ID:

dsi_12394

 Coordinate:

x:10144248-10144397 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.7 -2.87 -2.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CACCGATGATAATATGAACAACAATTTGCTTTGCTACAGGAATTCAGATGGTATAATTTAGTTTTGATTTGTAACTATAATTTAACATAAAAAAAACAAGCAAGTTTGTACTCTTTAAAAATGCAGTGAAATGATATGATATGAATGAAAGAAGAGGTAATCGATGACGATGAAAAAAAAAATGATAAACTCTTTTTACAAACATAAATAATGTTATGAAACACGGATTAAGGGAAGAATACTTTTTTAA
*************************************************************************************************************.((((((....((.((................)).))....))))))............********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 M053
female body
 O001
Testis
 M024
male body
..................................TACAGGAATTCAGATGGTATAATT................................................................................................................................................................................................ 24 0 1 8.00 8 7 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTTATGAAACACGGATTAAGGGAAGAA........... 28 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0
........................TTTGCTTTGCTACAGGAATTCAGATGGTA..................................................................................................................................................................................................... 29 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TATGAAACACGGATTAAGGGAAGAATAC........ 28 0 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0
..........................TGCTTTGCTACAGGAATTCAGATGG....................................................................................................................................................................................................... 25 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................TAATGGATGAAGATGAAAAAAAAA..................................................................... 24 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................ATGACGATCAAAAAAAAA..................................................................... 18 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0
.............................................................................................................................................TGAATGAAAGAAGAGGTAATCGATGAC.................................................................................. 27 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTTATGAAACACGGATTAAGGGAA.............. 25 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
...............................TGCTACAGGAATTCAGATGGT...................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTTATGAAACACGGATTAAGGGAAGA............ 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
...............................TGCTACAGGAATTCAGATGGTATAATT................................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GAAAGAAGAGGTAATCGATGAC.................................................................................. 22 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
........................TTTGCTTTGCTACAGGAATTCAGATGGT...................................................................................................................................................................................................... 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTTAAAAATGCAGTGAAATGATATGA............................................................................................................... 26 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0
........................TTTGCTTTGCTACAGGAATTCAGATGG....................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................TTTGCTACAGGAATTCAGATGGTATA................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGAATGAAAGAAGAGGTAATCGAA..................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAAACACGGATTAAGGGAAGAATACTT...... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................TTCAGATGGTATAATTTAGTTTTGAT...................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................ACTCTTTAAAAATGCAGTGAAATGATA.................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGATATGAATGAAAGAAGAGGTAATCGA...................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAAACACGGATTAAGGGAAGAATACT....... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTAAAAATGCAGTGAAA....................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAATGTTATGAAACACGGATTAAGGGA............... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................TATGAATGAAAGAAGAGGTAATCGT...................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TATGAATGAAAGAAGAGGTAATCGAT..................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................TGCAGTGAAATGATATGATATGAATGA...................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAAACACGGATTAAGGGAAGAATACT....... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................TGCTTTGCTACAGGAATTCAGATG........................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TGAATGAAAGAAGAGGTAATCGATGA................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................TGCTTTGCTACAGGAATTCAGATGGTA..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTGAAACACGGATTAAGGGAAGAA........... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................GATGGTATAATTTAGTTTTGATTT.................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TGATATGATATGAATGAAAGAAGAG.............................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGATATGATATGAATGAAAGAAGAGG............................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................CAGTGAAATGATATGATATGAATGAA..................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................AAAAAAACAAGCAAGTTTGTACTCTT....................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................CAAGCAAGTTTGTACTCTTTAAAAATGC.............................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTATGAAACACGGATTAAGGGAAGAA........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGATATGATATGAATGAAAGAAGAGGT............................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................TTCAGATGGTATAATTTAGTTTTGATT..................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TAATGGATGAAGATGAAAAAA........................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGAATGAAAGAAGAGGTAATCGAT..................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGATATGAATGAAAGAAGAGGT............................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATGTTATGAAACACGGATTAAGGGA............... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AATGTTATGAAACACGGATTAAGGGA............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CACGGATTAAGGGAAGAATACTTTTT... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......GATAATATGAACAACAATTTGC............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TGATATGATATGAATGAAAGA.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................TCGATGACGATGAAAAAAAAAATGATA............................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................AGTGAAATGATATGATATGAATGAAAGA.................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGATATGAATGAAAGAAGAGGTAAT......................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................TGAATGAAAGAAGAGGTAATCGATG.................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CACGGATTAAGGGAAGAATACTTT..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................TTGCTACAGGAATTCAGATGGTATA................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................TGTACTCTTTAAAAATGCAGTGAAATGATAA................................................................................................................. 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................TGCTTTGCTACAGGAATTCAGATGGT...................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGAAAGAAGAGGTAATCGATGACGA................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATGATATGAATGAAAGAAGAGGTAAT......................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................ATCGATCACGACGAAAAAAA....................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................TAAAAAATGTTATGAAACACGGATTAAGGGA............... 31 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTTATGAAACACGGATTAAGGGAAGAATAC........ 31 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................TAATTTAGTTTTGATTTGTAACT.............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................TTTGCTTTGCTACAGGAATTCAGA.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTTATGAAACACGGATTAAGGGAAG............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTTATGAAACACGGATTAAGGGA............... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TATGAAACACGGATTAAGGGAAGAA........... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AACACGGATTAAGGGAA.............. 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGGATTAAGGGAAGAATACT....... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................ACACGGATTAAGGGAAGAATAC........ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................TGCAGTGAAATGATATGATATGAATGAA..................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGATATGATATGAATGAAAGAAGAGGTA........................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAAACACGGATTAAGGGAAGAATAC........ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCGATGTCGAGGAAAAAAAAA..................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCATGAAACACGGACTAAGGAA............... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCGTTGACGATGTAAAAAAA...................................................................... 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................TCGATGTCGAGGAAAAAAAAAAA................................................................... 23 3 4 0.50 2 0 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................GGTAATCTATGACGA................................................................................ 15 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGAAACACGGATCAAG.................. 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................ATGAGGACGATGAAAAAAAAAA.................................................................... 22 3 7 0.29 2 0 0 0 0 0 0 0 2 0 0 0
.............................................................................................................................................................................................................................CACGGATTCAGGGAA.............. 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCGTTGACGTTGGAAAAAAAAA.................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................AAACACGGACTAAGG................. 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GAAACACGGATCAAG.................. 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TATTGATGACGATGTAAAAAA....................................................................... 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................AAGGATGAGGATGAAAAAAAAAA.................................................................... 23 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TTGTCACTATAATTTAAAAAAAAA.............................................................................................................................................................. 24 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................AATCGATGAACATGCAAAAAAA...................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1
................................................TGGTATAATTTAGTTTTGAGGA.................................................................................................................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGAAATGATATGATA............................................................................................................. 16 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
..................................................................................................................................................................GATCACGATCAAAAAAAAA..................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................TCGATGTCGAGGAAAAA......................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATGATCGAAGAGGTTATCGA...................................................................................... 20 3 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................TATGAATGACAGAAGA............................................................................................... 16 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................TGAATGAAAGTAGAG.............................................................................................. 15 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................AAGGATGAGGATGAAAAAAAA...................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTCTTGAAACACGGATT..................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.......................................GAATTCAGATCGTATG................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TAGATGACGCTGACAAAAAA...................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTGGCTACTATTATACTTGTTGTTAAACGAAACGATGTCCTTAAGTCTACCATATTAAATCAAAACTAAACATTGATATTAAATTGTATTTTTTTTGTTCGTTCAAACATGAGAAATTTTTACGTCACTTTACTATACTATACTTACTTTCTTCTCCATTAGCTACTGCTACTTTTTTTTTTACTATTTGAGAAAAATGTTTGTATTTATTACAATACTTTGTGCCTAATTCCCTTCTTATGAAAAAATT
**********************************************************************************.((((((....((.((................)).))....))))))............************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
................................................................................................................................................................AGCTGCTGCTATTTTTTTTTTT.................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................TCTCCATTGGCTCCTGCTCCTTT........................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................GCTGCTGCTATTTTTTTTTTT.................................................................... 21 2 3 0.33 1 1 0 0 0 0 0
......................TTAAATGAAACGATGTC................................................................................................................................................................................................................... 17 1 4 0.25 1 0 0 0 1 0 0
......................................................................................................................................................................................ACCATTTGAGATAAATG................................................... 17 2 20 0.20 4 0 0 4 0 0 0
.................................................................................................................................................................................................AGAATGTTTGTTTTTATTACTA................................... 22 3 7 0.14 1 0 0 0 0 1 0
..............................................................AAACTAAAAATTGACATTAA........................................................................................................................................................................ 20 2 9 0.11 1 0 0 0 0 0 1
.......................................................................AGTGATATTAAATTGAAT................................................................................................................................................................. 18 2 20 0.10 2 0 2 0 0 0 0
........................AAACGAGACGATGTC................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 1 0 0 0
.................................................................................................................................................................GCTACTGCCACTTTT.......................................................................... 15 1 20 0.05 1 0 0 1 0 0 0
.......................................................................................................................................................................................CTATTTGAGATAAATGG.................................................. 17 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:10144198-10144447 - dsi_12394 CAC------------CGAT--GATAATATGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA---AAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGACGATGAAAA-------A-AAAAATGATA-AACTCTTTTTACAA-ACATAAA-----TAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AA
droSec2 scaffold_15:1383712-1383961 - CAC------------CGAT--GATAATATGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA---AAAA-----------------CAAGCATGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGACGATGAAAA-------A-AAAAATGATA-AACTCTTTTTACAA-ACATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AA
dm3 chrX:10686094-10686342 - CAC------------CGAT-----AATACGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGCATAAGTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA-CAAAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGACGATGAAAA-------AAAAAAATGATA-AACTCTTTTTACAA-ACATAAA-----AAATGTTAT--------------------GAAACAC--GTATTAA--GGAAGAATACTTTTTT---AA
droEre2 scaffold_4690:4444102-4444345 + CAC------------CAAT------ATACGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA-CAAAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGTCGATGAAAA------------AATGATA-AACTCTTTTTACAA-GCATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AA
droYak3 X:19255929-19256173 - CAC------------CAAT-----AATACGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAG-CAAAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGTAGATGAAAA------------AATGAAA-AACTCTTTTTACAA-GCATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AA
droEug1 scf7180000409901:7775-8058 - AAA------------AGAA-------------TCAAC---AATTTGCT-------TTGCTACC----GAAATTCT---------------------------------------------G-------------AAGGTTTAGTTTAACTTTGA-------TTTCT---------AA----ATAT---------------------AATTT---AACATTAAAACAACAACAACAACAACAACAAAAAACACAAGTTTGTACTCTTTA-AAAAAAAAACAAATGCAGTAAAAA--------------------------------------------------------AACGATTTGAAAATGAAAG-GACAAAGAGCCA-ATCGATGTCGATGAACAAAGCAAAAAAGAAACGATA-AACTCTT--TACAA-GCATAAACACAAAAATGTTAT--------------------GAAACGC--GGACTAA-GGGAAGAGAACTTTTTT---AA
droBia1 scf7180000302126:3624525-3624769 - CAA------------CAAC--TACAACAACA-ACAAC---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AAGGCTTAATTTAGTTTTGA-------TTTAT---------GA----ATAT---------A---A--TTTATAATTT---AACACGAAA-CGAAAA-----------------CAAACAAGTTTGTACTCTTTG-AAA---------ATGCAGTGAGATGAGAG-----------------------------------------------------------------------GACAAAGAGGTA-ATCGATGTCGATGAAAA---------AAAAACGATA-AACTCTT--TACAA-GCATAAA------AATGTTAC--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AA
droTak1 scf7180000415394:525766-526007 - TACATATAAAATCAACA---------------ACAAC---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AAGATTTAATTTAATTTTGA-------TTTAT---------AA----ATAT---------------------AATTT---AACATAAAA-CAAAAG-----------------CATACAAGTTTGTACTCTTTA-GAA---------ATGCAGTGAAAAG----GA--AG----------------------------------------------------------TGAAAG-GACAAAGAGGTA-ATCGATGTCGATGAAAA------------AACGATA-AACTCTT--TACAA-GCATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AA
droEle1 scf7180000490214:690629-690863 + AAA------------CA---------------ACAAC---AATTTGCT-------TTGCTACT----GGAATTCA---------------------------------------------G-------------AAGATTTAATTTAATTTTGA-------TTTAT---------AA----ATAT---------------------AATTT---AACATTAAA-CGAAAA-----------------AAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--AA----------------------------------------------------------TAAAAGGAAGGAAGAGGTAAATCGATATCGATAAAAA--------------AGATA-AACTCTT--TACAA-GCATAAA---A-AAATGTTAT--------------------AAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AA
droRho1 scf7180000761121:59633-59864 + CAA------------CA---------------ACAAG---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AGGATTTAATTTAATTTTGA-------TTTCT---------AA----ATAT---------------------AATTT---AACATAAAG-CTAAAG-----------------CAAGCAAGTTTGTACTCTT-----A---------ATGCAGTGAAATGATATGA--AA----------------------------------------------------------TGAAAG-GACGATGAGGTAAATCGATATCGATGAAAA------------AAAGATA-AACTCTT--TACAA-GCATAAA---AAAAATGTTAT--------------------GAAACAC--GGAGTAA-GGGAAGAATACTTT-TT---AA
droFic1 scf7180000453882:539917-540149 - CAA------------CA---------------ACAAC---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AAGTTCTAATTTAATTTCGA-------TTTTT---------AA----ATAT---------------------AATTT---AACATTAAA-TGAAAA-----------------CATACAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATAATATGA--AT----------------------------------------------------------TGAAAT-GACGGAGAGGTAAATCGATGTCGATGAAAG-------------AAGATA-AAC-CTT--TACAC-GCATAAA-----ATATGTTAT--------------------GAAACAC--GGATTAA-GAGAAGAATACTTTTTT---AA
droKik1 scf7180000302517:172524-172777 - CAA------------AAAACTAACAACAAGA-A-AAA---AATTTGCT-------TTGCTACCAGAAAGAATTCA---------------------------------------------A-------------AAGGTTT---------TTGA-------TT--T---------AA-CTTTTTTAAAT---TTTTATACCTATATAATTT---AACATAAAA-CGAAGA-----------------CAAACAAGTTTGTACTCTTTA-AAA---------GTGAAATGAAATGAAA-----------------------------------------------------------------CGA----AACGAAAAGGTAAATCGATGTCGATGAAAA-------A----AAAGATACAACTCTTAACACAA-GCATAAA-----GAATGTAAT--------------------GAA---T--GAGTT-A-GGAAAGAGAACTTTTTT---AA
droAna3 scaffold_13417:1281694-1281984 - CAA------------CTAC--AACAACAAGAATCAAGAAAATTTTGCT-------TTGCTATC----AGAATTCA---------------------------------------------CAAAAAAAGAAA--ATTGTATAATTTAATGTTGA-------TTTAT---------GGA---ATA-----------------TTTATAATTTTGAAACTTGAAG-GGAAAA-----------------CAAACAAGTTTGTACTCGTTTGAAAA--------ATGAAA------GAGACGGAGAG-----------------------------------------------CGAG-----AGAGAAA--GAGAGAGAGAGA-GAGGATGTCGATGAAAA--------------AGATAAGATTCTT--TACAA-GCAAA--------ACTGCAACAACAACAAAAAAAAACACAAAAAACACAAGGAGAAACGGAAAGAATACTTTTTT---AA
droBip1 scf7180000394795:1407-1643 + CAC------------TA---------------TC-AG---GACTTGCT-------TTGCTATC----AGAATTCA---------------------------------------------AC---TCAGAAAATAAAATATAATTTAACATTGA-------TTTAT---------GA----ATAT---------ATAGATTTGTATAATTT-------TGAAA-GAAAAA-----------------AAAACAAGTTTGTACACGTTTGAAAA--------ATGAGAA-----GAAACGA--AA----------------------------------------------------------AGAAAG----AAAGAGATAGAAAGAT-------------------------AGAAA-GATTCTT--TACAATGCAAACC-----GAAGAAAAA--------------------AAAACAA--AAACTAA-AGAAAGAATACTTTTTTGAAAA
droPer2 scaffold_13:959641-959874 - CAG------------AAAA--A--AAAACAA-CCAAA---AATTTGCT-------TTGCCATCACA-AGATTTGA---------------------------------------------C-------------AAGATTTAATTTCGTTTGGT--TTT-TTTTTT---------AA-GCGTTTT---------------------AATTT---CTTAT--AA-CTA---------------------AAGGCAGTTTGTACTCTTTG-AAAG--------ATGATGA--AAAAAAGCAA--AAATGGAAACTCTACACAGAAGAAGCTTAAAAGGAATACCGATGGGAAGTGAGTTGA--------------------------------------------------------------------------------------------AAAT--------------------GAAAGCG--CAAG-GC--AGGGGAATACTTTTAA---AA
droVir3 scaffold_12970:10277175-10277422 - TAT------------ATAT--ATATATATAT-ATATA---TATATA-------------------------------------------------------TATATATATATATTATATACGTACATATGTAT--ATGT--A--TTTGTGTATATCTA---TATAT---------ATT---ATT-----------------TTTATAATTTCTTAACGTA-------AAC-----------------CTTTAAAGTTTGTACTCTTTG-AAG---------AAAACGAAAATTGATTTGA--AC--------TTTAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAGGAAGA--------------------GGGAAAA--AAACGAA-AGGGAGGATACTTT-TT---AA
droMoj3 scaffold_6473:11179374-11179661 + TTG------------CGAT---------------TAC---AATTTACTATTTATTTTAT-------------TCATATGTATATATATATACGAATACGAGTATATGTATGTA---TGTATATGTATATATAT--ATCC--A--TTTATGTATATATATG-TATGTATGTATACTATT---ATT-----TTTT--------TTTTTAATTTTTTAACGTAAAA-CCT---------------------TTAAAAGTTTAAACTCTAAA-GAA---------A-ACAAAA-AACAAAA--------------------------------------------------------------------------CAAAACAAAA-AACAAAACTAAAAAAAA------------AATTAAA-AACACTT--AAAAA-ATGAAAA---A-AAAAAAAGT--------------------GAAAGAA--AAAT-GA-AGGGAAAATACTTT-TA---AA
droGri2 scaffold_15203:6571658-6571835 - TTG------------CGAT---------------TAC---AATTTACTATTTATTTTAT-------------TCATATAT---------------------------------------------------------ATATA----------TT-------TTTTT---------AA----ATAT---------------------AATTTCTTAACGTAAAC------------------------CTAAAAAGTTTGTACTCTTTG-AAAAA-------AAAAAAAAAATTG----------------------------------------------------------------------------------------ATTAAAATT--TAAAAA-------A-AAAAATG-------------CACAA-GAATGCA----------------------------------AAAATGA--AGATGAA-AGGAAAGATACTTT-TT---AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAC------------CGAT--GATAATATGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA---AAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGACGATGAAAA-------A-AAAAATGATA-AACTCTTTTTACAA-ACATAAA-----TAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................TACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATT.................................................................................................................................................................................................................................................................................................................................................................................2418.00800000007100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAA..............2815.00500000002000030000
..........................................TTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTA......................................................................................................................................................................................................................................................................................................................................................................................2914.00400000022000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------GAAACAC--GGATTAA-GGGAAGAATAC...........2813.00300000001101000000
............................................TGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGG........................................................................................................................................................................................................................................................................................................................................................................................2513.00300000002001000000
..........................................................................................................................................................................................................................................................................................................................................................................TGAATG-AAAGAAGAGGTA-ATCGATGAC...........................................................................................................................2712.00200000001001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAT--------------------GAAACAC--GGATTAA-GGGAA.................2512.00200000000100010000
........................................................TGCTACA----GGAATTCA---------------------------------------------G-------------ATGGT.......................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAT--------------------GAAACAC--GGATTAA-GGGAAGA...............2712.00200000010000010000
........................................................TGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATT.................................................................................................................................................................................................................................................................................................................................................................................2712.00200000002000000000
...............................................................................................................................................................................................................................................................................................................................................................................G-AAAGAAGAGGTA-ATCGATGAC...........................................................................................................................2212.00200200000000000000
..........................................TTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGT.......................................................................................................................................................................................................................................................................................................................................................................................2812.00200000011000000000
........................................................................................................................................................................................................................................................................TTTA-AAA---------ATGCAGTGAAATGATATGA--....................................................................................................................................................................................................................2612.00200000000110000000
..........................................TTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGG........................................................................................................................................................................................................................................................................................................................................................................................2712.00200000002000000000
...............................................T-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATA....................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGAATG-AAAGAAGAGGTA-ATCGAA..............................................................................................................................2411.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------GAAACAC--GGATTAA-GGGAAGAATACTT.........2811.00100000000100000000
.......................................................................TTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------T................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
....................................................................................................................................................................................................................................................................ACTCTTTA-AAA---------ATGCAGTGAAATGATA.........................................................................................................................................................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................................................................................................TGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGA...............................................................................................................................2811.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------GAAACAC--GGATTAA-GGGAAGAATACT..........2711.00100000001000000000
.........................................................................................................................................................................................................................................................................TTA-AAA---------ATGCAGTGAAA..............................................................................................................................................................................................................................1711.00100000001000000000
..............................................................................................................................................................................................................................................................................................................TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGT...............................................................................................................................2511.00100000000000010000
..............................................................................................................................................................................................................................................................................................................TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGAT..............................................................................................................................2611.00100000000100000000
..........................................................................................................................................................................................................................................................................................TGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-A................................................................................................................................................2711.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAC--GGATTAA-GGGAAGAATACT..........2611.00100100000000000000
............................................TGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATG.........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGAATG-AAAGAAGAGGTA-ATCGATGA............................................................................................................................2611.00100000010000000000
............................................TGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTA......................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
........................................................................................................................G-------------ATGGTATAATTTAGTTTTGA-------TTT..............................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
....................................................................................................................................................................................................................................................................................................TGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAG........................................................................................................................................2511.00100000000000010000
....................................................................................................................................................................................................................................................................................................TGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGG.......................................................................................................................................2611.00100000000001000000
............................................................................................................................................................................................................................................................................................CAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AA...............................................................................................................................................2611.00100000000010000000
............................................................................................................................................................................................................................AAA---AAAA-----------------CAAGCAAGTTTGTACTCTT........................................................................................................................................................................................................................................................2611.00100000000001000000
.......................................................................................................................................................................................................................................................CAAGCAAGTTTGTACTCTTTA-AAA---------ATGC.....................................................................................................................................................................................................................................2811.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT--------------------GAAACAC--GGATTAA-GGGAAGAA..............2611.00100000000000010000
....................................................................................................................................................................................................................................................................................................TGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGT......................................................................................................................................2711.00100000001000000000
.......................................................................TTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TT...............................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................TGAATG-AAAGAAGAGGTA-ATCGAT..............................................................................................................................2411.00100000001000000000
.......................................................................................................................................................................................................................................................................................................TATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGT......................................................................................................................................2411.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAT--------------------GAAACAC--GGATTAA-GGGA..................2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTAT--------------------GAAACAC--GGATTAA-GGGA..................2611.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--GGATTAA-GGGAAGAATACTTTTT......2611.00100000000001000000
.....................GATAATATGA-ACAAC---AATTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
....................................................................................................................................................................................................................................................................................................TGATATGA--TA----------------------------------------------------------TGAATG-AAAGA............................................................................................................................................2111.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TCGATGACGATGAAAA-------A-AAAAATGATA-...............................................................................................2711.00100000000010000000
.............................................................................................................................................................................................................................................................................................AGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGA............................................................................................................................................2811.00100000001000000000
.........................................................................................................................................................................................................................................................................................................TGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-AT..................................................................................................................................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................TGAATG-AAAGAAGAGGTA-ATCGATG.............................................................................................................................2511.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--GGATTAA-GGGAAGAATACTTT........2411.00100000001000000000
.......................................................TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATA....................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................................................................................................................................................................TGTACTCTTTA-AAA---------ATGCAGTGAAATGATAA........................................................................................................................................................................................................................3111.00100000001000000000
............................................TGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGT.......................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................TG-AAAGAAGAGGTA-ATCGATGACGA.........................................................................................................................2511.00100000000000010000
.......................................................................................................................................................................................................................................................................................................TATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-AT..................................................................................................................................2711.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATAC...........3111.00100000010000000000
............................................................................................................................................TAATTTAGTTTTGA-------TTTGT---------AA----CT...........................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
..........................................TTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------A...........................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAT--------------------GAAACAC--GGATTAA-GGGAAG................2611.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAT--------------------GAAACAC--GGATTAA-GGGA..................2411.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------GAAACAC--GGATTAA-GGGAAGAA..............2511.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAC--GGATTAA-GGGAA.................1711.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--GGATTAA-GGGAAGAATACT..........2111.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC--GGATTAA-GGGAAGAATAC...........2211.00100100000000000000
..........................................................................................................................................................................................................................................................................................TGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AA...............................................................................................................................................2811.00100000000000010000
....................................................................................................................................................................................................................................................................................................TGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-....................................................................................................................................2811.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------GAAACAC--GGATTAA-GGGAAGAATAC...........2611.00100000001000000000
.......................................................................................................................................TGGTATAATTTAGTTTTGA-------GGA..............................................................................................................................................................................................................................................................................................................................................................2270.14100000001000000000
droSec2
CAC------------CGAT--GATAATATGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA---AAAA-----------------CAAGCATGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGACGATGAAAA-------A-AAAAATGATA-AACTCTTTTTACAA-ACATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................GAGGTA-ATCGATGACGAT........................................................................................................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................................................................ATG-AAAGAAGAGGTA-ATC.................................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAG..........................................................................................................................................2211.0010010
..............................................CT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------AT..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------GAAACAC--GGATTAA-GGGAAGA...............2411.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGA..................2811.0010100
........................................................................................................................................................................................................................................................................................................ATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATC.................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................ATGATA-AACTCTTTTTACAA-AC..............................................................................2211.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTAT--------------------GAAACAC--GGATTAA-GGGA..................2711.0010100
.....................GATAATATGA-ACAAC---AATTTGCT-------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
......................................................................ATTCA---------------------------------------------G-------------ATGGTATAATTTAGT.............................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAA...........................................................................................................................................2111.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................GAGGTA-ATCGATGACGATGAAAA-------............................................................................................................2311.0010100
..............................................................................................................................................ATTTAGTTTTGA-------TTTGT---------AA----CT...........................................................................................................................................................................................................................................................................................................................................2111.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAT--------------------GAAACAC--GGATTAA-GGGA..................2311.0010100
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-....................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................................................................................................................................................AATG-AAAGAAGAGGTA-ATG.................................................................................................................................1911.0010100
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGA.........................................................................................................................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------GAAACAC--GGATTAA-GGGAAGA...............2311.0010010
...........................................................................................................................................ATAATTTAGTTTTGA-------TTTGT---------AA----CT...........................................................................................................................................................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAC--GGATTAA-GGGAAGAAT.............2111.0010010
........................................................................................................................................................................................................................................................................................................ATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-AT..................................................................................................................................2611.0010010
.......................................................................................................................................................................................................................................................................CTTTA-AAA---------ATGCAGTGAAAT.............................................................................................................................................................................................................................2011.0010010
...............................................................................................................................................................................................................................................................................................................A----------------------------------------------------------TGAATG-AAAGAAGAGGT......................................................................................................................................1811.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................ATGATA-AACTCTTTTTACAA-ACA.............................................................................2311.0011000
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGA............................................................................................................................................2011.0010100
..........................................................................................................................................................................................................................................................................................................GA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGT......................................................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................TATGA--TA----------------------------------------------------------TGAATG-AAAGAAGA.........................................................................................................................................2111.0010010
....................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGTA-ATCGATGACG..........................................................................................................................1911.0011000
...........................................................................................................................................................................................................................................................................................................................................................................GAATG-AAAGAAGAGGTA-AT..................................................................................................................................1911.0010010
CAC------------CGAT--GATAATATGA-AC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................CGATGACGATGAAAA-------A-AAAAATG...................................................................................................2311.0011000
...............................................................................................................................................................................................................................................................................................................A----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATC.................................................................................................................................2211.0010010
...........................................TTGCT-------TTGCTACA----GGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
CAC------------CGAT-----AATACGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGCATAAGTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA-CAAAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGACGATGAAAA-------AAAAAAATGATA-AACTCTTTTTACAA-ACATAAA-----AAATGTTAT--------------------GAAACAC--GTATTAA--GGAAGAATACTTTTTT---AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..........................................................................................................................................................................................................................TAAAA-CAAAAA-----------------CAAGCAAGTTTGTAC............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AGTTAGTTTTGA-------TTTGT---------A..................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAA....................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................TGT---------AA----CTAT---------------------AATTT---AACATAAAA-C.................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------GAAACAC--GTATTAA--GGAAGAATA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGCA......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................TA-AAA---------ATGCAGTGAAATGATATG.......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AGGTA-ATCGATGACGATGAACC-------............................................................................................................2211.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC--GTATTAA--GGAAGAATA............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GCATAAGTTAGTTTTGA-------TTTGT---------AA----C............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGA.........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-ACATAAA-----AAATGTTAT--------------------GAAAC..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATCGATGACGATGAAAA-------AAAAAAAT....................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAG..........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATCGATGACGATGAAAA-------AAAA........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATA......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TTTGA-------TTTGT---------AA----CTAT---------------------AAT.................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.AC------------CGAT-----AATACGA-ACAAC---AATTTGCT-------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................A--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGA...............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................GA-ACAAC---AATTTGCT-------TTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGAAATGATATGA--TA----------------------------------------------------------TGAATG-AA...............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.AC------------CGAT-----AATACGA-ACAAC---AATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TACTCTTTA-AAA---------ATGCAGTGAAATGATAT........................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CA----GGAATTCA---------------------------------------------G-------------ATGGCATAAGTTAGTTT...........................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAT--------------------GAAACAC--GTATT.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------GAAACAC--GTATTAA--GGAAGAATACTTT........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CTAT---------------------AATTT---AACATAAAA-CAAAAA-----------------CAAG.......................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................T-----AATACGA-ACAAC---AATTTGCT-------TTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TA-ATCGATGACGATGAAAA-------AAAAAAAT....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GATGAAAA-------AAAAAAATGATA-AACTC..........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................T-------TTGCTACA----GGAATTCA---------------------------------------------G-------------............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--GTATTAA--GGAAGAATA............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................T-----AATACGA-ACAAC---AATTTGCT-------TTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................A--TA----------------------------------------------------------TGAATG-AAAGAAGAGG.......................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AT-----AATACGA-ACAAC---AATTTGCT-------TTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-----AAATGTTAT--------------------GAAAC..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGT......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATGACGATGAAAA-------AAAAAA......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................A---------ATGCAGTGAAATGATAT........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGCT-------TTGCTACA----GGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CA----GGAATTCA---------------------------------------------G-------------ATGGCATAAGTTAG..............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------GAAACAC--GTATTAA--GGA..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGCATAAGTT................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA-CAAAA.............................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................T---AACATAAAA-CAAAAA-----------------CAAGCAAGTTTG...............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TAAGTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AAA.................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AAGTTTGTACTCTTTA-AAA---------ATGCAGTGAA...............................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTT---AACATAAAA-CAAAAA-----------------CAAGCAAG...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................ATCGATGACGATGAAAA-------AAAAAA......................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCTTTA-AAA---------ATGCAGTGAAATG............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AATACGA-ACAAC---AATTTGCT-------TTGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CA---------------------------------------------G-------------ATGGCATAAGTTAGT.............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................TGCTACA----GGAATTCA---------------------------------------------G-------------ATGGCAT.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................A---------------------------------------------G-------------ATGGCATAAGTTAGTTTTGA-------TTTGT---------...................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGATA-AACTCTTTTTACAA-ACATAAA-----A...................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------A...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................T---------AA----CTAT---------------------AATTT---AACATAAAA-CAAA..............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAG.............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................ATACGA-ACAAC---AATTTGCT-------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--GTATTAA--GGAAGAAT.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGA...............................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GGTA-ATCGATGACGATGAA.....................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AATACGA-ACAAC---AATTTGCT-------TTGCTACA----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAC------------CAAT------ATACGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAA-CAAAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGTCGATGAAAA------------AATGATA-AACTCTTTTTACAA-GCATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGT......................................................................................................................................2613.0030000210
..............................................................................................................................................................................................................................................................................................................TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGA...............................................................................................................................2513.0030000003
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGA............................................................................................................................................2012.0020000200
............................................TGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTA......................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAC--GGATTAA-GGGAAGAATACTT.........2611.0011000000
..........................................................................................................................................................................................................................................................................................................GA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-....................................................................................................................................2211.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--GGATTAA-GGGAAGAATA............1911.0010000100
....................................C---AATTTGCT-------TTGCTACA----GGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
........................................................TGCTACA----GGAATTCA---------------------------------------------G-------------ATGG........................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
........................................................TGCTACA----GGAATTCA---------------------------------------------G-------------ATGGT.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.........................................................................................................................................................................................................................................................................TTA-AAA---------ATGCAGTGAAATGATAT........................................................................................................................................................................................................................2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAT--------------------GAAACAC--GGATTAA-GGGA..................2311.0010000100
.............................................GCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGG........................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----AAATGTTAT--------------------GAAACAC--GG............................2111.0011000000
..............................................................................................................................................................................................................................................................GTTTGTACTCTTTA-AAA---------ATGCAGT..................................................................................................................................................................................................................................2411.0010000100
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGA.........................................................................................................................................2311.0010000100
.......................................................................................................................................................................................................................................................................................................TATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATC.................................................................................................................................2811.0010100000
........................................................................................................................................................................................................................................................................TTTA-AAA---------ATGCAGTGAAATGATATGA--....................................................................................................................................................................................................................2611.0010000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--GGATTAA-GGGAAGAATACTTT........2411.0011000000
..........................................................CTACA----GGAATTCA---------------------------------------------G-------------ATGGT.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................ATGATA-AACTCTTTTTACAA-GCAT............................................................................2411.0011000000
...................................AC---AATTTGCT-------TTGCTACA----GGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........................................................TGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATT.................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................................................................................................................................................................................................................TAAAA-CAAAAA-----------------CAAGCAAGTTTG...............................................................................................................................................................................................................................................................2311.0011000000
...............................................................................................................................................................................................................................................................................A---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------T.......................................................................................................................................................2311.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------GAAACAC--GGATTAA-GG....................1911.0010001000
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAG........................................................................................................................................2411.0010000100
..........................TACGA-ACAAC---AATTTGCT-------TTGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................................................................................................TACTCTTTA-AAA---------ATGCAGTGAAATGAT..........................................................................................................................................................................................................................2711.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAT--------------------GAAACAC--GGATTAA-GGGAA.................2411.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAT--------------------GAAACAC--GGATTAA-GGGAAG................2511.0010000010
..........................................................................................................................................................................................................................................................................................................GA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-AT..................................................................................................................................2411.0011000000
..................T------ATACGA-ACAAC---AATTTGCT-------TTGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..........................................TTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------A...........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-....................................................................................................................................2711.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................TG-AAAGAAGAGGTA-ATCGATGTCGA.........................................................................................................................2511.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAC--GGATTAA-GGGAA.................1911.0010000100
droYak3
CAC------------CAAT-----AATACGA-ACAAC---AATTTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGGTATAATTTAGTTTTGA-------TTTGT---------AA----CTAT---------------------AATTT---AACATAAAG-CAAAAA-----------------CAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-ATCGATGTAGATGAAAA------------AATGAAA-AACTCTTTTTACAA-GCATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................TTGCT-------TTGCTACA----GGAATTCA---------------------------------------------G-------------ATGG........................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...................................................................................................................................................................................................................................AAA-----------------CAAGCAAGTTTGTACTCT.........................................................................................................................................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................ATTT---AACATAAAG-CAAAAA-----------------CAAGCA.....................................................................................................................................................................................................................................................................2511.00101000000000
..........................................................................................................................................................................................................................................................GCAAGTTTGTACTCTTTA-AA...................................................................................................................................................................................................................................................2011.00101000000000
........................................................................................................................................................................................................................................................................................................ATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-AT..................................................................................................................................2611.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................TGAAAA------------AATGAAA-AACTCTT........................................................................................2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------GAAACAC--GGATTAA-GGGAAGAATACT..........2911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------GAAACAC--GGATTAA-GGGAAGAATACTT.........2811.00101000000000
..........................................................CTACA----GGAATTCA---------------------------------------------G-------------ATGGTAT.....................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................CGATGTAGATGAAAA------------AATGAAA-AACTCTT........................................................................................2911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAC--GGATTAA-GGGAAGA...............2111.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAA-GGGAAGAATACC..........1911.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................AGAGGTA-ATCGATGTAGATGAAAA------------.......................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGA.........................................................................................................................................2311.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTAA-GGGAAGAATACT..........1911.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTA-ATCGATGTAGAT........................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................AAGCAAGTTTGTACTCTTT.......................................................................................................................................................................................................................................................1911.00100000010000
.............................GA-ACAAC---AATTTGCT-------TTGCTACA----GG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................ATTTAGTTTTGA-------TTTGT---------AA----CT...........................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAA-AACTCTTTTTACAA-GC..............................................................................2011.00101000000000
.AC------------CAAT-----AATACGA-ACAAC---AATTTGCT-------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAT--------------------GAAACAC--GGATTAA-GGGAAG................2511.00100000010000
...................................................................................................................................................................................................................................................................TACTCTTTA-AAA---------ATGCAGTGAAAT.............................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------GAAACAC--GGATTAA-GGGAAGAAT.............2511.00100000010000
.....................................................................................................................................................................................................................................................................................................GATATGA--TA----------------------------------------------------------TGAATG-AAAGAAGAGGTA-AT..................................................................................................................................2911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAA-AACTCTTTTTACAA-................................................................................2111.00101000000000
droEug1
AAA------------AGAA-------------TCAAC---AATTTGCT-------TTGCTACC----GAAATTCT---------------------------------------------G-------------AAGGTTTAGTTTAACTTTGA-------TTTCT---------AA----ATAT---------------------AATTT---AACATTAAAACAACAACAACAACAACAACAAAAAACACAAGTTTGTACTCTTTA-AAAAAAAAACAAATGCAGTAAAAA--------------------------------------------------------AACGATTTGAAAATGAAAG-GACAAAGAGCCA-ATCGATGTCGATGAACAAAGCAAAAAAGAAACGATA-AACTCTT--TACAA-GCATAAACACAAAAATGTTAT--------------------GAAACGC--GGACTAA-GGGAAGAGAACTTTTTT---AASizeHit CountTotal NormTotal
No Reads
droBia1
CAA------------CAAC--TACAACAACA-ACAAC---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AAGGCTTAATTTAGTTTTGA-------TTTAT---------GA----ATAT---------A---A--TTTATAATTT---AACACGAAA-CGAAAA-----------------CAAACAAGTTTGTACTCTTTG-AAA---------ATGCAGTGAGATGAGAG-----------------------------------------------------------------------GACAAAGAGGTA-ATCGATGTCGATGAAAA---------AAAAACGATA-AACTCTT--TACAA-GCATAAA------AATGTTAC--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AASizeHit CountTotal NormTotal
No Reads
droTak1
TACATATAAAATCAACA---------------ACAAC---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AAGATTTAATTTAATTTTGA-------TTTAT---------AA----ATAT---------------------AATTT---AACATAAAA-CAAAAG-----------------CATACAAGTTTGTACTCTTTA-GAA---------ATGCAGTGAAAAG----GA--AG----------------------------------------------------------TGAAAG-GACAAAGAGGTA-ATCGATGTCGATGAAAA------------AACGATA-AACTCTT--TACAA-GCATAAA-----AAATGTTAT--------------------GAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AASizeHit CountTotal NormTotal
No Reads
droEle1
AAA------------CA---------------ACAAC---AATTTGCT-------TTGCTACT----GGAATTCA---------------------------------------------G-------------AAGATTTAATTTAATTTTGA-------TTTAT---------AA----ATAT---------------------AATTT---AACATTAAA-CGAAAA-----------------AAAGCAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATGATATGA--AA----------------------------------------------------------TAAAAGGAAGGAAGAGGTAAATCGATATCGATAAAAA--------------AGATA-AACTCTT--TACAA-GCATAAA---A-AAATGTTAT--------------------AAAACAC--GGATTAA-GGGAAGAATACTTTTTT---AASizeHit CountTotal NormTotal
No Reads
droRho1
CAA------------CA---------------ACAAG---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AGGATTTAATTTAATTTTGA-------TTTCT---------AA----ATAT---------------------AATTT---AACATAAAG-CTAAAG-----------------CAAGCAAGTTTGTACTCTT-----A---------ATGCAGTGAAATGATATGA--AA----------------------------------------------------------TGAAAG-GACGATGAGGTAAATCGATATCGATGAAAA------------AAAGATA-AACTCTT--TACAA-GCATAAA---AAAAATGTTAT--------------------GAAACAC--GGAGTAA-GGGAAGAATACTTT-TT---AASizeHit CountTotal NormTotal
No Reads
droFic1
CAA------------CA---------------ACAAC---AATTTGCT-------TTGCTACC----GGAATTCA---------------------------------------------G-------------AAGTTCTAATTTAATTTCGA-------TTTTT---------AA----ATAT---------------------AATTT---AACATTAAA-TGAAAA-----------------CATACAAGTTTGTACTCTTTA-AAA---------ATGCAGTGAAATAATATGA--AT----------------------------------------------------------TGAAAT-GACGGAGAGGTAAATCGATGTCGATGAAAG-------------AAGATA-AAC-CTT--TACAC-GCATAAA-----ATATGTTAT--------------------GAAACAC--GGATTAA-GAGAAGAATACTTTTTT---AASizeHit CountTotal NormTotal
No Reads
droKik1
CAA------------AAAACTAACAACAAGA-A-AAA---AATTTGCT-------TTGCTACCAGAAAGAATTCA---------------------------------------------A-------------AAGGTTT---------TTGA-------TT--T---------AA-CTTTTTTAAAT---TTTTATACCTATATAATTT---AACATAAAA-CGAAGA-----------------CAAACAAGTTTGTACTCTTTA-AAA---------GTGAAATGAAATGAAA-----------------------------------------------------------------CGA----AACGAAAAGGTAAATCGATGTCGATGAAAA-------A----AAAGATACAACTCTTAACACAA-GCATAAA-----GAATGTAAT--------------------GAA---T--GAGTT-A-GGAAAGAGAACTTTTTT---AASizeHit CountTotal NormTotal
No Reads
droAna3
CAA------------CTAC--AACAACAAGAATCAAGAAAATTTTGCT-------TTGCTATC----AGAATTCA---------------------------------------------CAAAAAAAGAAA--ATTGTATAATTTAATGTTGA-------TTTAT---------GGA---ATA-----------------TTTATAATTTTGAAACTTGAAG-GGAAAA-----------------CAAACAAGTTTGTACTCGTTTGAAAA--------ATGAAA------GAGACGGAGAG-----------------------------------------------CGAG-----AGAGAAA--GAGAGAGAGAGA-GAGGATGTCGATGAAAA--------------AGATAAGATTCTT--TACAA-GCAAA--------ACTGCAACAACAACAAAAAAAAACACAAAAAACACAAGGAGAAACGGAAAGAATACTTTTTT---AASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACACAAGGAGAAAC......................1811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACAAGGAGAAACGGAAAGA...............2311.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAAAGAATACTTTT.......1911.001010000
.................................................................................................................................................................................................................TTTGAAACTTGAAG-GGAAAA-----------------CAAA.......................................................................................................................................................................................................................................................................2411.001000100
.......................................................................................................................................................TGA-------TTTAT---------GGA---ATA-----------------TTTATAAT.................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACACAAGGAGAAACGGAAAGAATA............2711.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAAGGAGAAACGGAAAGAATAC...........2511.001010000
.........................................................................................................................................................................................................................................................................................ATGAAA------GAGACGGAGAG-----------------------------------------------C..................................................................................................................................................................1811.001010000
...........................................................................................................................................................................................................................................................................TGAAAA--------ATGAAA------GAGACGGA.....................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................................TTGAAG-GGAAAA-----------------CAAACAAGT..................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................A------GAGACGGAGAG-----------------------------------------------CGAG-----AGA.......................................................................................................................................................1911.001100000
......................ACAACAAGAATCAAGAAAATTTTGCC-------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................GAGAGA-GAGGATGTCGATGAA.....................................................................................................................2111.001001000
..............................................................................................................................................ATTTAATGTTGA-------TTTAT---------GGA---AT...........................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................GAG-----AGAGAAA--GAGAGAGAGAGA-GAG.................................................................................................................................2550.201000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAACACAAAAAACA.................................20170.122020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAAAAAACACAAAAAA...................................2090.111010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAAAAAACACAAA......................................18140.071010000
.................................................................................................................................................................................................................................................................................................................................................................AG-----AGAGAAA--GAGAGAGAGAGA-....................................................................................................................................21150.071000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACACAAAAAACA.................................18190.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAACACAAAAA....................................18200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................GAGAAA--GAGAGAGAGAGA-G...................................................................................................................................19200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................AGAAA--GAGAGAGAGAGA-GA..................................................................................................................................19200.051000010
droBip1
CAC------------TA---------------TC-AG---GACTTGCT-------TTGCTATC----AGAATTCA---------------------------------------------AC---TCAGAAAATAAAATATAATTTAACATTGA-------TTTAT---------GA----ATAT---------ATAGATTTGTATAATTT-------TGAAA-GAAAAA-----------------AAAACAAGTTTGTACACGTTTGAAAA--------ATGAGAA-----GAAACGA--AA----------------------------------------------------------AGAAAG----AAAGAGATAGAAAGAT-------------------------AGAAA-GATTCTT--TACAATGCAAACC-----GAAGAAAAA--------------------AAAACAA--AAACTAA-AGAAAGAATACTTTTTTGAAAASizeHit CountTotal NormTotal
No Reads
droPer2
CAG------------AAAA--A--AAAACAA-CCAAA---AATTTGCT-------TTGCCATCACA-AGATTTGA---------------------------------------------C-------------AAGATTTAATTTCGTTTGGT--TTT-TTTTTT---------AA-GCGTTTT---------------------AATTT---CTTAT--AA-CTA---------------------AAGGCAGTTTGTACTCTTTG-AAAG--------ATGATGA--AAAAAAGCAA--AAATGGAAACTCTACACAGAAGAAGCTTAAAAGGAATACCGATGGGAAGTGAGTTGA--------------------------------------------------------------------------------------------AAAT--------------------GAAAGCG--CAAG-GC--AGGGGAATACTTTTAA---AASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................AGCAA--AAATGGAAACTCTACACAGAAGA.............................................................................................................................................................................................2812.002200000
.....................................................................................................................................................................................................................................................................................................................................................CGATGGGAAGTGAGTTGA--------------------------------------------------------------------------------------------AAAT--------------------GAAAG..................................2712.002000002
..............................................................................................................................................................................................................................................................................................................AAATGGAAACTCTACACAGAAGAA............................................................................................................................................................................................2412.002200000
...........................................................................................................................................................................................................................................................................................................A--AAATGGAAACTCTACACAGG................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................CGATGGGAAGTGAGTTGA--------------------------------------------------------------------------------------------AAAT--------------------.......................................2211.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------GAAAGCG--CAAG-GC--AGGG.................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................CGATGGGAAGTGAGTTGA--------------------------------------------------------------------------------------------AAAT--------------------GA.....................................2411.001000001
.........................................................................GA---------------------------------------------C-------------AAGATTTAATTTCGT.............................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droVir3
TAT------------ATAT--ATATATATAT-ATATA---TATATA-------------------------------------------------------TATATATATATATTATATACGTACATATGTAT--ATGT--A--TTTGTGTATATCTA---TATAT---------ATT---ATT-----------------TTTATAATTTCTTAACGTA-------AAC-----------------CTTTAAAGTTTGTACTCTTTG-AAG---------AAAACGAAAATTGATTTGA--AC--------TTTAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAGGAAGA--------------------GGGAAAA--AAACGAA-AGGGAGGATACTTT-TT---AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................TAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------T.............................................................................................................................26146.00460020200000000000000000003118743220000001100000000000000000000000
..........................................................................................................................................................................................................................................................................TG-AAG---------AAAACGAAAATTGATTTGA--AC--------TT........................................................................................................................................................................................................28130.00300010000010110000000000000017600000000002100000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GC..............................................................................24119.0019000010100130000000000001112300000000005000000000000000000000000
..........................................................................................................................................................................................................................................................................TG-AAG---------AAAACGAAAATTGATTTGA--AC--------T.........................................................................................................................................................................................................27117.0017001010000040000000000000102300040100000000000000000000000000000
..........................................................................................................................................................................................................................................................................TG-AAG---------AAAACGAAAATTGATTTGA--AC--------..........................................................................................................................................................................................................26110.0010001002010000000000000000030001020000000000000000000000000000000
...........................................................................................................................................................................................................................................................................G-AAG---------AAAACGAAAATTGATTTGA--AC--------TT........................................................................................................................................................................................................2719.009002000000010000000000000001300010000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------T.............................................................................................................................2719.009002010000000000000000000103000010000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAGG...............................................................2717.007000010000000000000000000102200010000000000000000000000000000000
..........................................................................................................................................................................................................................................................TAAAGTTTGTACTCTTTG-AAG---------AAA......................................................................................................................................................................................................................................2416.006000010000000000000000000003100100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAACGAA-AGGGAGGATACTTT-.......2416.006000000001020000000000000001000000100001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GCA.............................................................................2515.005001000000000000000000000002200000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ATGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GC..............................................................................2515.005000000000010000000000000000210000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAA--AAACGAA-AGGGAGGATACTTT-.......2615.005000001001030000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TAATTTCTTAACGTA-------AAC-----------------CTTTAAAGT..................................................................................................................................................................................................................................................................2715.005001000000010000000000000000010020000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTTGA--AC--------TTTAAAAA-ACAAAA-----------------------------------CGAGAA----A.............................................................................................................................................2815.005003000000000000000000000101000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................A----ATGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GC..............................................................................2614.004000000000000000000000001001100000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------TT............................................................................................................................2714.004000000000000000000000000012100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAACGAA-AGGGAGGATACTTT-T......2514.004000000101010001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TCTTAACGTA-------AAC-----------------CTTTAAAGTTTG...............................................................................................................................................................................................................................................................2514.004002000000000000000000000110000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTTAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------T.............................................................................................................................2813.003000000000000000000000000003000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGA--AC--------TTTAAAAA-ACAAAA-----------------------------------CGAGAA----A.............................................................................................................................................2613.003001000000000000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTGA--AC--------TTTAAAAA-ACAAAA-----------------------------------CGAGAA----A.............................................................................................................................................2713.003000010000000000000000000100010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAGGA..............................................................2813.003001010000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TAAAGTTTGTACTCTTTG-AAG---------AAAACGA..................................................................................................................................................................................................................................2813.003000000000010000000000000101000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GCAAAA..........................................................................2813.003000010000000000000000000000200000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTGTACTCTTTG-AAG---------AAAACGAAAAT..............................................................................................................................................................................................................................2613.003000010000000000000000000000100010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCAAAAA-----AAAGGAAGA--------------------GGGAAAA--AA............................2613.003002000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................G-AAG---------AAAACGAAAATTGATTTGA--AC--------T.........................................................................................................................................................................................................2613.003000100000000000000000000000100000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAG................................................................2712.002001000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTTG-AAG---------AAAACGAAAATTGATTTGA--AC--------..........................................................................................................................................................................................................2812.002000000000000000000000000011000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTTGTACTCTTTG-AAG---------AAAACGAAAAT..............................................................................................................................................................................................................................2712.002000000000010000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................TAACGTA-------AAC-----------------CTTTAAAGTTTGTACTCT.........................................................................................................................................................................................................................................................2812.002000000000000000000000000100100000000000000000000000000000000000
.......................................................................................................................................................................................T-----------------TTTATAATTTCTTAACGTA-------AAC-----------------CTT........................................................................................................................................................................................................................................................................2612.002000000000000000000000000001000010000000000000000000000000000000
....................................................................................................................................................................................................................TTAACGTA-------AAC-----------------CTTTAAAGTTTGTAC............................................................................................................................................................................................................................................................2612.002000000000000000000000000001001000000000000000000000000000000000
................................................................................................................................................................................................................TTTCTTAACGTA-------AAC-----------------CTTTAAAGTTTG...............................................................................................................................................................................................................................................................2712.002000000000000000000000000001100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCTTTG-AAG---------AAAACGAAAATTGATTTGA--....................................................................................................................................................................................................................2812.002000000000000000000000000011000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................G-AAG---------AAAACGAAAATTGATTTGA--AC--------TTT.......................................................................................................................................................................................................2812.002000000000000000000000000001000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTG-AAG---------AAAACGAAAATTGATTTGA--AC--------T.........................................................................................................................................................................................................2812.002000000000000000000000000002000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GCAA............................................................................2612.002000000000000000000000000002000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TACTCTTTG-AAG---------AAAACGAAAATTGATT.........................................................................................................................................................................................................................2812.002000000000000000000000000010100000000000000000000000000000000000
.....................................................................................................................................................................................................................TAACGTA-------AAC-----------------CTTTAAAGTTTGTACTC..........................................................................................................................................................................................................................................................2712.002000000000000000000000000002000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAACGAA-AGGGAGGATACTTT-.......2511.001000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GTACTCTTTG-AAG---------AAAACGAAAATTGA...........................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAAGA--------------------GGGAAAA--AA............................1811.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GAAAA---------TTCACAGGAAG-------------AAA----------------...................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TA-------AAC-----------------CTTTAAAGTTTGTACTCTTTG-AA...................................................................................................................................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TACTCTTTG-AAG---------AAAACGAAAATTGA...........................................................................................................................................................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................TTATAATTTCTTAACGTA-------...............................................................................................................................................................................................................................................................................................1811.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GATTTGA--AC--------TTTAAAAA-ACAAAA-----------------------------------CGA.....................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TGTACTCTTTG-AAG---------AAAACGAAAATTGA...........................................................................................................................................................................................................................2811.001000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCAAAAA-----AAAGGAAGA--------------------GGGAAAA--G.............................2511.001000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................T---ATT-----------------TTTATAATTTCTTAACGTA-------AAC-----------------CT.........................................................................................................................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CTTTG-AAG---------AAAACGAAAATTGATTTGA--....................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAG................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAA--AAACGAA-AGGGAGGATACTTT-.......2711.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------TT............................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------------GGGAAAA--AAACGAA-AGGGA.................2111.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................TAACGTA-------AAC-----------------CTTTAAAGTTTGTACT...........................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGA--AC--------TTTAAAAA-ACAAAA-----------------------------------CGAGAA----ATG...........................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................TAACGTA-------AAC-----------------CTTTAAAGTTTGTAC............................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTG-AAG---------AAAACGAAAATTGATTTGA--AC--------..........................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------..............................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CTTTAAAGTTTGTACTCTTTG-AAG---------.........................................................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GAAAA---------TTCACAGGAAG-------------AAA----------------AT-GC..............................................................................2311.001000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AAA----------------AT-GCAAAAA-----AAAGGAAGA--------------------GG.....................................2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------..............................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCTTTG-AAG---------AAAACGAAAATTGATT.........................................................................................................................................................................................................................2511.001000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTTCTTAACGTA-------AAC-----------------CTTTAAAGT..................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAGGA..............................................................2711.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCAAAAA-----AAAGGAAGA--------------------GGGAAAA--AAA...........................2711.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................TT---ATT-----------------TTTATAATTTCTTAACGTA-------AAC-----------------CT.........................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TTGTGTATATCTA---TATAT---------ATT---ATT-----------------.........................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................ATAATTTCTTAACGTA-------AAC-----------------CTTTAAAGTC.................................................................................................................................................................................................................................................................2911.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................TTTATAATTTCTTAACGTA-------AAC-----------------CTTTAAA....................................................................................................................................................................................................................................................................2911.001000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGGAAGA--------------------GGGAAAA--A.............................1811.001000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................TAT--ATGT--A--TTTGTGTATATCTA---TATAT---------A..................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AT-GCAAAAA-----AAAGGAAGA--------------------GGG....................................2111.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TAATTTCTTAACGTA-------AAC-----------------CTTTAAAGTT.................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................AC-----------------CTTTAAAGTTTGTACTCTTTG-AA...................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................G---------AAAACGAAAATTGATTTGA--AC--------TT........................................................................................................................................................................................................2411.001000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TAAAAA-ACAAAA-----------------------------------CGAGAA----ATGAAAT---------..............................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--AAACGAA-AGGGAGGATACTTT-T......2411.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................A----ATGAAAA---------TTCACAGGAA....................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TGTACTCTTTG-AAG---------AAAACGAAAA...............................................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................TCTTAACGTA-------AAC-----------------CTTTAAAGTTTGTAC............................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TTCTTAACGTA-------AAC-----------------CTTTAAAGTTTG...............................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGGAAGA--------------------GGGAAAA--AA............................1911.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CTTAACGTA-------AAC-----------------CTTTAAAGT..................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TGTACTCTTTG-AAG---------AAAA.....................................................................................................................................................................................................................................1811.001000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TACTCTTTG-AAG---------AAAACGAAAATTGAT..........................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCAAAAA-----AAAGGAAGA--------------------GGGAA..................................2211.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GAA----ATGAAAA---------TTCACAGGAAG-------------......................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TAAAGTTTGTACTCTTTG-AAG---------AAAAC....................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAA-AGGGAGGATAC...........1811.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA-----AAAGGAAGA--------------------GGGAAAA--AAACGA........................2711.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAGGAA.............................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................ACAAAA-----------------------------------CGAGAA----ATGAAAA---------T.............................................................................................................................2011.001000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................CATATGTAT--ATGT--A--TTTGTGT...........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................AAA-ACAAAA-----------------------------------CGAGAA----ATGAAAA---------..............................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGAAAA---------TTCACAGGAAG-------------AAA----------------A..................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------GGGAAAA--AAACGAA-AGGGAGGATA............2511.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTGTACTCTTTG-AAG---------AAAACG...................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................TTTGTGTATATCTA---TATAT---------ATT---ATT-----------------.........................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GAGAA----ATGAAAA---------TTCACAGGAAG-------------AAA----------------A..................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................A-------AAC-----------------CTTTAAAGTTTGTACTCTTT.......................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................A----ATGAAAA---------TTCACAGGAAG-------------AAA----------------AT-GCAA............................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAAGG...............................................................2811.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TAAAGTTTGTACTCTTTG-AAG---------AAAACG...................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CACAGGAAG-------------AAA----------------AT-GCAAAAA-----AAA.................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................T-----------------TTTATAATTTCTTAACGTA-------AAC-----------------CT.........................................................................................................................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................ACATATGTAT--ATGT--A--TTTGTGTATATC......................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TAAAGTTTGTACTCTTTG-AAG---------AAAACGAA.................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AATTGATTTGA--AC--------TTTAAAAA-ACAAAA-----------------------------------........................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................TATACGTACATATGTAT--ATGT--.....................................................................................................................................................................................................................................................................................................................................................................................2120.501000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................ATATGTAT--ATGT--A--TTTGTGT...........................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................CATATGTAT--ATGT--A--TTTGTGTC..........................................................................................................................................................................................................................................................................................................................................................................2220.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AT---------ATT---ATT-----------------TTTATAATTT...............................................................................................................................................................................................................................................................................................................1840.251000000000000000000000000000000000000000000000000000000000001000
droMoj3
TTG------------CGAT---------------TAC---AATTTACTATTTATTTTAT-------------TCATATGTATATATATATACGAATACGAGTATATGTATGTA---TGTATATGTATATATAT--ATCC--A--TTTATGTATATATATG-TATGTATGTATACTATT---ATT-----TTTT--------TTTTTAATTTTTTAACGTAAAA-CCT---------------------TTAAAAGTTTAAACTCTAAA-GAA---------A-ACAAAA-AACAAAA--------------------------------------------------------------------------CAAAACAAAA-AACAAAACTAAAAAAAA------------AATTAAA-AACACTT--AAAAA-ATGAAAA---A-AAAAAAAGT--------------------GAAAGAA--AAAT-GA-AGGGAAAATACTTT-TA---AASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................AACTAAAAAAAA------------AATTAAA-AACACTT--......................................................................................2611.001100000
..................................................................................................................................................................................................................TTTTAACGTAAAA-CCT---------------------TTAAA.....................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT--------------------GAAAGAA--AAAT-GA-AGGGAAA...............2311.001100000
............................................TACTATTTATTTTAT-------------TCATATGTATATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................TTAATTTTTTAACGTAAAA-CCT---------------------TT........................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAA-AACAAAACTAAAAA......................................................................................................................2320.501100000
.........................................................................................................................................................................................................................................................................................A-ACAAAA-AACAAAA--------------------------------------------------------------------------CAAAACAAAA-....................................................................................................................................2470.141100000
........................................................TAT-------------TCATATGTATATATATATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2290.111000010
...................................................................................................................................................ATGTATATATATG-TATGTATGT........................................................................................................................................................................................................................................................................................................................................................22190.051100000
droGri2
TTG------------CGAT---------------TAC---AATTTACTATTTATTTTAT-------------TCATATAT---------------------------------------------------------ATATA----------TT-------TTTTT---------AA----ATAT---------------------AATTTCTTAACGTAAAC------------------------CTAAAAAGTTTGTACTCTTTG-AAAAA-------AAAAAAAAAATTG----------------------------------------------------------------------------------------ATTAAAATT--TAAAAA-------A-AAAAATG-------------CACAA-GAATGCA----------------------------------AAAATGA--AGATGAA-AGGAAAGATACTTT-TT---AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................AT---------------------AATTTCTTAACGTAAAC------------------------CTA........................................................................................................................................................................................................................................................................2211.00110

Generated: 05/18/2015 at 03:07 PM