ID:

dsi_12417

 Coordinate:

2r:5411698-5411769 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.3 -16.3 -16.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
HOBODNAhAT-hobo+
mature
  1. 2l:3005287-3005301 -
  2. 2l:12607412-12607426 -
  3. dsi_12417  2r:5411726-5411740 -
  4. 2r:7499588-7499602 -
  5. dsi_31443  2r:7630727-7630741 -
  6. 2r:10283265-10283279 -
  7. 2r:11314650-11314664 -
  8. 3l:7288395-7288409 -
  9. 3l:13542145-13542159 -
  10. 3l:18277439-18277453 -
  11. 3r:6700496-6700510 -
  12. 3r:12714390-12714404 -
  13. 3r:13991494-13991508 -
  14. 3r:21048650-21048664 -
  15. x:8982231-8982245 -
  16. x:11813967-11813981 -
  17. x:13435465-13435479 -
  18. x:13663983-13663997 -
  19. x:14493208-14493222 -
  20. node_96699:631-645 -
star

Sense Strand Reads

CCGTAGTTGGTCCCGTAGTCGGTCCCGTACTGGATTTTTAGTGGGTGTTTGTAAGTACCCGCGATGTGAGCATCCAAAATTGTTGGGTGTGAGTGGAGTGGCAAAAAATGACACCCTTGCAGTTCTCTGGTCGACACATTGGCTGGCAACCTGTATGTCTTTGTATACAAAG
**************************************************((((((((((((.......((((((((.....))))))))..)))).)))...............)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
............................ACTGGATTTTTAGTGGGTGTTT.......................................................................................................................... 22 0 1 5.00 5 5 0 0 0 0 0 0 0 0
..............................TGGATTTTTAGTGGGTGTTT.......................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.............................CTGGATTTTTAGTGGGTGTTT.......................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
............................ACTGGATTTTTAGTGGGTGTT........................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..........................GTACTGGATTTTTAGTGGGTG............................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................TGGATTTTTAGTGGGTGTT........................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................CTGGATTTTTAGTGGGTGTT........................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................CTGGATTTTTAGTGGGTGTTTT......................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................GTCGACACATTGGCTGGCAAA...................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................GTGGAGTGGCTAAAAATGACA........................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................ACTGGATTTTTAGTGGGTGT............................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................TGGTCGACACATTGGCTGGCATT...................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................TCTGGTCGACACATTGGCTGG.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................ACACATTGGCTGGCAACCTGT.................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................ACTGGATTTTTAGTGGGTG............................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................ACTGGATTTTTAGTGGGTGTTTT......................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................AATTGTTGGGTATGAGTGGTTT......................................................................... 22 3 3 0.67 2 2 0 0 0 0 0 0 0 0
..................................................................TGGGCATCTAAAATTGTTG....................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................GTGTTTGTAAGTACCCGCGATGTGA....................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................................TGGGTGTTTGTAAGTACCCGCGATGTGA....................................................................................................... 28 0 2 0.50 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................TGCAGTTCTCTGGTCGTCAGTTT................................ 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................GACGGCAACCTGTATGTC............. 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0
..........................................................................................................AATGACACCCTTGCAGTTCTC............................................. 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.........................................TGGGTGTTTGTAAGTACCCGCGATG.......................................................................................................... 25 0 6 0.17 1 0 0 0 1 0 0 0 0 0
...............................................TTTGTAAGTACCCGCGA............................................................................................................ 17 0 20 0.15 3 0 0 0 3 0 0 0 0 0
...........................................GGTGTTTGTAAGTACTCGCGATGT......................................................................................................... 24 1 7 0.14 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................CCTGTATCTCTTTGTA....... 16 1 7 0.14 1 0 0 0 0 0 1 0 0 0
.........................................TGGGTGTTTGTAAGT.................................................................................................................... 15 0 8 0.13 1 0 0 0 0 0 0 1 0 0
.....GTTGATCACTTAGTCGGTCC................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0
.....................................................................GCATCCAAAATCGTTGTG..................................................................................... 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0
............................................GTGTTTGTAAGTACCCGCGATGTG........................................................................................................ 24 0 20 0.10 2 0 0 1 0 0 0 1 0 0
..................................................................................TTGGGTATGAGTGGAGTGGTT..................................................................... 21 3 20 0.10 2 2 0 0 0 0 0 0 0 0
............................................GTGTTTGTAAGTACCCGCGATG.......................................................................................................... 22 0 20 0.10 2 0 0 0 2 0 0 0 0 0
..............................................GTTTGTAAGTACCCGCG............................................................................................................. 17 0 20 0.10 2 0 0 0 2 0 0 0 0 0
............................................GTGTTTGTAAGTACCCGCGA............................................................................................................ 20 0 20 0.10 2 0 0 0 2 0 0 0 0 0
...........................................AGTGTTTGTAAGTACCCGCGATGTG........................................................................................................ 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................TGAGTGCTTGTAAGTACCCGCGATG.......................................................................................................... 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................GTGTTTGTAAGTACCCGCGATGT......................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................GTTTGTAAGTACCCGCGA............................................................................................................ 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................................................................................TTGCAGTTCTCTGGT......................................... 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..............................................TTTTGTAAGTACCCGCGATGTG........................................................................................................ 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................TGTTTGTAAGTACCCGCGATGTG........................................................................................................ 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.............................................TGTTTGTAAGTACCCGCGA............................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.............................................TGTTTGTAAGTACCCGCGATG.......................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0
...............................................................................TTGTTGGGTGTGAGT.............................................................................. 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0
...................................................................................TGGGTATGAGTGGAGTGGCTA.................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TGCAGTTCTCTGGTC........................................ 15 0 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................TTTGTAAGTACCCGCGATGTG........................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GGCATCAACCAGGGCATCAGCCAGGGCATGACCTAAAAATCACCCACAAACATTCATGGGCGCTACACTCGTAGGTTTTAACAACCCACACTCACCTCACCGTTTTTTACTGTGGGAACGTCAAGAGACCAGCTGTGTAACCGACCGTTGGACATACAGAAACATATGTTTC
**************************************************((((((((((((.......((((((((.....))))))))..)))).)))...............)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
.......ACCAGGGCATCAGCCAGGGCATGAC............................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................................TTACTGTGGGAACGTCAAGAG............................................. 21 0 4 1.00 4 4 0 0 0 0 0
.............................................................................................................................AGACCAGCTGTGTAACCGA............................ 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................GGGAACGTCAAGAGACCAGCT...................................... 21 0 2 0.50 1 0 1 0 0 0 0
..................................................................................................................GGAACGTCAAGAGACCAGCT...................................... 20 0 2 0.50 1 0 1 0 0 0 0
................................................................................................................TGGGAACGTCAAGAGACTAGCCGT.................................... 24 2 6 0.33 2 0 0 0 2 0 0
..........................................................................................................TTACTGTGGGAACGTCAAGAGA............................................ 22 0 4 0.25 1 0 1 0 0 0 0
...........................................................................................................TACTGTGGGAACGTCGAGAGA............................................ 21 1 4 0.25 1 0 1 0 0 0 0
................................................AACATTCATGGGCGCT............................................................................................................ 16 0 20 0.05 1 0 0 0 0 1 0
............................................CACAAACATTCATGGGCGC............................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 1
..............................................CAAACATTCATGGGCGCTAC.......................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0

Generated: 04/23/2015 at 01:52 PM