ID:

dsi_12377

 Coordinate:

2l:271613-271762 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.1 -8.3 -8.2

Flybase annnotation

CDS [2l_271763_271963_-]; exon [2l_271763_272106_-]; intron [2l_271289_271762_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATATCCATCTGCCATTAGAATCACGAACGCAGCGCGGTTTAAAGTTCACTCTGATTGTACTTGTACGAACGCATCTATTAAGATGCACAGAGAAAATGAATAGGACAGTGGTTAGAATCATGGGATTTTCTTGAGTGACGAAGAGAAGGATTTATCAAGGGCTCCAGTGTATAAAAGTTAGAGCTTTTTGAAGATCT
*******************************************************************************************************.((.......((........((((((....))))))........)).........))****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 O001
Testis
 M053
female body
 SRR902009
testis
 GSM343915
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................ACAGAGAAAATGAATAGGACA.......................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................ATTCAAATACCTAACGTTCCTGGAT........................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
................................CTAACGTTCCTGGATGCGGTA..................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................GAAGAGAAGGATTTATCAAGGGC................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGAGTGACGAAGAGAAGGAT.............................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CTGATTGTACTTGTACGA................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGAAGAGAAGGATTTATCAAGGGCT.................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAAAGTTCACTCTGATTG............................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................GGTTAGAATCATGGGATT...................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................CATCTGCCATTAGAATCACGA........................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................TTAAAGTTCACTCTGATTGTACTT....................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................TCACTCTGATTGTACTTGTAC................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TTCAAATACCTAACGTTCCTG.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................GTTCACTCTGATTGTACTTGTAC................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................CAAATTCAAATACCTAACG.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GAAGAGAAGGATTTATCAAGGGCTCC................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..CATCATCCCTGGGGGGGCAA.................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AGAGAATGAGTAGGACAGTGG...................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........CTGGGGGGGCAAATTCAAATAC.......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TACTTGTACGAACGCATCTAT....................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TTCTTGAGTGACGAAGAGAAGGATT............................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................AAATTCAAATACCTAACGTTCCTGGAT........................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................TCAAATACCTAACGTTCCTGGA............................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AATGAATAGGACAGTGGTTAGA................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TTGTTACTTGTACGAACGCATC.......................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................GCACAGAGAAAATGAATAGGACAG......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................CATTAGAATCACGAACGCAGC.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................CAGCGCGGTTTAAAGTTCACT................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AGGACAGTGGTTAGAATCATGGG......................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..CATCATCCCTGGGGGGGCAAA................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGAGAAGGATTTATCAAGGGCG.................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGTGTATAAAAGTTAGAGCC............ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGAAGGATTTATCAAGGGCTC................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................AATACCTAACGTTCCTGGATG.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................AGCGCGGTTTAAACTTCAC.................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................ACAGAGAAGATGAGTAGGACA.......................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................CCTGGATGCGGTAATATCCATC............................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGAGAAAATGAATAGGACA.......................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................AAATACCTAACGTTCCTGG............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................ATACCTAACGTTCCTGGAT........................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TTCAAATACCTAACGTTCCTGGAT........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................CAAATACCTAACGTTCCT............................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................ACCTAAGGTTCCTGG............................................................................................................................................................................................................. 15 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................GAAAATGAGTAGGACGGTGG...................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................ACGGAGAGGATGAATAGGACA.......................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................CACTCTGATTGTTCTGGT..................................................................................................................................... 18 2 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0
....................................................................................................................................GGGATGCACAGAGAAAATGAA................................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................AGCGCGGTTTAAAGTTCGT.................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................ACTCTGATTGTTCTGGT..................................................................................................................................... 17 2 14 0.21 3 0 0 0 0 0 0 0 0 1 1 1
.......................................TCCTGGAGGCAGTAATATAC............................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................TGGCATTAGAATGACGAAC......................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GAACAGAAGGATTTATAA........................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................GAGATGCACAGAGAAAAT.................................................................................................... 18 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAGGGAAGGATTTATGA........................................ 17 2 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
..................................................................................................................................................................................TTTTCTTCAGTAATGAAGAG.................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
.................................TATCGATCCTGGATGCAGT...................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................GAAGCTCGGTTTAAACTTC...................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................GGCATTAGTATCACGAA.......................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................AAAAGGATAGTGGTTAGTATC.............................................................................. 21 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0
.............................AACCTAAGGTTCCTGG............................................................................................................................................................................................................. 16 2 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................ATCAAGGGTTCCAGTC............................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................GCACGGTTTAAACTTCA..................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................CGCGGTTTAAACTTCG..................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................CGGGCGGTTTAAAGTTCG..................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGGTAGTAGGGACCCCCCCGTTTAAGTTTATGGATTGCAAGGACCTACGCCATTATAGGTAGACGGTAATCTTAGTGCTTGCGTCGCGCCAAATTTCAAGTGAGACTAACATGAACATGCTTGCGTAGATAATTCTACGTGTCTCTTTTACTTATCCTGTCACCAATCTTAGTACCCTAAAAGAACTCACTGCTTCTCTTCCTAAATAGTTCCCGAGGTCACATATTTTCAATCTCGAAAAACTTCTAGA
******************************************************************************************.((.......((........((((((....))))))........)).........))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................CCTGTCACCAATCTTAGTACC.......................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0
................................................................................................................................................................CACCAATCTTAGTACCCTAAA..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CATTATAGGTAGACGGTAAT.................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
................................GATTGCAAGGACCTACGCCAT..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................CTCACTGCTTTTCTTCCTAAA............................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................GTTTATGGATTGCAAGGACCT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................CGTCGCGCCAAATTTCAA....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................CGCCATTATAGGTAGACGGTAATC................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................GACGGTAATCTTAGTGCTTGC........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................AAGTGAGACTAACATGAACAT.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................CTAACATGAACATGCTTGCGTA........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................CTACGTGTCTCTTTTACTTATC.............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................GTAGACGGTAATCTTAGTGCTT.......................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................TCTACGTGTCTCTTTTACTTATCCTGT.......................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................TATCCTGTCACCAATCTTAGTA............................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................CCATTATAGGTAGACGGTAAT.................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGAGGTCACATATTTTCAATCT............... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................TGTCTCTTTTACTTATCCTGT.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................AGTTTATGGATTGCAAGGACC............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................AAGTTTATGGATTGCAAGGAC.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................AAGGACCTACGACAT..................................................................................................................................................................................................... 15 1 16 0.25 4 0 0 0 0 2 1 1 0
............................................................................................ATATCTAGTGAGACGAACAT.......................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0
...................................................ATTATTGCTAGACGGTAAACT.................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0
.......................................................................................GGTAAATTTCAAGTGAGACGA.............................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 1 0 0
......................................AAGGACCTACACCAT..................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 1 0 0 0
........................................................AGGTAGACGGTAATA................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................GTTAGTGCTTGCATCG.................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:271563-271812 - dsi_12377 TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATATCCAT---------------CTGCCATTAGAA--TCACGAA-CGC--AG------------------------------CGCGGTTTAAAGTTCAC--TCTG---------------------------ATT--GT------------------------ACTTGTACGAACGCATCTATTA---------AGATGCACAGAGAAA-ATGAAT-AGGA--CAGTGGTTAGAAT-CATGGGATTTTCTTGA-------------------GTGACGAAGA-GAAGGATTT-----ATCAAGGGCTCCAGTGTATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCTTTTTGAAGATCT
droSec2 scaffold_841:930-1181 - TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATATCCAT---------------CTGCCATTAGAA--TCACGAA-CGC--AG------------------------------CGCGGTTTAAAGTTCAC--TCTG---------------------------ATT--GTT-----------------------ACTTGTACGAACGCATATATTA---------AGATACACAGAAAAAAATGAAT-AGGA--CAGTGGTTAGAAT-CATGGGATTTTCTTGA-------------------GTGATGAAGA-GATGGATTT-----ATGAAGGGCTCCAGTGTATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCTTTTTGAAGATCT
dm3 chr2L:285235-285482 - TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATATCCAT---------------CTCCCATTAGAA--TCACGAA-CGC--AG------------------------------CGTGGTTTAAAGTTCAC--TCCG---------------------------ATT--GTT-----------------------ACTTGTACGCACGCATCTATTA---------AGATACACAGAGAAA-ATGAAT-AGGA--CAGTAGTTAGAAT-CATGGGCTTTTCTTGA-------------------GTGATGAA----GAGGATTT-----GTCAAGGTCTCCAGTGTATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCTTTTTGAAGATCT
droEre2 scaffold_4929:336361-336623 - TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATCTCCAC---------------CTCCCATTAGAA--ACGCGAA-CGC--AG------------------------------CGCGGCTTCAAGTTCAC--TCTG---------------------------ATT--GT-----------------------------TTTGCACGCATCTATTA---------AGATACACAGAGAAA-ATGAGT-AGGG--TATTAGTTAGAAT-CATCGGCTTTTCTTGA-------------------GTGATGAAGA-GAGGGATAT-----ATCTATGGGTACCGTGTATAAAATACCC--GAAG-------------------------------------------------------------------------------------CAATAGCTCCAGAAA--------GCTTTCGGAAGATTT
droYak3 2L:279357-279641 - TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTTACGTTCCTGGATGCGGTAATCTCCAT---CTCCATCCCCACCTTCCATTAGAA--ACACGAA-CGC--GG------------------------------CGCGGCTTAAAGTTCAC--TCTG---------------------------ATT--GT-----------------------------CGTGCACGCATCTATTAAGATGAATAAGATACACATAGAAA-ATGAGT-AGGA--TATTAGTTGCAAA-GATGGGCTTTTCGTGA-------------------GTGATGAAGG-AAAGGTTAC-CCATATCTAGTA---CCGTGTATAAAATACCCA-GGA-------------------------------------------------------------------------------------GTCAGAACTCCTGAAC--------G-TTTTTTAAGATCT
droEug1 scf7180000409554:1031448-1031728 - TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATATTTAACGTTCCTGGATGCGGTAATCTCCAA---------------CTTTCATTAGAA--ACACGAA-CATATAA------------------------------CGTTGTTTAAAGGTCAC--TCGG---------------------------TTC--GCAT-CTTGTAGGGTTGAAATCTCTAACTGGT-TACATGCATCTATTA---------AACTACACAGAGAAA-ATGCACCAGGA--AGGTGGTTGAAAT-TATAGGCTTCACCTAC-------------------ATAAGAAATATGTAGGATAT-----TCCTATGCCTTCTG----TTGTCTATG--------------------------------------------------------------------------------------TATCAGTTTC----------A--------ATTTCATATAGGCAT
droBia1 scf7180000302261:3553267-3553571 + TCC-----------ACCATCCCTGGGGGGGCAAATTTAAATATCTAACGTTCCTGGATGCGGTAATCTCCAT---------------CTCCCATTAGAC--ACACGAA-CCCAGAG------------------------------AGCGG-TTAAAGTTCAC--TCGG---------------------------TTT--GTTT-TTGGCACGGTTGGATTGCCTAACTGGTTTACACGCATCCATTA---------AGCTACACAGAGAAA-ATGCAT-CCAG--AAGTGGCTAGAATTCATAGAGATATCTTCCGGATCACATAAAGGGGGATGTGATCCA----AAAGATAT-----TTCTATGGCTTC----TATAAAGCATCCCCTAAGTT--------------------------------------------------------------------------------------GATTTTCAAA-T--------ACTTTTCTAAGATCT
droTak1 scf7180000413017:239047-239351 + TCC-----------ACCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATCTA--TCTATTCTGTCTACATCTCCCATTAGAT--ACACG----------------------------------------CGCGGTTTAAAGTTCAC--TCGG---------------------------TTC--GTTTATTGGCACGGTTGGATTGCCTAACTGGTTTACACGCATCTATAA---------AGCTACACAGAAAAA-ATGCATCCAGA--AAGTAGTTAGAAT-TCTAG------------------------------GTGATCAA----GAAGATAAA----TCCTATGGCTTC----ATTAAAACATCCCCTAAGTT-G--------------------------------TATTTTTATACAACTGGTTTT-------ACCTC------TAGGTA-----------------AC--------A-ATTTTAATGATCT
droEle1 scf7180000490454:79253-79496 + TAC-----------ATCATCCCTGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATATC---------------------CCATTAGATCAACACGAA-CACACAT------------------------------CGCGGTTTAAAGTTCAC--TCGG---------------------------TTTCAGTT-------------------TCTAACTGGTTTACACGCATCTATTTATGT-----AGTTACACAGAGAAA-ATAAAA-TG--------------------TATG-TTCACTTAA-------------------GTGATCTT----GAGAATTC-----TTCTATGGCCTC----TATAAAACATCTC-TAGG-------------------------------------------------------------------------------------TTCGATTTTT-----------------TGTACAGATAC
droRho1 scf7180000779917:385588-385820 + TTC-----------ATCATCCCTGGGGGGGCAAATTCAAATATTTAACGTTCTTGGATGCGGTAATATC---------------------CCATTAAAT--ACACGAA-CAC--A-------------------------------CAAGGCTTAAAGTTCAC--TCGG---------------------------TTT--GTTTCTTTGAACTGTTGAACTGTCTAACTGGTTTACACGCATCTATTA---------AGCCACACAGAGAAA-ATAGAT-GAGAAAAAGCGGTTATAAG-TTTGGAGTTCAATTCA-------------------GTGATA-A----GAGGATAT-----TTCCATGGCCTC-------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453904:558879-559144 - TCC-----------ACCACCCCTGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCAC---------------------CCACAAGAT--ACACGAA-CCC--CC----------CAT------TA----GATTCAGCGGTTTAAAGTTTAC--TCGA---------------------------TAC--GTTC-TTGGCACGGTTGGATTGCTTAACTGGTTTACACGCATCTACTG---------GGCTACACTGAGAAG-A---------------------GAAT-TTTAGGTTTT-------------------------------AA----GAGAATGC-----TACTGTGGCTTC----TATAAAACACCCCCTAGATT--------------------------------------------------------------------------------------GGTTTCTGAA-AACCATATAGCTTCCTATATGCCT
droKik1 scf7180000302401:607531-607628 - TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCAATAG---------------CTTAC-----AA--CTGGGGA-GGC--TT-----------------------------CTGGGGTTTAAAGTTCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12943:4989338-4989451 + TGC-----------ACCACCCATGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCTT--T---------------CCCTCATTAGAT--ACACGACACATATA-------------------CTATGTAACGGCCGGGGTTTAAAGTTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395654:52780-53082 - TGC-----------ACCACCCATGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCTT--T---------------CACTCATTAGAT--ACACGAA-CATATAC-------------------TATGTAACTG-TCGGGTTTAAAGTTCAAAATCAGTCTGTGTTGTTGTTGTTATTTTTATTCTTC--GTTT-ATGTCACGCTTCGTTTGTCTAACTGGTTTATACGCATCTATT------------CCACACTGAGATA------------------------------------------------------------------------------------------------------------AAATATCTC-ACGGGTCGGGTCGTTAATCTTTGACAGTGATTAGTGGAAA-----------CA-------TGCTTCCAAACTTGCGGGA----AATAAGTTAC----------A--------TTTTTAAAAGCATAT
dp5 4_group1:4299720-4299825 + TAC-----------ATCATCCGTTTGGTGGGAAGTTTAAATATCTAACATTTTTGGATGCGGTAAGAC--------------------------------------AA-CAC--AGAGCATCATCCCATGAATACTA----ATTACGGTGGTTTAAAGTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_5:910777-910882 - TTC-----------ATCATCCGTTTGGTGGGAAGTTTAAATATCTAACATTTTTGGATGCGGTAAGAC--------------------------------------AA-CAC--AGAGCATCATCCCATGAATACTA----ATTACGGTGGTTTAAAGTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004521:5660772-5660825 - TGC-----------ATCATCCGTTTGGAGGAAAATTCAAATATCTAACTTTTTTGGATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:8796825-8796878 + TAC-----------ACCATCCGTTTGGGGGAAAATTTAAATATCTTACCTTCCTGGATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:2530165-2530218 - TCT-----------ATCATCCCTTTGGTGGAAAGTTCAAATATCTTACGTTTCTGAATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:12990184-12990248 - TGCAAAGATAATTTATCATCCGTTTGGTGGCAAATTCAAATATCTTACATTTCTAGATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATATCCAT---------------CTGCCATTAGAA--TCACGAA-CGC--AG------------------------------CGCGGTTTAAAGTTCAC--TCTG---------------------------ATT--GT------------------------ACTTGTACGAACGCATCTATTA---------AGATGCACAGAGAAA-ATGAAT-AGGA--CAGTGGTTAGAAT-CATGGGATTTTCTTGA-------------------GTGACGAAGA-GAAGGATTT-----ATCAAGGGCTCCAGTGTATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCTTTTTGAAGATCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................ACAGAGAAA-ATGAAT-AGGA--CA.....................................................................................................................................................................................................................................2112.00202000000000000000
.................................ATTCAAATACCTAACGTTCCTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020000000000000
...........................................CTAACGTTCCTGGATGCGGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
.....................................................................................................................................................................................................................................................................................................................................................GAAGA-GAAGGATTT-----ATCAAGGGC....................................................................................................................................................2312.00202000000000000000
.........................................................................................................................................................................................................................................................................................................................TTGA-------------------GTGACGAAGA-GAAGGAT....................................................................................................................................................................2112.00201001000000000000
......................................................................................................................................................................CTG---------------------------ATT--GT------------------------ACTTGTACGA.........................................................................................................................................................................................................................................................................................1811.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................CGAAGA-GAAGGATTT-----ATCAAGGGCT...................................................................................................................................................2511.00101000000000000000
.........................................................................................................................................................TAAAGTTCAC--TCTG---------------------------ATT--G............................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...................................................................................................................................................................................................................................................................................................GGTTAGAAT-CATGGGATT................................................................................................................................................................................................................1811.00100001000000000000
.....................................................................CAT---------------CTGCCATTAGAA--TCACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
........................................................................................................................................................TTAAAGTTCAC--TCTG---------------------------ATT--GT------------------------ACTT...............................................................................................................................................................................................................................................................................................2411.00100010000000000000
...............................................................................................................................................................TCAC--TCTG---------------------------ATT--GT------------------------ACTTGTAC...........................................................................................................................................................................................................................................................................................2111.00101000000000000000
..................................TTCAAATACCTAACGTTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.............................................................................................................................................................GTTCAC--TCTG---------------------------ATT--GT------------------------ACTTGTAC...........................................................................................................................................................................................................................................................................................2311.00100010000000000000
..............................CAAATTCAAATACCTAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................GAAGA-GAAGGATTT-----ATCAAGGGCTCC.................................................................................................................................................2611.00101000000000000000
..C-----------ATCATCCCTGGGGGGGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
.....................CTGGGGGGGCAAATTCAAATAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
..........................................................................................................................................................................................................T------------------------ACTTGTACGAACGCATCTAT...............................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................................TTCTTGA-------------------GTGACGAAGA-GAAGGATT...................................................................................................................................................................2511.00100010000000000000
...............................AAATTCAAATACCTAACGTTCCTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...................................TCAAATACCTAACGTTCCTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
................................................................................................................................................................................................................................................................................A-ATGAAT-AGGA--CAGTGGTTAGA............................................................................................................................................................................................................................2211.00100010000000000000
......................................................................................................................................................................................................................................................................GCACAGAGAAA-ATGAAT-AGGA--CAG....................................................................................................................................................................................................................................2411.00101000000000000000
...........................................................................................CATTAGAA--TCACGAA-CGC--AG------------------------------C...................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...............................................................................................................C--AG------------------------------CGCGGTTTAAAGTTCAC--T................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................AGGA--CAGTGGTTAGAAT-CATGGG...................................................................................................................................................................................................................2311.00100000000000100000
..C-----------ATCATCCCTGGGGGGGCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................AGA-GAAGGATTT-----ATCAAGGGCG...................................................................................................................................................2211.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CAGTGTATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCC............2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................A-GAAGGATTT-----ATCAAGGGCTC..................................................................................................................................................2111.00101000000000000000
......................................AATACCTAACGTTCCTGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................CCTGGATGCGGTAATATCCAT---------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
.........................................................................................................................................................................................................................................................................CAGAGAAA-ATGAAT-AGGA--CA.....................................................................................................................................................................................................................................2011.00100001000000000000
.....................................AAATACCTAACGTTCCTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.......................................ATACCTAACGTTCCTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..................................TTCAAATACCTAACGTTCCTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
....................................CAAATACCTAACGTTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..................................................................................................................AG------------------------------CGCGGTTTAAAGTTCGT--.................................................................................................................................................................................................................................................................................................................................................................1940.25100000000000100000
droSec2
TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATATCCAT---------------CTGCCATTAGAA--TCACGAA-CGC--AG------------------------------CGCGGTTTAAAGTTCAC--TCTG---------------------------ATT--GTT-----------------------ACTTGTACGAACGCATATATTA---------AGATACACAGAAAAAAATGAAT-AGGA--CAGTGGTTAGAAT-CATGGGATTTTCTTGA-------------------GTGATGAAGA-GATGGATTT-----ATGAAGGGCTCCAGTGTATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCTTTTTGAAGATCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................AA--TCACGAA-CGC--AG------------------------------CGCGGTT.............................................................................................................................................................................................................................................................................................................................................................................2121.0020200
..............................................................................................................................................................................................................................................................................................................ATGGGATTTTCTTGA-------------------GTGATG................................................................................................................................................................................2121.0021100
........................................TACCTAACGTTCCTGGATGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020200
............................................TAACGTTCCTGGATGCGGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100
.....................................................................................................................................................................................................................................................................................AAT-AGGA--CAGTGGTTAGA............................................................................................................................................................................................................................1820.5010001
......................................................................................................................................................................................................................................................................................AT-AGGA--CAGTGGTTAGAAT-CATGGGA..................................................................................................................................................................................................................2620.5010100
..............................................................................................................................................................................................................................................................................................................................................................GGATTT-----ATGAAGGGCTCCAG...............................................................................................................................................2020.5011000
.................................ATTCAAATACCTAACGTTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000
.......................................................................................................................................................................................................................................................................................................................TCTTGA-------------------GTGATGAAGA-GATGG......................................................................................................................................................................2120.5010100
...........................................................................................................................................................................................................................................................................GAAAAAAATGAAT-AGGA--C......................................................................................................................................................................................................................................1820.5011000
......................................................................................................................................................................................................................................................................................................................................................AAGA-GATGGATTT-----ATGAAGGG.....................................................................................................................................................2120.5010100
................................................................................................................................................................................................................................................................................................AGTGGTTAGAAT-CATGGGATT................................................................................................................................................................................................................2120.5010100
.......................................................................................................................................................................................................................................................................................................................................................AGA-GATGGATTT-----ATGAAGGGC....................................................................................................................................................2120.5010100
.........................................................................................................................................................................................................................................................................................................................TTGA-------------------GTGATGAAGA-GATGGAT....................................................................................................................................................................2120.5010001
....................................................................................................................................................................................................................................................................................................GTTAGAAT-CATGGGATTTTCTT...........................................................................................................................................................................................................2220.5011000
..........................................................................................................................................................................................................................................................................................................................................................................TGAAGGGCTCCAGTGTATAAA-----------------------------------------------------------------------------------------------........................................2120.5010100
....................................................................................................................................................................................................................................................................................................................................................TGAAGA-GATGGATTT-----ATGAAG.......................................................................................................................................................2120.5010100
..C-----------ATCATCCCTGGGGGGGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5011000
...........................................................................................CATTAGAA--TCACGAA-CGC--AG------------------------------C...................................................................................................................................................................................................................................................................................................................................................................................2120.5010100
...............................................................................................................................................................................................................................................................................................................................................................GATTT-----ATGAAGGGCTCCAGTGT............................................................................................................................................2220.5010100
...................................................................................................................................................................................................................................................................................................................................................................T-----ATGAAGGGCTCCAGTGTA...........................................................................................................................................1920.5010001
...........................................................................................................................................................................................................................................................................................................................................................GATGGATTT-----ATGAAGGGCTCC.................................................................................................................................................2120.5010100
.....................................................................................................................................................................................................TT--GTT-----------------------ACTTGTACGAACGCAT...................................................................................................................................................................................................................................................................................2120.5010100
..................................................................................................A--TCACGAA-CGC--AG------------------------------CGCGGTTT............................................................................................................................................................................................................................................................................................................................................................................2120.5010100
.............................................................................................................................................................................................................................................................................AAAAAATGAAT-AGGA--CAGTGG.................................................................................................................................................................................................................................2120.5010100
........................................................................................................................................................................................................................................................................................................................CTTGA-------------------GTGATGAAGA-GATGGA.....................................................................................................................................................................2120.5010100
...................................................................................................................................................................................................................................................................................................GGTTAGAAT-CATGGGATTTTC.............................................................................................................................................................................................................2120.5011000
................................................................................................................................................................................................................................................................................AAATGAAT-AGGA--CAGTGGTTA..............................................................................................................................................................................................................................2120.5010100
dm3
TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATATCCAT---------------CTCCCATTAGAA--TCACGAA-CGC--AG------------------------------CGTGGTTTAAAGTTCAC--TCCG---------------------------ATT--GTT-----------------------ACTTGTACGCACGCATCTATTA---------AGATACACAGAGAAA-ATGAAT-AGGA--CAGTAGTTAGAAT-CATGGGCTTTTCTTGA-------------------GTGATGAA----GAGGATTT-----GTCAAGGTCTCCAGTGTATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCTTTTTGAAGATCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................T-AGGA--CAGTAGTTAGAAT-CATGGGC..................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000
.......................................................................................................................................................................................................................................................................................................................TCTTGA-------------------GTGATGAA----GAGGATTT-----GT...........................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000
................CATCCCTGGGGGGGCAAATTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AGAGAAA-ATGAAT-AGGA--CAGTAGT................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................................................................................................................................................TTGA-------------------GTGATGAA----GAGGATTT-----GT...........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AGTTAGAAT-CATGGGCTT................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TT-----GTCAAGGTCTCCAGTGTAT..........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AG------------------------------CGTGGTTTAAAGTTCGA--.................................................................................................................................................................................................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATAAA-----------------------------------------------------------------------------------------------AGTTAG----------A--------GCTTTTTGA......2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATTCAAATACCTAACGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTTCTTGA-------------------GTGATGAA----GAGGAA....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................................................................................................................................................................................................................................................................TACACAGAGAAA-ATGAAT-AGGA--CAGT...................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................ATACCTAACGTTCCTGGATGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.CC-----------ATCATCCCTGGGGGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GCTTTTCTTGA-------------------GTGATGAA----GAGGA.....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................CAAATACCTAACGTTCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATCCCTGGGGGGGCAAATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................AAT-AGGA--CAGTAGTTAGAAT-C........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GA-------------------GTGATGAA----GAGGATTC-----.............................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTTTCTTGA-------------------GTGATGAA----GT........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GA-------------------GTGATGAA----GAGGATTT-----GTC..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AT-AGGA--CAGTAGTTAGAA...........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTTTCTTGA-------------------GTGATGAA----GAGG......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AATACCTAACGTTCCTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATCTCCAC---------------CTCCCATTAGAA--ACGCGAA-CGC--AG------------------------------CGCGGCTTCAAGTTCAC--TCTG---------------------------ATT--GT-----------------------------TTTGCACGCATCTATTA---------AGATACACAGAGAAA-ATGAGT-AGGG--TATTAGTTAGAAT-CATCGGCTTTTCTTGA-------------------GTGATGAAGA-GAGGGATAT-----ATCTATGGGTACCGTGTATAAAATACCC--GAAG-------------------------------------------------------------------------------------CAATAGCTCCAGAAA--------GCTTTCGGAAGATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAA--------GCTTTCGGAAGATTT2111.0010000010
..............ATCATCCCTGGGGGGGCAAATTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
........................................TACCTAACGTTCCTGGATGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATACCTTACGTTCCTGGATGCGGTAATCTCCAT---CTCCATCCCCACCTTCCATTAGAA--ACACGAA-CGC--GG------------------------------CGCGGCTTAAAGTTCAC--TCTG---------------------------ATT--GT-----------------------------CGTGCACGCATCTATTAAGATGAATAAGATACACATAGAAA-ATGAGT-AGGA--TATTAGTTGCAAA-GATGGGCTTTTCGTGA-------------------GTGATGAAGG-AAAGGTTAC-CCATATCTAGTA---CCGTGTATAAAATACCCA-GGA-------------------------------------------------------------------------------------GTCAGAACTCCTGAAC--------G-TTTTTTAAGATCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................TTTCGTGA-------------------GTGATGAAGG-AAA........................................................................................................................................................................2112.00201000010000
.......................................ATACCTTACGTTCCTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00211000000000
......................................................................................................................................................................................................................................................................................................TGCAAA-GATGGGCTTTTCGTGA-------------------GT....................................................................................................................................................................................2411.00100000010000
..................................................................................................A--ACACGAA-CGC--GG------------------------------CGCGGCTTAAAGTT......................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..................................................................................................................................................................................................................................................................................................................................................GATGAAGG-AAAGGTTAC-CCAT.............................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................................................TGGGCTTTTCGTGA-------------------GTGATG................................................................................................................................................................................2011.00101000000000
...............................AAATTCAAATACCTTACGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................GCGGCTTAAAGTTCAC--TCTG---------------------------ATT--GT-----------------------------C.............................................................................................................................................................................................................................................................................................2611.00110000000000
....................................................................................................................................................................................................................................................................................................GTTGCAAA-GATGGGCTTTTCGTGA-------------------GTGAT.................................................................................................................................................................................2911.00100000010000
................................AATTCAAATACCTTACGTTCCTGGATGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
....................................................................................................................................................................................................................................................................................................GTTGCAAA-GATGGGCTTTTCGTGA-------------------GTGA..................................................................................................................................................................................2811.00100000010000
..C-----------ATCATCCCTGGGGGGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................CCATTAGAA--ACACGAA-CGC--GG------------------------------....................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................................................................................................................................................ATACACATAGAAA-ATGAGT-AGGA--.......................................................................................................................................................................................................................................2311.00100000010000
................................................................................................................................................................................................................................................................................................................................................GTGATGAAGG-AAAGGTTAC-CCAT.............................................................................................................................................................2311.00100000010000
..............ATCATCCCTGGGGGGGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
droEug1
TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATATTTAACGTTCCTGGATGCGGTAATCTCCAA---------------CTTTCATTAGAA--ACACGAA-CATATAA------------------------------CGTTGTTTAAAGGTCAC--TCGG---------------------------TTC--GCAT-CTTGTAGGGTTGAAATCTCTAACTGGT-TACATGCATCTATTA---------AACTACACAGAGAAA-ATGCACCAGGA--AGGTGGTTGAAAT-TATAGGCTTCACCTAC-------------------ATAAGAAATATGTAGGATAT-----TCCTATGCCTTCTG----TTGTCTATG--------------------------------------------------------------------------------------TATCAGTTTC----------A--------ATTTCATATAGGCATSizeHit CountTotal NormTotal
No Reads
droBia1
TCC-----------ACCATCCCTGGGGGGGCAAATTTAAATATCTAACGTTCCTGGATGCGGTAATCTCCAT---------------CTCCCATTAGAC--ACACGAA-CCCAGAG------------------------------AGCGG-TTAAAGTTCAC--TCGG---------------------------TTT--GTTT-TTGGCACGGTTGGATTGCCTAACTGGTTTACACGCATCCATTA---------AGCTACACAGAGAAA-ATGCAT-CCAG--AAGTGGCTAGAATTCATAGAGATATCTTCCGGATCACATAAAGGGGGATGTGATCCA----AAAGATAT-----TTCTATGGCTTC----TATAAAGCATCCCCTAAGTT--------------------------------------------------------------------------------------GATTTTCAAA-T--------ACTTTTCTAAGATCTSizeHit CountTotal NormTotal
No Reads
droTak1
TCC-----------ACCATCCCTGGGGGGGCAAATTCAAATACCTAACGTTCCTGGATGCGGTAATCTA--TCTATTCTGTCTACATCTCCCATTAGAT--ACACG----------------------------------------CGCGGTTTAAAGTTCAC--TCGG---------------------------TTC--GTTTATTGGCACGGTTGGATTGCCTAACTGGTTTACACGCATCTATAA---------AGCTACACAGAAAAA-ATGCATCCAGA--AAGTAGTTAGAAT-TCTAG------------------------------GTGATCAA----GAAGATAAA----TCCTATGGCTTC----ATTAAAACATCCCCTAAGTT-G--------------------------------TATTTTTATACAACTGGTTTT-------ACCTC------TAGGTA-----------------AC--------A-ATTTTAATGATCTSizeHit CountTotal NormTotal
No Reads
droEle1
TAC-----------ATCATCCCTGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATATC---------------------CCATTAGATCAACACGAA-CACACAT------------------------------CGCGGTTTAAAGTTCAC--TCGG---------------------------TTTCAGTT-------------------TCTAACTGGTTTACACGCATCTATTTATGT-----AGTTACACAGAGAAA-ATAAAA-TG--------------------TATG-TTCACTTAA-------------------GTGATCTT----GAGAATTC-----TTCTATGGCCTC----TATAAAACATCTC-TAGG-------------------------------------------------------------------------------------TTCGATTTTT-----------------TGTACAGATACSizeHit CountTotal NormTotal
No Reads
droRho1
TTC-----------ATCATCCCTGGGGGGGCAAATTCAAATATTTAACGTTCTTGGATGCGGTAATATC---------------------CCATTAAAT--ACACGAA-CAC--A-------------------------------CAAGGCTTAAAGTTCAC--TCGG---------------------------TTT--GTTTCTTTGAACTGTTGAACTGTCTAACTGGTTTACACGCATCTATTA---------AGCCACACAGAGAAA-ATAGAT-GAGAAAAAGCGGTTATAAG-TTTGGAGTTCAATTCA-------------------GTGATA-A----GAGGATAT-----TTCCATGGCCTC-------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCC-----------ACCACCCCTGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCAC---------------------CCACAAGAT--ACACGAA-CCC--CC----------CAT------TA----GATTCAGCGGTTTAAAGTTTAC--TCGA---------------------------TAC--GTTC-TTGGCACGGTTGGATTGCTTAACTGGTTTACACGCATCTACTG---------GGCTACACTGAGAAG-A---------------------GAAT-TTTAGGTTTT-------------------------------AA----GAGAATGC-----TACTGTGGCTTC----TATAAAACACCCCCTAGATT--------------------------------------------------------------------------------------GGTTTCTGAA-AACCATATAGCTTCCTATATGCCTSizeHit CountTotal NormTotal
No Reads
droKik1
TCC-----------ATCATCCCTGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCAATAG---------------CTTAC-----AA--CTGGGGA-GGC--TT-----------------------------CTGGGGTTTAAAGTTCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGC-----------ACCACCCATGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCTT--T---------------CCCTCATTAGAT--ACACGACACATATA-------------------CTATGTAACGGCCGGGGTTTAAAGTTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................ATATCTAACGTTCCTGGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
....................................CAAATATCTAACGTTCCTGGATGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
TGC-----------ACCACCCATGGGGGGGCAAATTCAAATATCTAACGTTCCTGGATGCGGTAATCTT--T---------------CACTCATTAGAT--ACACGAA-CATATAC-------------------TATGTAACTG-TCGGGTTTAAAGTTCAAAATCAGTCTGTGTTGTTGTTGTTATTTTTATTCTTC--GTTT-ATGTCACGCTTCGTTTGTCTAACTGGTTTATACGCATCTATT------------CCACACTGAGATA------------------------------------------------------------------------------------------------------------AAATATCTC-ACGGGTCGGGTCGTTAATCTTTGACAGTGATTAGTGGAAA-----------CA-------TGCTTCCAAACTTGCGGGA----AATAAGTTAC----------A--------TTTTTAAAAGCATATSizeHit CountTotal NormTotal
No Reads
dp5
TAC-----------ATCATCCGTTTGGTGGGAAGTTTAAATATCTAACATTTTTGGATGCGGTAAGAC--------------------------------------AA-CAC--AGAGCATCATCCCATGAATACTA----ATTACGGTGGTTTAAAGTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................GTTTGGTGGGAAGTTTAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
TTC-----------ATCATCCGTTTGGTGGGAAGTTTAAATATCTAACATTTTTGGATGCGGTAAGAC--------------------------------------AA-CAC--AGAGCATCATCCCATGAATACTA----ATTACGGTGGTTTAAAGTTCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGC-----------ATCATCCGTTTGGAGGAAAATTCAAATATCTAACTTTTTTGGATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..C-----------ATCATCCGTTTGGAGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000
.................ATCCGTTTGGAGGAAAATTCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..........................................TCTAACTTTTTTGGATGCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
droVir3
TAC-----------ACCATCCGTTTGGGGGAAAATTTAAATATCTTACCTTCCTGGATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
TAC-----------ACCATCCGTTTGGGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
TCT-----------ATCATCCCTTTGGTGGAAAGTTCAAATATCTTACGTTTCTGAATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.CT-----------ATCATCCCTTTGGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................TTGGTGGAAAGTTCAAATATCTTACGTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.CT-----------ATCATCCCTTTGGTGGAAAGTTCAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droGri2
TGCAAAGATAATTTATCATCCGTTTGGTGGCAAATTCAAATATCTTACATTTCTAGATGCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:28 AM