ID:

dsi_12359

 Coordinate:

2l:4939057-4939241 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCTAATGATAATTATCTATAAACATTCCATTTCGATCACCTATAAATAATCCTCTCATTACCCATCACGCATGCCCTGAAGCTGAGGGAGCTAGTGGTAACTAATATGCTTTTATATATCACCTATGTGTACTTCAATTTGAAAAACCCATGTCTAACTTATTAATCTTATCTTATAACAGAAAATCTGTCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
**************************************************(((((.((((((..(((((.((((.....((......)).....)))).)))))....))))))(((.(((.((..........)))))))).....((((((..(((.......)))..)))))).((((.((..((((...))))..)).))))...................))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................................................................................GACAACAAACGCGAGGAC.............. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................AGAAGGTGGTTTTCCCGGAA........................................................................................................................................................................................................................................ 20 3 10 1.30 13 0 0 0 13 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CCAGAAAATCTGTCAAGATGC................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................TCTGCCAGGATGCTGACAACAAACGCGA.................. 28 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................CCAGAAAATCTGTCAAGATGCTG............................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........AATACCATGGAGGAATTCGAAAAGGAG.......................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................ATTCGAAAAGGAGAGGGTG.................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................AGAAAATCTGTCAAGATGCT................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................AAGAATTCGAAAAGGAGAAG....................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................AACAAGCGCGAGGACATGAAATGGT.... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................................CAAGATGCTGACAACAAACGCGAGGA............... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CAAGATGTTGACAACAAACGCGAGGAC.............. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAATGGTTGGT 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................AAACGCGAGGACATGAAAT....... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................AGAAGGTGGTTTTCCCGGAAA....................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................GCATTACCTGACGCTGAGG................................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................ATATCTGTAAAGATGCTG............................... 18 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................GCATGACCTGACGCTGAGT................................................................................................................................................ 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TCTGTGAAGATGCGGAC............................. 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................ATCTGTGAAGATGCGGA.............................. 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................TGTAGTTCAATTCGAAAA...................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................ACCTCTGTGTACCTCATTT............................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGCTTCAATTATGGTACCTCCTTAAGCTTTTCCTCTTCCACCAGAAGGTCCATTCGATTACTATTAATAGATATTTGTAAGGTAAAGCTAGTGGATATTTATTAGGAGAGTAATGGGTAGTGCGTACGGGACTTCGACTCCCTCGATCACCATTGATTATACGAAAATATATAGTGGATACACATGAAGTTAAACTTTTTGGGTACAGATTGAATAATTAGAATAGAATATTGTCTTTTAGACAGTTCTACGACTGTTGTTTGCGCTCCTGTACTTTACCAACCA
**************************************************(((((.((((((..(((((.((((.....((......)).....)))).)))))....))))))(((.(((.((..........)))))))).....((((((..(((.......)))..)))))).((((.((..((((...))))..)).))))...................))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.......................AAGCTTTTCCTCTTGCACC................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................TTGTAAGGTAAAGCTAGTGGATATTTA........................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TACGACTGTTGATTCCGCTCCC............... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTGGGTACAGGTTGACTA..................................................................... 18 2 10 0.50 5 0 0 5 0 0 0 0 0 0
..............................................................................................................................CGCGACTTCGAGTCCCACGAT.......................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................GACAGTTCTAAGACT.............................. 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0
...................................................................................................................GGTAGTGCGAACAGGAATT....................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0
...................................TTCCACCAGAAGGTTAATTT...................................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................CGACTGTTGTGTGCG.................... 15 1 17 0.06 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CTGATTGGGTACAGGTTGA........................................................................ 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0
..........................................AGAAGGTCGACTCGATTCC................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................ACGACTGTTGTGTGCGTTA................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
TGCTTCAATTTTGGCACGT.......................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................CTGATTGGGTGCAGATTG......................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:4939007-4939291 + dsi_12359 ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCTAA-------------TGATA-AT---TAT--CTATAAACATTCCATTT-CGATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATAT--A--------TCAC-----------------------------------------------------CTATGTGTACTTCA-ATTTGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-C------------------C--CATGT--CTAACTT-----ATTAATC-TT--ATCTTATAACAGAAAATCTGTCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
droSec2 scaffold_5:3212190-3212474 + ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCTAA-------------TAATA-AT---GAT--CTATAAACATTCCATTT-CGATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATAT--A--------TCAC-----------------------------------------------------CTATGTGTACTTCA-ATTTGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-T------------------C--CATGG--CTAATTT-----ATTGTTC-TT--ATCTTATGATAGAAAATCTGCCAGGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
dm3 chr2L:5125573-5125877 + ACGAAGTGAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTGAGCTAG-------------TAATA-AT---GAT--CTATAAACATTCCATTT-CGATCACCTATAAATAATAAA-------TAAAT--AAAT--A----A-TCCTCTCATTACC---------------CAT---CATGCATTGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTC-TATATATA--------TCTC-----------------------------------------------------CTATGTTTATTTCAATTTTTTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-G------------------C--CATGG--CTAATTA-----ATTATTAATT--ATCTTAAAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
droEre2 scaffold_4929:5206681-5206964 + ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTTGTTTTCCAGGTGAGCTCA-------------TTATA-AT---GAT--CTATAAACATTCCATTT-CAATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATAT--C--------TTAC-----------------------------------------------------CAATGTGTACTTCA-TTTTGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-G------------------C--CATGG--CTAATTT-----ATTATTT-GT--ATCTTATAACAGAAAATCTGCCAGGACGCTGACAACAAACGCGAGGACATGAAGTGGCTGGT
droYak3 2L:10398445-10398726 - ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTCGTTTTCCAGGTGAGCACA-------------TTTAA-AT---AAT--CCATAAACATGCCATTT-CCATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATTT--A--------TTAC-----------------------------------------------------CGATG--TACTTCA-TTTTTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-A------------------C--CATGG--CTAATTT-----ACTGTTC-TT--ACCTTTTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGT
droEug1 scf7180000409005:1014846-1015134 + ATGAAGTGAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGATTC-------------AAAGA-ATTTTT--TCCTTTAAGCTTTCCATTT-CAATCATCTTTAA-----------------------AAT--A----A-TATTCTCATTACCC--------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTT--A--------TAAC------------------------------------------------------TATTTTTAATATT-ATTAAA-----------------------------------------------------------------------CT-----------------------------------------------------------------------------------------A-TA-A------------------C--CTTAA--CTAATTA-----AACATTC-TT--TAATTGCAACAGAAAATCTGCCAAGATGCTGACAATAAACGCGAGGATATGAAATGGCTGGT
droBia1 scf7180000302261:567818-568176 + ATGAAGTCAATACCATGGAGGAATTCGAGAAGGAGAAGGTCGTCTTCCAGGTGAGATTT-------------ATAGA-ATAGCT--TTGCTTAAGCTGCCCATCT-GAATCATTCCTA------------------------AAT--A----A-TCTTCTCATTACCC--------------CAT---CATGCA-TGCCTA-AAGCTAAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTA--T--TT-----------------AATATCACGATGATGCCC-TTGCCTTT-CTTTAAAAGTTC------------------------------------------------------------------------------------------ACTA------AATACCTATTAAGAG-AGAGCACATAGGCATCTGGCATCACA-----------TAACTAT------------------------TCGGTA-AC------------------C--CCTTA--CTTATAA-----AATTTAT-TT--TATTTATAACAGAAAATCTGCCAGGATGCTGACAACAAGCGCGAGGATATGAAATGGCTGGT
droTak1 scf7180000415704:400092-400371 - ATGAGGTCAATACCATGGAGGAATTCGAGAAGGAGAAAGTCGTGTTCCAGGTGAGCTAC-------------TCAGA-ATATCT--TCTTGTAAGCCTTCCATTT-CAATCATCCCTA------------------------AAT--A----A-TATTCTCATTACCC--------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TACAT--A--------GAATC--------------------------------------------------------------TTCA-CTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-AC------------------C--TAATA--CTAATTA-----AATGTTT-CTCCTTTTTGCAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGTTGGT
droEle1 scf7180000491273:89016-89341 - ATGAAGTTAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCTAA-------------GCAAAAATAAAC--TTCTTTATGCTATCCATTT-CAATCATACCTA------------------------AAT--A----A-TCTTCTCATTACC---------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--A--------AAATTAACTATC-----------TGATGCCAACTGTCTTTTC------------TTA-----------------------------------------AAACAAAGATTTGTTTGGCATGATCT---------------------------------------------------------------------------T-T-------------------------------------TGCA-AC------------------C---TTTA--TTAATAA-----AATTAAT-TT--TTTTTGTAACAGAAAATCTGCCAAGATGCCGACAACAAACGGGAGGATATGAAATGGCTGGT
droRho1 scf7180000779577:92010-92368 - ATGAAGTTAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGTTAA-------------ACAAACATAT-----GTTTTCACCTTTCCATTT-CGCTCATCCCTA------------------------AAT--A----A-TCTTCTCATTACC---------------TAT---CACGCA-TGCATT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--A--------GAATCAAATATCTAATACCGCTGTGATGCCAACTGC-TTTTC------------TTA-----------------------------------------AA--------------------------------------TTAACATTTAATTATAATAACAG-----A-ATGAGCACA-------CTGGCATCACAGTTAATT-------------------------------------TCTA-AG------------------C--CCATA--CTAATTA-----AATATTA-TT--TATTTGTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGT
droFic1 scf7180000453842:1114783-1115135 - ATGAAGTGAACACCATGGAGGAATTCGAAAAGGAGAAAGTTGTCTTCCAGGTGAGCTGC-------------ATAAA-TTATAT--TTAATTAAGCTTTCCATTT-CATTCATCCCTA------------------------AAT--A----A-TCTTCTCATTACC---------------CAT---CATGCA-TGCAAA-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGATAT-TATAT--A--------GAATCTATAATCACT---------------C-TTCACTGT-GTTGTAAACTTCCTTA-----------------------------------------AGACAGATATTACTT---------------------------------------------CTGTGTGAA-ATAAGTTTA-------CTGGCAGCACAGTTCC-T-------------------------------------TGTA-AC------------------C--CAAAA--CTAATTC-----ATTATTA-T---TTTTTACAATAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGT
droKik1 scf7180000302643:736456-736845 - ACGAAGTAAACACTATGGAGGAGTTTGAAAAGGAGAAGGTTGTCTTCCAGGTGAGTTTT-------------CTAAA-TTAATT--AGGTTCAAGTCCTCCATTT-CAATCATCGTGA-A---------------------AAAT--A----A-TCCTCTCATTAAC---------------CCTTCACACGCA-TGCCTTCAAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--GTTTAGATATT---T----TATAGTTCCGCAGTGATGCCATC-------------------------AATATATA--------------------------------------------------TATAATCTTTGCAATTGTTTTATTAAAATC----TATAATATCCGTAAAAAT-AAAAACCA-------ATGGCATCCCTGCTGTCTCCCAAAACATC------------------------TTAGTA-AC------------------T--CCCTT--TAC--------------CT-TT--ATTTTTAAACAGAAAATCTGCCAAGATGCGGACAACAAACGTGAAGATATGAAATGGCTTGT
droAna3 scaffold_12916:10036193-10036508 - ATGAAGTAAACACCATGGAAGAATTCGAGAAGGAGAAGGTGGTCTTCCAGGTGAGTTCA------AGA----TCAGAAATC-AT--TATTTTAAACTTTGCATCCACAATCATCCTGA------------------------AAT--A----A-TCTTCTCATTAAT---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-ACAAT--T--TC------C-------------------------------------------------------------------A-CTTTTTAAAAGCCAATGTTCTTTTAA------------------------------------------------------------------------------------------------------------------AAAGCTACCTCCTGGATTTTAAATTTCAC-------------------------------------TAA-AATAAAT--TT-AT--ATTTTTCTTTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGATATGAAGTGGCTGGT
droBip1 scf7180000396580:997290-997604 + ATGAAGTAAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCTAA------AGT----CCAGAAACAA-----GTCCCAAACTTTTCATTCAAATTCATCCTGA------------------------AAT--A----A-TCTTCTCATTAAA---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--T--TC------AA-----------------------------------------------------CT---------------TTTCAAAGGACAATGTCCTATTAA------------------------------------------------------------------------------------------------------------------ATGGGCTACTCCTGGATTTTCAATCTCAC-------------------------------------TAACAATCCTT--TT-CC--ATTTTGCCCTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGACATGAAATGGCTGGT
dp5 4_group3:2777821-2778019 - ATGAAGTCAATACCATGGAGGAGTTTGAGAAGGAGAAGGTCGTCTTCCAGGTACGTTTTCC-----------TTAGA-AT---GAT---TACTAT-----CATCC-CTTTCATTCGTAAA---------------------ATAT--A----T-TCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT-CACAT--T--TAAATAGTAC-----------------------------------------------------CTACTCGTAGCACA-ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:4262749-4262948 - ATGAAGTCAATACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTCTTCCAGGTACGTTTTCC-----------TTAGA-ATA---AT---TACTAT-----CATCC-CTTTCATCCGTAAA-------A-------------ATAT--A----T-TCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT-CACAT--T--TAAATATTAC-----------------------------------------------------CTATTCGTAGCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT
droWil2 scf2_1100000004585:1156960-1157250 - ATGAGGTCAACACCATGGAGGAATTTGAGAAGGAGAAGGTTGTTTTCCAGGTAAGTCTTGCGTAAA-ATTAAAAAAATATAT-------------------AT-----------TAAA------------------------AAT--C----A-TCTATTCATTGAAACATCTTTTGTCATTTGT-CTACTGCA-TGC-----AGCTAAGGGAGCTAGTGGTAATTGAAA----ACGCTTT-TACAT--T--TA------ATTT---------------------------------------------------TAAAG---------------------CTTCTGATCTA-----------------------------------------------------------------------------------------------------------TAACAAACAAAAT------------------------AAGTA-AC------------------T--TATGC--TTAAT---------------TT--ATTTTCTCACAGAAAATCTGTCAAGATGCCGATAACAAACGAGAGGACATGAAATGGTTGGT
droVir3 scaffold_12963:6474736-6475013 - dvi_10658 ATGAGGTCAACAGCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTTGA------A------TGCTA-AT---CGC---------------------------CC-------CCAAAAAT----AGCTTGA-TAT--AAAAACTCCTTGCTAATATT---------------TGT---TACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAA----TTGCTTT-TGCTA--A--------TA---------------TAACAA----------------------------------ATACACATATTCCT-AAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-C------------------C--TA-----TTAATAACAAT-ATTGTT--------TTGTTCGCAGAAAATCTGCCAGGATGCAGATAACAAACGCGAGGACATGAAGTGGCTGGT
droMoj3 scaffold_6500:25620188-25620466 - dmo_1644 ACGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTTTTCCAGGTGAGTTCA------A------TGCTA-AT---CGA---------------------------TA-------ACAAA-------TGCCTG--AATATATATTTGACTTGCCGACATT---------------TAT---TCTGCT-TGCATG-CAGCTGAGGGAACTAGTGGTAAAAAAAA----TTGTTTTTTGCT---A----------------------------------------------------------------------------------------------------------AAATAA------------------------------------------------------------------------------------------------------------AT------------------------ATGTA-ATATATATTTATTTTCTGGATGAC--GGCACTAATCG-----AATATT-------TCTCATTGTAGAAAATCTGCCAGGATGCAGATAACAAACGTGAGGACATGAAGTGGCTGGT
droGri2 scaffold_15252:9702783-9702973 - ATGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTTAA------A------TGCTA-AT---CCC---------------------------TT-------AAAAAAACAGTCAGCTTCA-AAT--TATA-A-T-----CCCCATT---------------TAT---AACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAATTAATTGCTTT-TGCCT--A--------TCTA-----------------------------------------------------CTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATACTAGTCAATATG-----------------------A----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCTAA-------------TGATA-AT---TAT--CTATAAACATTCCATTT-CGATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATAT--A--------TCAC-----------------------------------------------------CTATGTGTACTTCA-ATTTGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-C------------------C--CATGT--CTAACTT-----ATTAATC-TT--ATCTTATAACAGAAAATCTGTCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAAACGCGAGGAC..............1812.00200200000000000000
........AATACCATGGAGGAATTCGAAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATCTGTCAAGATGCT................................2011.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGCTGACAACAAACGCGAGGA...............2611.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAATGGTTGGT2811.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCGAGGACATGAAAT.......1911.00100100000000000000
droSec2
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTAAGCTAA-------------TAATA-AT---GAT--CTATAAACATTCCATTT-CGATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATAT--A--------TCAC-----------------------------------------------------CTATGTGTACTTCA-ATTTGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-T------------------C--CATGG--CTAATTT-----ATTGTTC-TT--ATCTTATGATAGAAAATCTGCCAGGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................CGAAAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGACATGAAATGGTTGGT2511.0010010
.......TAATACCATGGAGGAATTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCTGCCAGGATGCT................................1911.0010001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAAACGCGAGGAC..............1811.0010010
.......TAATACCATGGAGGAATTCGAAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.....................AATTCGAAAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAGGATGCTGACAACA.........................2111.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCTGCCAGGATGCT................................1811.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAGGATGCTGACAACA.........................2011.0010010
dm3
ACGAAGTGAATACCATGGAGGAATTCGAAAAGGAGAAGGTGGTCTTCCAGGTGAGCTAG-------------TAATA-AT---GAT--CTATAAACATTCCATTT-CGATCACCTATAAATAATAAA-------TAAAT--AAAT--A----A-TCCTCTCATTACC---------------CAT---CATGCATTGCCCTGAAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTC-TATATATA--------TCTC-----------------------------------------------------CTATGTTTATTTCAATTTTTTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-G------------------C--CATGG--CTAATTA-----ATTATTAATT--ATCTTAAAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAACGCGAGGACATGAAAT.......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GAATTCGAAAAGGAGAAGGTGGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
...................GGAATTCGAAAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
....AGTGAATACCATGGAGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000
.........................CGAAAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........................CGAAAAGGAGAAGGTGGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGGAGGAATTCGAAAAGGAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAAGGAGAAGGTGGTCTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
.......................TTCGAAAAGGAGAAGGTGGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGAAATGGTTGGT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AAGTGAATACCATGGAGGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.CGAAGTGAATACCATGGAGGAATTCGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGAATTCGAAAAGGAGAAGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTCGAAAAGGAGAAGGTGGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCATGGAGGAATTCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TACCATGGAGGAATTCGAAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CATGGAGGAATTCGAAAAGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........TACCATGGAGGAATTCGAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAAGATGCTGACAACAA........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTCGAAAAGGAGAAGGTGGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................GAGGAATTCGAAAAGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAAAGGAGAAGGTGGTCTTCCAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAACAAACGCGAGGACAT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCATGGAGGAATTCGAAAAGGAGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAACGCGAGGACATGAA.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTCGAAAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....GTGAATACCATGGAGGAATTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAACAAACGCGAGGACATGA..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................AATTCGAAAAGGAGAAGGTGGTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAAT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGGAATTCGAAAAGGAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGACAACAAACGCGAGGAC..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGACATGAAATGGT....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCTGACAAC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGACAACAAACGCGAGGACA.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........TACCATGGAGGAATTCGAAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................AATTCGAAAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGACATGAAATGGTTGGT2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......GAATACCATGGAGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..GAAGTGAATACCATGGAGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAGATGCTGACAACA.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCATGGAGGAATTCGAAAAGGAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......GAATACCATGGAGGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............TGGAGGAATTCGAAAAGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGAAGGTGGTCTTCCAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AAGGAGAAGGTGGTCTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droEre2
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTTGTTTTCCAGGTGAGCTCA-------------TTATA-AT---GAT--CTATAAACATTCCATTT-CAATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATAT--C--------TTAC-----------------------------------------------------CAATGTGTACTTCA-TTTTGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-G------------------C--CATGG--CTAATTT-----ATTATTT-GT--ATCTTATAACAGAAAATCTGCCAGGACGCTGACAACAAACGCGAGGACATGAAGTGGCTGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............ATGGAGGAATTCGAAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0021000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGGACATGAAGTGGCT...2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAGTGGCT...2511.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGA..........1811.0010000010
......................ATTCGAAAAGGAGAAGGTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.............CATGGAGGAATTCGAAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
......TTAATACCATGGAGGAATTCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCTGCCAGGACGCTGA..............................2111.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATCTGCCAGGACGCTGA..............................2211.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAGGACGCTGACAACA.........................2111.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACGCGAGGACATGAAGTGGCC...2611.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGCCAGGACGCTGA..............................1911.0010000100
....AGTTAATACCATGGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010000
....AGTTAATACCATGGAGGAATTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGGACATGAAGTGGCTGGT2311.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGCTGACAACAAACGCGAGGAC..............2611.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCCAGGACGCTGACA............................1911.0011000000
..GAAGTTAATACCATGGAGGAATTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.........................CGAAAAGGAGAAGGTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
ACGAAGTTAATACCATGGAGGAATTCGAAAAGGAGAAGGTCGTTTTCCAGGTGAGCACA-------------TTTAA-AT---AAT--CCATAAACATGCCATTT-CCATCACCTATA------------------------AAT--A----A-TCCTCTCATTACC---------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----ATGCTTT-TATTT--A--------TTAC-----------------------------------------------------CGATG--TACTTCA-TTTTTGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-A------------------C--CATGG--CTAATTT-----ACTGTTC-TT--ACCTTTTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCTGACAAC..........................1911.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGAGGACATGAAATGGTTGGT2811.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAACGCGAGGACATGAAAT.......2311.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACAAACGCGAGGACA.............1911.00100100000000
........................TCGAAAAGGAGAAGGTCGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
ATGAAGTGAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGATTC-------------AAAGA-ATTTTT--TCCTTTAAGCTTTCCATTT-CAATCATCTTTAA-----------------------AAT--A----A-TATTCTCATTACCC--------------CAT---CACGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTT--A--------TAAC------------------------------------------------------TATTTTTAATATT-ATTAAA-----------------------------------------------------------------------CT-----------------------------------------------------------------------------------------A-TA-A------------------C--CTTAA--CTAATTA-----AACATTC-TT--TAATTGCAACAGAAAATCTGCCAAGATGCTGACAATAAACGCGAGGATATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
droBia1
ATGAAGTCAATACCATGGAGGAATTCGAGAAGGAGAAGGTCGTCTTCCAGGTGAGATTT-------------ATAGA-ATAGCT--TTGCTTAAGCTGCCCATCT-GAATCATTCCTA------------------------AAT--A----A-TCTTCTCATTACCC--------------CAT---CATGCA-TGCCTA-AAGCTAAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATTA--T--TT-----------------AATATCACGATGATGCCC-TTGCCTTT-CTTTAAAAGTTC------------------------------------------------------------------------------------------ACTA------AATACCTATTAAGAG-AGAGCACATAGGCATCTGGCATCACA-----------TAACTAT------------------------TCGGTA-AC------------------C--CCTTA--CTTATAA-----AATTTAT-TT--TATTTATAACAGAAAATCTGCCAGGATGCTGACAACAAGCGCGAGGATATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
droTak1
ATGAGGTCAATACCATGGAGGAATTCGAGAAGGAGAAAGTCGTGTTCCAGGTGAGCTAC-------------TCAGA-ATATCT--TCTTGTAAGCCTTCCATTT-CAATCATCCCTA------------------------AAT--A----A-TATTCTCATTACCC--------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TACAT--A--------GAATC--------------------------------------------------------------TTCA-CTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA-AC------------------C--TAATA--CTAATTA-----AATGTTT-CTCCTTTTTGCAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGTTGGTSizeHit CountTotal NormTotal
No Reads
droEle1
ATGAAGTTAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCTAA-------------GCAAAAATAAAC--TTCTTTATGCTATCCATTT-CAATCATACCTA------------------------AAT--A----A-TCTTCTCATTACC---------------CAT---CATGCA-TGCCTT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--A--------AAATTAACTATC-----------TGATGCCAACTGTCTTTTC------------TTA-----------------------------------------AAACAAAGATTTGTTTGGCATGATCT---------------------------------------------------------------------------T-T-------------------------------------TGCA-AC------------------C---TTTA--TTAATAA-----AATTAAT-TT--TTTTTGTAACAGAAAATCTGCCAAGATGCCGACAACAAACGGGAGGATATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
droRho1
ATGAAGTTAATACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGTTAA-------------ACAAACATAT-----GTTTTCACCTTTCCATTT-CGCTCATCCCTA------------------------AAT--A----A-TCTTCTCATTACC---------------TAT---CACGCA-TGCATT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--A--------GAATCAAATATCTAATACCGCTGTGATGCCAACTGC-TTTTC------------TTA-----------------------------------------AA--------------------------------------TTAACATTTAATTATAATAACAG-----A-ATGAGCACA-------CTGGCATCACAGTTAATT-------------------------------------TCTA-AG------------------C--CCATA--CTAATTA-----AATATTA-TT--TATTTGTAACAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGTSizeHit CountTotal NormTotal
No Reads
droFic1
ATGAAGTGAACACCATGGAGGAATTCGAAAAGGAGAAAGTTGTCTTCCAGGTGAGCTGC-------------ATAAA-TTATAT--TTAATTAAGCTTTCCATTT-CATTCATCCCTA------------------------AAT--A----A-TCTTCTCATTACC---------------CAT---CATGCA-TGCAAA-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGATAT-TATAT--A--------GAATCTATAATCACT---------------C-TTCACTGT-GTTGTAAACTTCCTTA-----------------------------------------AGACAGATATTACTT---------------------------------------------CTGTGTGAA-ATAAGTTTA-------CTGGCAGCACAGTTCC-T-------------------------------------TGTA-AC------------------C--CAAAA--CTAATTC-----ATTATTA-T---TTTTTACAATAGAAAATCTGCCAAGATGCTGACAACAAACGCGAGGATATGAAGTGGCTGGTSizeHit CountTotal NormTotal
No Reads
droKik1
ACGAAGTAAACACTATGGAGGAGTTTGAAAAGGAGAAGGTTGTCTTCCAGGTGAGTTTT-------------CTAAA-TTAATT--AGGTTCAAGTCCTCCATTT-CAATCATCGTGA-A---------------------AAAT--A----A-TCCTCTCATTAAC---------------CCTTCACACGCA-TGCCTTCAAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--GTTTAGATATT---T----TATAGTTCCGCAGTGATGCCATC-------------------------AATATATA--------------------------------------------------TATAATCTTTGCAATTGTTTTATTAAAATC----TATAATATCCGTAAAAAT-AAAAACCA-------ATGGCATCCCTGCTGTCTCCCAAAACATC------------------------TTAGTA-AC------------------T--CCCTT--TAC--------------CT-TT--ATTTTTAAACAGAAAATCTGCCAAGATGCGGACAACAAACGTGAAGATATGAAATGGCTTGTSizeHit CountTotal NormTotal
No Reads
droAna3
ATGAAGTAAACACCATGGAAGAATTCGAGAAGGAGAAGGTGGTCTTCCAGGTGAGTTCA------AGA----TCAGAAATC-AT--TATTTTAAACTTTGCATCCACAATCATCCTGA------------------------AAT--A----A-TCTTCTCATTAAT---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-ACAAT--T--TC------C-------------------------------------------------------------------A-CTTTTTAAAAGCCAATGTTCTTTTAA------------------------------------------------------------------------------------------------------------------AAAGCTACCTCCTGGATTTTAAATTTCAC-------------------------------------TAA-AATAAAT--TT-AT--ATTTTTCTTTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGATATGAAGTGGCTGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGACAACAAGCGCGAGG................2212.002002000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGCGAGGATATGAAGTGGCT...2511.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCCGACAACAAGCGCG...................2611.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGACAACAAGCGCGAGGATA.............2511.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACAAGCGCGAGGATATGAAG........2511.001100000
.......AAACACCATGGAAGAATTCGAGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGCGAGGATATGAAGT.......2111.001000001
..GAAGTAAACACCATGGAAGAATTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................TTCGAGAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................AATTCGAGAAGGAGAAGGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTGCCAAGATGCCGAC.............................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGACAACAAGCGCG...................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGAGGATATGAAGTGGCT...2211.001100000
....................GAATTCGAGAAGGAGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGCGAGGATATGAA.........1911.001000010
...................................................................................................................................................................................................TGCCGT-AAGCTGAGGGAGCTA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................AAGGAGAAGGTGGTCTTCCAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCAAGATGCCGACAACAAGCGC....................2511.001100000
..........................GAGAAGGAGAAGGTGGTCTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................GAATTCGAGAAGGAGAAGGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGATGCCGACAACAAGCGCGA..................2511.001000001
.......................TTCGAGAAGGAGAAGGTGGTCTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCAAGATGCCGACAACAAGCGCGA..................2811.001000001
.....................................................................................................................................................................AT---------------CATTCTCATGCA-TGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
ATGAAGTAAACACCATGGAGGAATTCGAGAAGGAGAAGGTTGTCTTCCAGGTGAGCTAA------AGT----CCAGAAACAA-----GTCCCAAACTTTTCATTCAAATTCATCCTGA------------------------AAT--A----A-TCTTCTCATTAAA---------------CATTCTCATGCA-TGCCGT-AAGCTGAGGGAGCTAGTGGTAACT-AAT----CTGCTTT-TATAT--T--TC------AA-----------------------------------------------------CT---------------TTTCAAAGGACAATGTCCTATTAA------------------------------------------------------------------------------------------------------------------ATGGGCTACTCCTGGATTTTCAATCTCAC-------------------------------------TAACAATCCTT--TT-CC--ATTTTGCCCTAGAAAATCTGCCAAGATGCCGACAACAAGCGCGAGGACATGAAATGGCTGGTSizeHit CountTotal NormTotal
No Reads
dp5
ATGAAGTCAATACCATGGAGGAGTTTGAGAAGGAGAAGGTCGTCTTCCAGGTACGTTTTCC-----------TTAGA-AT---GAT---TACTAT-----CATCC-CTTTCATTCGTAAA---------------------ATAT--A----T-TCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT-CACAT--T--TAAATAGTAC-----------------------------------------------------CTACTCGTAGCACA-ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........ACCATGGAGGAGTTTGAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
ATGAAGTCAATACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTCTTCCAGGTACGTTTTCC-----------TTAGA-ATA---AT---TACTAT-----CATCC-CTTTCATCCGTAAA-------A-------------ATAT--A----T-TCTTCTCATTAAC---------------CAT---TATGCT-TGCATTAAAGCTGAGGGAGCTAGTGGTAAATTAAT----ATGCTTT-CACAT--T--TAAATATTAC-----------------------------------------------------CTATTCGTAGCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................GAAAAGGAGAAGGTCGTCTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.....................AGTTTGAAAAGGAGAAGGTCGTCTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.TGAAGTCAATACCATGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droWil2
ATGAGGTCAACACCATGGAGGAATTTGAGAAGGAGAAGGTTGTTTTCCAGGTAAGTCTTGCGTAAA-ATTAAAAAAATATAT-------------------AT-----------TAAA------------------------AAT--C----A-TCTATTCATTGAAACATCTTTTGTCATTTGT-CTACTGCA-TGC-----AGCTAAGGGAGCTAGTGGTAATTGAAA----ACGCTTT-TACAT--T--TA------ATTT---------------------------------------------------TAAAG---------------------CTTCTGATCTA-----------------------------------------------------------------------------------------------------------TAACAAACAAAAT------------------------AAGTA-AC------------------T--TATGC--TTAAT---------------TT--ATTTTCTCACAGAAAATCTGTCAAGATGCCGATAACAAACGAGAGGACATGAAATGGTTGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGAC..............1815.00541000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAACGAGAGGACATGAAATGGTT...2613.00300120
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATAACAAACGAGAGGAC..............2211.00110000
...................GGAATTTGAGAAGGAGAAGGTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..............ATGGAGGAATTTGAGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
......................ATTTGAGAAGGAGAAGGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAAACGAGAGGACATG...........2011.00110000
...................GGAATTTGAGAAGGAGAAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATAACAAACGAGAGGACATGAA.........2611.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGACATG...........2111.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGACA.............1911.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAAGATGCCGATAACAAACGA....................2511.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGAGAGGACATGAAATGGT....2811.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATAACAAACGAGAG.................1911.00100100
droVir3
ATGAGGTCAACAGCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTTGA------A------TGCTA-AT---CGC---------------------------CC-------CCAAAAAT----AGCTTGA-TAT--AAAAACTCCTTGCTAATATT---------------TGT---TACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAA----TTGCTTT-TGCTA--A--------TA---------------TAACAA----------------------------------ATACACATATTCCT-AAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-C------------------C--TA-----TTAATAACAAT-ATTGTT--------TTGTTCGCAGAAAATCTGCCAGGATGCAGATAACAAACGCGAGGACATGAAGTGGCTGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGCAGATAACAAACGCGAGGA...............2611.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGGACATGAAGTGGCTGGT2311.001000100000000000000000000000000000000000000000000000000000000000
..GAGGTCAACAGCATGGAGGAGTTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
ATGAGGTCAACAGCATGGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
...........AGCATGGAGGAGTTTGAAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.....GTCAACAGCATGGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGCGAGGACATGAAGT.......2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGGACATGAAGTGGCTG..2211.001000000000000000000000000000000000000100000000000000000000000000
...........................AAAAGGAGAAGGTTGTTTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
........................TTGAAAAGGAGAAGGTTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGGATGCAGATAACAAACGC....................2411.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGCGAGGACAT............2011.001000000000000000001000000000000000000000000000000000000000000000
..................................................GTGAGTTGA------A------TGCTA-AT---CGC---------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
droMoj3
ACGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTCGTTTTCCAGGTGAGTTCA------A------TGCTA-AT---CGA---------------------------TA-------ACAAA-------TGCCTG--AATATATATTTGACTTGCCGACATT---------------TAT---TCTGCT-TGCATG-CAGCTGAGGGAACTAGTGGTAAAAAAAA----TTGTTTTTTGCT---A----------------------------------------------------------------------------------------------------------AAATAA------------------------------------------------------------------------------------------------------------AT------------------------ATGTA-ATATATATTTATTTTCTGGATGAC--GGCACTAATCG-----AATATT-------TCTCATTGTAGAAAATCTGCCAGGATGCAGATAACAAACGTGAGGACATGAAGTGGCTGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGTGAGGACATGAAGT.......2512.002200000
......................GTTTGAAAAGGAGAAGGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......................GTTTGAAAAGGAGAAGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........................TGAAAAGGAGAAGGTCGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..GAGGTCAACACCATGGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATAACAAACGTGAGGA...............2011.001100000
.....................AGTTTGAAAAGGAGAAGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..GAGGTCAACACCATGGAGGAGTTTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...AGGTCAACACCATGGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGAGGACATGAAGTG......1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTCTGGATGAC--GGCACTAATCG-----..........................................................................2611.001000001
...........ACCATGGAGGAGTTTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............CATGGAGGAGTTTGAAAAGGAGAAGGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATAACAAACGTGAGGACAT............2111.001100000
.......CAACACCATGGAGGAGTTTGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
.............CATGGAGGAGTTTGAAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACAAACGTGAGGACATGA..........2211.001000001
droGri2
ATGAGGTCAACACCATGGAGGAGTTTGAAAAGGAGAAGGTTGTTTTCCAGGTGAGTTAA------A------TGCTA-AT---CCC---------------------------TT-------AAAAAAACAGTCAGCTTCA-AAT--TATA-A-T-----CCCCATT---------------TAT---AACGCC-TGCATG-CAGCTAAGGGAACTAGTGGTAACT-AAATTAATTGCTTT-TGCCT--A--------TCTA-----------------------------------------------------CTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATACTAGTCAATATG-----------------------A----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:54 AM