CTCGACGGAAAGACCATTAAACTG........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATAGAACTCGACGGAAAGACCAT............... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TCAGGACCATAGAACTCGACGGAAAGACC................. 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............ACACAGAAAGTTATATCAGCACAATCGGAGTG...................................................................................................................... 32 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACTCGACGGAAAGACCATTAAACTGC....... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................TTCAAAATCAGGACCATAGAACTCGA........................... 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................CCATAGAACTCGACGGAAA..................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GAAAGACCATTAAACTGCA...... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................ACCATAGAACTCGACGGAAA..................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................TCAGGACCATAGAACTCGACGGAAAGACCA................ 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................ATCAGGACCATAGAACTCGACG......................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................CAGCACAATCGGAGTGGATT.................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................TCAGGACCATAGAACTCGACGGAAA..................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................ATATCAGCACAATCGGAGTG...................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................TATATCAGCACAATCGGAGTGGATT.................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................GACCATAGAACTCGACGGAA...................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................CAAAATCAGGACCATAGAACTCGA........................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTATGTCTGACTCATAAACCT............................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAGAACTCGACGGAAAGACCATTAAA........... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................TATCAGCACAATCGGAGTGGATTTC................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACCATAGAACTCGACGGAAAGACCAT............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GCCGGAAATTTGTGAAAACTCT.................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................TCAGGACCATAGAACTCGACGGAAAGAC.................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TCATAAACCTTTATCTTGCAG.................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................AATCAGGACCATAGAACT.............................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GACCATAGAACTCGACGGAAAGACCAT............... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACCATAGAACTCGACGGAAAGACCATTA............. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTCAAAATCAGGACCATAGAACTC............................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAGAACTCGACGGAAAGACCATTAAAC.......... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGGACCATAGAACTCGACGGAAA..................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAATCAGGACCATAGAACTC............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CGACGGTATGACCCTTAAACTGC....... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................AAAGACCAATAAACTCCCAATC.. 22 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GACCATAGAACTCGACGGAAA..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........TATACAGAAAGCTATATCAGCACAATCGGAG........................................................................................................................ 31 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GACCATTAAACTGCAAATCT. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................CATAGAACTCGACGGAAAGACCATT.............. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATCAGGACCATAGAACTCGACGGAAAA.................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCATGGAGCTTGACGGAAAGA................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................ATCGGAGTGGATTTCAAAATC.......................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CTAGACGGAAAGACCC................ 16 2 18 0.28 5 0 0 0 1 0 1 1 0 0 0 0 0 2
.......................................................................................................................................CGGAAGGATCATTAAAC.......... 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................AACACAATAGGAGTGGA.................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................AATTTGTGGAAACTC................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................ATTGGACGGAAAGACC................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGCTACTGTGTATATGTCTTTCGATATAGTCGTGTTAGCCTCACCTAAAGCATTCGGTCGGCCTTTAAACACTTTTGAGAAATACAGACTGAGTATTTGGAAATAGAACGTCTTTTAGTCCTGGTATCTTGAGCTGCCTTTCTGGTAATTTGACGTTTAGCA
**************************************************(((((......((...(((((((..................))))))))).....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..............................CGTGTTAGTCTCATCTAAAGGAT............................................................................................................. 23 3 1 2.00 2 1 1 0
.........................................CACCTAAAGCATTCGGTCGGCCTTT................................................................................................ 25 0 1 1.00 1 1 0 0
.................................................................TAAGCACTTTTGAGAAA................................................................................ 17 1 12 0.08 1 0 0 1
....................TCGATAAAGCCGTGTTA............................................................................................................................. 17 2 18 0.06 1 0 0 1

Generated: 04/23/2015 at 11:20 PM