ID:

dsi_12405

 Coordinate:

3r:17237136-17237285 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.4 -3.3 -3.2

Flybase annnotation

five_prime_UTR [3r_17237205_17237620_+]; exon [3r_17237205_17238383_+]

No Repeatable elements found

Sense Strand Reads

-----------------------------------------------------------------------------------------------------------------------###################################################################################################################################
TTAAGGTTTTATATAAACTTTAGAGCTAATCGAGTCAACTATAATGCATAAATCAATAAGGATATTTTTTAAAATCTAGAAAACCTATACTTTTGTGCCACTTGGTTGTCTGTGAAGGTAGTGTTCCCATGTAACTAAGGCAAGCTAAGCAAAGTTCAAAATTTTCGTCGAATGAAATTCCAAATTTGTTTCGTCTTCAGTTTCCGGCACACCAAGTCCTCATTTGGACACCGCCGCCGTCGTCATCACC
************************************************************************************************************....(((((((..((.........((((...((.......))..))))))..))))))).......**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................................CATAAATCAATAAGGACATTTT...................................................................................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................................AATTTGTTTCGTCTTCAGTT................................................ 20 0 1 1.00 1 1 0 0 0 0 0
..........ATATAAACTTTAGAGCTAATCGA......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................GTTCAAAATTTTCGTCGAATG............................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................ACTTGGTTGACTGGGAAGGTT.................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0
............................................................................................................TCTGTGAAGGTAGTGTTCCCA......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................ATTTGGACACCGCCGCCGTCGTC...... 23 0 1 1.00 1 0 0 1 0 0 0
..................................TCAACTATAATGCATAAATCAATAAGGA............................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0
........TTATATAAACTTTAGAGCT............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................................................AGTTCAAAATTTTCGTCGAATGAAA......................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
...........................................................................................................................................................................................GTTTCGTCTTCAGTTTCCGGC.......................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................AGTTGAAAATTTTCGTCA................................................................................ 18 2 13 0.08 1 0 0 0 0 0 1
........................................................................................................................................................................................................................TGCTCAGTTGGACACCGTC............... 19 3 17 0.06 1 0 0 0 1 0 0
............................................................................................................................................................................................................................CATTTGCAAACCGCGGCCG........... 19 3 17 0.06 1 0 0 0 0 1 0
..............................................................................................................................................................AAAGTTTCGACGAATCAAAT........................................................................ 20 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

AATTCCAAAATATATTTGAAATCTCGATTAGCTCAGTTGATATTACGTATTTAGTTATTCCTATAAAAAATTTTAGATCTTTTGGATATGAAAACACGGTGAACCAACAGACACTTCCATCACAAGGGTACATTGATTCCGTTCGATTCGTTTCAAGTTTTAAAAGCAGCTTACTTTAAGGTTTAAACAAAGCAGAAGTCAAAGGCCGTGTGGTTCAGGAGTAAACCTGTGGCGGCGGCAGCAGTAGTGG
****************************************************************************....(((((((..((.........((((...((.......))..))))))..))))))).......************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.............................................................................................................................................................................................AAGCAGAAGTCAAAGGCCGTG........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................AAAAAATGTTAGATCTTTAGGAT................................................................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTGTGGTTCAGGAGTAAACC....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CAGAAGTCAAAGGCCGTGT....................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................TATTTAGTTAGTCCGATAA........................................................................................................................................................................................ 19 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................GGTGTGGTTCAGGAGAACACC....................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
................................................................AAAAAATTCTAGATCTCTTT...................................................................................................................................................................... 20 3 20 0.40 8 8 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTCAAGTTTTAAAAG.................................................................................... 15 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TCAGGGGTAATCCTGTG................... 17 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..................................................................AATATGTTAGATCTTTAGGAT................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................CTACTCGTTTCAAGTGTTAA....................................................................................... 20 3 13 0.15 2 0 0 0 0 0 0 2 0 0 0
...............................................................................................................CAGTTTCATCAGAAGGGTAC....................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
..............................................................AAAAAAAATTCTAGATCTCTT....................................................................................................................................................................... 21 3 16 0.13 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................AAAACACGGTGCTCCAAC.............................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0
...................................................................AAATGTTAGATCTTTAGGAT................................................................................................................................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................AATATTGTTAGATCTTTTGGAT................................................................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............TTTTTAAATCTCGATTAG........................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
................................................................AAAAATTGTTAGATCTTTAGGAT................................................................................................................................................................... 23 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Generated: 04/23/2015 at 02:42 PM