ID:

dsi_12353

 Coordinate:

3l:16378838-16378987 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16378988_16380074_-]; exon [3l_16378988_16380074_-]; intron [3l_16378402_16378987_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGCCAAGATTGCCAAGTCTAGGCCTCATTCCGAGTGGCTGCAGCAGAAGGTGAGTTAAGGTTTGGTCGTCACATGTGGTATGAGGAAAGACTCGGTGGAGTTAGAATCGTTAGAATGTTTTCAGTAACTCTACCCTAAATTTAAAAATACAAAAAGATACATTGATCCAATTTTGCTATGAGCATATTTATCCATGGTATTGTTACTAGAAAATGTTCTAAGTTTTAAAGGAGCTTTCAAGATCTGTGC
**************************************************............((((..((((.(((((....(((......)))(((((((((((((.(((....)))..)))..)))))))))).......................)))))))))))))...(((((((............)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.........................TCATTCCGAGTGGCTGCAGCAGAAG........................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
........................CTCATTCCGAGTGGCTGCAGCA............................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.......GATTGCCAAGTCTAGGCCTCATTCCGAGT...................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAAGTTTTAAAGGAGCTTTCAAGATC..... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
..................CTAGGCCTCATTCCGAGTGGCT.................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................CCTCATTCCGAGTGGCTG................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
........................CTCATTCCGAGTGGCTGCAGC............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................CTCATTCCGAGTGGCTGG................................................................................................................................................................................................................ 18 1 1 1.00 1 0 1 0 0 0 0 0 0
.............CAAGTCTAGGCCTCATTCCGAGTGGCTGC................................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0
........................CTCATTCCGAGTGGCTGCAGCAGAAGAA...................................................................................................................................................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................GAAAGACTCCGTGGAG..................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0
..............................................................................GTATGAGGAAAGACTA............................................................................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 1 0 0
...............................................................TGGTCGGCACATGTGGTAA........................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 1 0
........................................................................................AGACTCGGTGGAATT................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................ATTTAACCATGGTATTGCTGC........................................... 21 3 8 0.13 1 0 0 0 1 0 0 0 0
...................................................................................ACGAGAGACTCGGTGGAAT.................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0 0 0 0
...................................................TCAGTTAAGGTTAGGTC...................................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 1 0 0 0 0
...............................................................AGGTCGTCATATGTGGT.......................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................CCATGGTACTGTTTCT.......................................... 16 2 20 0.10 2 0 0 0 0 2 0 0 0
...................................................................................................AGTTGGAATCGTTAG........................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 0 0 0 1
................................................................................................TGAAGTTGGAATCGTTA......................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1
................................................................................................................AGAATGTTTTCATTAA.......................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCCGGTTCTAACGGTTCAGATCCGGAGTAAGGCTCACCGACGTCGTCTTCCACTCAATTCCAAACCAGCAGTGTACACCATACTCCTTTCTGAGCCACCTCAATCTTAGCAATCTTACAAAAGTCATTGAGATGGGATTTAAATTTTTATGTTTTTCTATGTAACTAGGTTAAAACGATACTCGTATAAATAGGTACCATAACAATGATCTTTTACAAGATTCAAAATTTCCTCGAAAGTTCTAGACACG
**************************************************............((((..((((.(((((....(((......)))(((((((((((((.(((....)))..)))..)))))))))).......................)))))))))))))...(((((((............)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
.........................................................................................................................AGTCATCGAGATGGG.................................................................................................................. 15 1 5 0.20 1 0 1 0 0 0
.............................................................AAACCAGCAGTATACA............................................................................................................................................................................. 16 1 5 0.20 1 1 0 0 0 0
..........................................................TCCAAACCAGCTGTG................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 1 0
...........................................................................................................................................................................................AAATAGGTACCATCA................................................ 15 1 6 0.17 1 0 0 1 0 0
.........................................................................................................................AGTCAGTGAGATGGG.................................................................................................................. 15 1 7 0.14 1 0 1 0 0 0
........................GGGTAAGGCTTTCCGACGTC.............................................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0
.....................................................................AGTGTACGCCATAATCC.................................................................................................................................................................... 17 2 10 0.10 1 0 0 1 0 0
.............................................................AAACCAGCAGTATAC.............................................................................................................................................................................. 15 1 10 0.10 1 1 0 0 0 0
...................................................................................................................TACAAAAGTCATGTAGATGA................................................................................................................... 20 3 17 0.06 1 0 0 0 0 1
.....................................AGACGTCGTCTTCCA...................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0
............................................................................................................................................AAATTTTTATGTTATT.............................................................................................. 16 1 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 04:32 AM