ID:

dsi_12331

 Coordinate:

3l:20001439-20001648 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_20001649_20001651_-]; intron [3l_20001345_20001411_-]; CDS [3l_20001412_20001438_-]; exon [3l_20001412_20001438_-]; five_prime_UTR [3l_20001652_20001745_-]; exon [3l_20001649_20001745_-]; intron [3l_20001439_20001648_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------###########################-----------------------
ATATCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGAGGCGATGGGACATGTGGTGGCGATGGTTATGTAACAGACTGTTAGTGCGCATAAAATGGACTTTAAAACAGGATATATGACAAATACTGTCTGATAAAAGTGGATAAACCAATGATAATCATTCTAAGGATGCAATAGTTATAATCATTTCAAGGTGACATTGTTCTAATGACTTCTATTATTTCTTTTTAACTACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTCGAAAGCATATGATAA
**************************************************((((..((((((.((((((((((..(((.((((((((((.......((((((((.((.......)).)))....)))))..(((..((((.....))))..)))....(((.....)))........(((((...))))).......))))))))))))).....))).))))))).)).))))..))))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 M023
head
 GSM343915
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
....................................................................CTTGTGCTGGCGATGGTT................................................................................................................................................................................................................................ 18 2 9 2.44 22 2 0 1 10 2 3 0 2 1 1 0 0
.....................TTTGCATAAATTGAGTCTGAGT........................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................AAATTGAGTCTGAGTGATAATGACC................................................................................................................................................................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................AAATTGAGTCTGAGTGATAA...................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.TATCGCGTGCGAGGAGAGGATTTG............................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GAACGAAAGTTAGTTCGAAGGC......... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................TTGCATAAATTGAGTCTGAGT........................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................GAGGGTTATGTAACAG....................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................GGCCTTGTGCTGGCGATGGTT................................................................................................................................................................................................................................ 21 3 7 0.86 6 0 0 0 5 0 1 0 0 0 0 0 0
..................................................................GCCTTGTGCTGGCGATGGTT................................................................................................................................................................................................................................ 20 3 11 0.45 5 0 1 1 2 1 0 0 0 0 0 0 0
..............................................................ATGGGACATGTGGAGGCCATT................................................................................................................................................................................................................................... 21 3 6 0.33 2 0 0 0 0 0 0 2 0 0 0 0 0
......................................................................................................................................ATGAGAAATCCTGTCTGA.............................................................................................................................................................. 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAATACTGTCTGATAAAG......................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
........TGCGAGGATAGGACTTGC............................................................................................................................................................................................................................................................................................ 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TGACAAAGGAACCAAACC..................... 18 2 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................................ATACGGTCTGATAAGAG........................................................................................................................................................ 17 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TGTGCTGGCGATGGTTC............................................................................................................................................................................................................................... 17 2 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TATTACTTCTTTTGAACTACT....................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TTCTAATATTTCTTTTGGACT.......................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................ACAAATACGGTAGGATAAAA......................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................ATGGGACATGTGCTG......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................GTGCTGGCGATGGTT................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TATAGCGCACGCTCCTCTCCTAAACGTATTTAACTCAGACTCACTATTACCATTTACTCCGCTACCCTGTACACCACCGCTACCAATACATTGTCTGACAATCACGCGTATTTTACCTGAAATTTTGTCCTATATACTGTTTATGACAGACTATTTTCACCTATTTGGTTACTATTAGTAAGATTCCTACGTTATCAATATTAGTAAAGTTCCACTGTAACAAGATTACTGAAGATAATAAAGAAAAATTGATGGTTGTCTGGTCGATATGACTGTTTCCTTGGTTTCATTCAAGCTTTCGTATACTATT
**************************************************((((..((((((.((((((((((..(((.((((((((((.......((((((((.((.......)).)))....)))))..(((..((((.....))))..)))....(((.....)))........(((((...))))).......))))))))))))).....))).))))))).)).))))..))))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
........ACGCTCCTGTCCTAAA.............................................................................................................................................................................................................................................................................................. 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................TGTCTGACAATAACGAGT......................................................................................................................................................................................................... 18 2 4 0.50 2 0 2 0 0 0 0 0 0 0 0
...........................................................................ACCGCTACCACGACATTATCT...................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................CTTTTTCCCTCGTTTCATTCAA................ 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCACGGTAACAAGATTAC................................................................................. 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................TTAGATGGTTGTCTGGTCG............................................ 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................GTTACTATTAGTACGATA............................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................TATGGTTGTCTGGTCGCTAC........................................ 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
........ACGCTCCTGTCCTAA............................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................AAAAAAGAAAAATTGAT......................................................... 17 1 20 0.10 2 0 0 1 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................AGGGTTGTCTGGTCG............................................ 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTTTATGGTGGTCTGGTCGA........................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................AAGGTTGTCTGGTGGAGAT........................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................TCTGGTCAATTTGGCTGTT................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATGTAACAAGATAACTG............................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20001389-20001698 - dsi_12331 ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGAGGCGATGGGACATGTGGTGGCGATG--GTTATG----------------------------------------------------------------------------------------------------------------------TAACAGACTGTTAGTGC-GCATAAAATGGACTTTAA-------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATATATGACAAATACTG--TCT--GAT------------------------------------------------------------------------------------------------------AAAAGTGGATAAACCAATGATAATCA-----------------------------------------------------------TT-CTAA-----------GGA------TGCAATAGTTA-----------------TAATCATTTCAAGGTGACATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCTATTATTTCTTTTT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTCGAAA-G----CA-----TATGAT-----AA
droSec2 scaffold_11:327752-328058 - ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGA-----TGGGACATGTGGTGGCGATG--GTTATG----------------------------------------------------------------------------------------------------------------------TAAGAGCCTGTTAGTGC-GAATTAAATGGACTTTAA-------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATATATGACAAATACTG--TCT--AAT------------------------------------------------------------------------------------------------------AAAAGTGGATAAACCAATGATAATCA-----------------------------------------------------------TT-ATAA-----------GGATCCAAATGCAATAGTTA-----------------TAATCATTTCAAGGT------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCCATTATTTCTTTTT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGATCCAAAGTAAGTTCGAAA-G----CT-----TATGCT-TT--TA
dm3 chr3L:20432605-20432921 - ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGAGACGATGGGACATGTGGTGGCTATGTGGTTATG----------------------------------------------------------------------------------------------------------------------TAACAGCCCTTTAGTGC-GAATTAAATGGACTTTAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCTCAA----------------------------------------------------------------------------------------------------------------ACAGGATTTATAACAAATACTG--TCT--AAC------------------------------------------------------------------------------------------------------AAAAGCGGATAAACCAATGATAATTA---------------------------------------------------TACAGACTTT-CTAA-----------GGAT------------------------------------CCATTTCAAGGTGATCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCTATTATTTCTTTTT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTCGAAA-G----CG-----TATGCC-----AA
droEre2 scaffold_4784:20134285-20134635 - ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGG---GTTGGGACATGTG---GCAATG--GTTACG----------------------------------------------------------------------------------------------------------------------TAACGGCCCTTTAGTGC-GAAAGGAGTGGACTTTAAGGAGCCTGGAGAACAATGAAACAAACTTGTAAACTATGAAAATAATTAATTATAACATATAAT-------------------------------------------------AAA--------------TGTAAAAAGCTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATACAAGAGTTATTGATTGTTTGCCATTGTAACCATTTCAAGACGATATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCTATTGTTTCTTTAT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTGCGAAT-A----TA-----TATGCT-----AA
droYak3 v2_chr3L_random_037:3594-3922 - ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGA---GTTGGGCCATGTG---AAAATC--GTTATG----------------------------------------------------------------------------------------------------------------------TAACAGCCCTTTAGTGC-GAAAATAATGATCTTTAAAGAGCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATACAGGATGTCATACTGATACTGATACT--AAT------------------------------------------------------------------------------------------------------AACAGTGGATAAACTAATAAAAATTC------------------------------------------------------------CTTTG----ACCGAA------------------GTTATTGATT-TTAGTCATTGTAATCATTTCAAGACGTTATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGCCTACTATTATTTCTTTAT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTCCGATT-ATA--TA------AAGAT-----TA
droEug1 scf7180000409711:5549068-5549373 + ATA-------TCGCGTGTGAGGAGAGGATTAGCATAAATTGAGTCTGAGTGATAATGGTAAATAG---GCTGGGACATGTG---CCAAGT--GTTATG----------------------------------------------------------------------------------------------------------------------TAACAT------ATTGT-GGATAAAGTGGACTTCGAACATATTAAAT---------------------------------------------ATTTTATCAATGAAAAGTTTGAACATGTGTGTTTAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTAAGT---TTTTATGCTTATACATTTA-------------------------------------------------------------------------------------------------------AATTTAAA-----CTTTT----ACCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATA------------------------------TTCTAA------------------------------------------------------------------------TAC---------------------------------------------------------CAATTTTAACACT--T----CTAACTC-----CACCAACAGACCAGCTATACTGACAAAGGATCCAAAGTAAGTCTTAAA-A----TA-----TGTCAT-----AT
droBia1 scf7180000302193:5624442-5624775 + ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAAGGA---TTTGGAACATGTG---CCTAGT--GTTATGTAATACCGAAAAGTTTACAAAAATGATATATAATTTTAAAAAACTCTGTTGAAAATGAAAAGTTTACAAAGCTTGTGTCTTAAACATAGAAGTGTTTATCGTGTTCTATATATTTATATTATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCTGAAT---TT------ATTTTAAAGATATTTCTTATCAATACATTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGTTCCTTAAAATTCCT--AT--ACT-------TCCTTTTAGACCAGCTATACTGACAAAGGAACCAAAGTGAGTATGAAA-A------------AACCC-----AA
droTak1 scf7180000415254:233467-233832 + ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGA---ACTGATACATGTG---GCGAGA--GTTATG----------------------------------------------------------------------------------------------------------------------TAATACCTTAAAAGTGT-AAAAT---------------------------TTTGAAATCTATTTTAAAACAGTGTGAAAAGTGTATAATAATACTAATA-------------------------------------------------AAA-TCTATCTGAATGTTCTAAAAATTTTAAAAACTTTATACAAATAGAATTT-TTTCTTAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-TCT--CAG------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------------------------------------------AGATGTGGAT-----------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAGCGATC---TT------AATTTAAAGTGCTTCGTTATTAATATATT------------------------------------------------------------------------------------------------------------------------------------------CTTTTACAATTCTTCT----ACCAC-----CGCCAATAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTCCGATC-G----A------AATTCTACTATAA
droEle1 scf7180000491193:4764011-4764430 - ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGG---GTTGGTACACGTG---CCAAAA--GTTTTA--------------------------------------------------------------------------------------------------------------------TATAACCG--T----GTGT-GAAAA-AGTGT-GATC--------------------------------------------------------------------------------------------AAAAATTGTGAAATTTAAATTTAAGTCCGATTTTAAACTA--------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAAACTCTTATAAAAACTAATCCACTTTTAAAATTCGATATACCATTTTCTAGTCTTAATGGTAATGTTAGTCTTACCTTAAATACTAA---------ATAG-----AATA----------------------------------------------------------------------------------------------------------------------------------------------GAACAATAAAATGTTTCTTCCAAGATGATAGTAAAACACGTAACTTCATAAATATAAACTAATTAATG--CTCTATTATCCCTTATT----C-------GCCCAATAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTTAAAA-A-AAGCATACGAAATCCC--A--AA
droRho1 scf7180000769696:44594-44721 - ATA-------TCGCGTGTGAAGAGAGGATTTGAATAAATTGAGTCTGAGTGATAATGGTAATTGA----TTGACACACGTG---CCAAAA--GTTATG----------------------------------------------------------------------------------------------------------------------TAATAACGAGATTGTGT-GAAAAAAAATAACTTCAACAAAAATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454113:1890543-1890930 + ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGG---TTTGACACATGTG---CCTATA--GTTATG----------------------------------------------------------------------------------------------------------------------TAATGCCAAAGTATTGT-GAAATAAGTGTACTTAAA-AA---------------------------------------------------------------------------------------------------------------GTCCAATCCGAAATTA--------------------------------TTTCCTTTCAAAAAGTATTTAAATCAATGGAGTGAAAAATAA-------------------GAAAGCA--------AA---------------------------------------------------TACACAAAAAT---------------------------------------------TTG--TCT--TAAAAAAG------------------------------------ATTTAAAGTGGTTTTAAAG--------------GGTT--------------------------------------------------TTACTACCATAAAA---------------------------------------AA---------------------------------------------------------------------------ATTTTGTATTAAAAATTTA-----------------------------------------------------------------------------GAAAGTGATTTATAAGAATAAAAAAATAATG---------------------------TATTTATAATC------------------------------AAA----------------------------------------------------------------------------------------------------------------------------------------TCCTTTAT-----------TTTC-----TTTCTTCAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTACAAA-A----AA----ATATCAT--T--AA
droKik1 scf7180000302441:3158490-3158612 - ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAT--GG--CTAAAGATAATGTG---------------------------------------------------------------------------------------------------------------TTAAACGTGTGCCAAAGAGTTATATAAGATGGTGATAGTGA-GAA---AAAGGACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:10800007-10800408 - TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATTG---GTAGAAACATGTG---CCCCA-----------------------------------------------------------------------------------------------------------------------TAGTTATATAACTA--TGAAAGTG------------AAGTTTTA-------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAA-ATGT-------------GACAAAAAAACGCATCTTGTTAGATATATAGTTACAATAAAGGATAAAAACATAGAGGATGTTAT-TAAAAATATCATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTGA-----------------------------------------AAACCTGAAAAAATCGAC--ATAATTTACATATATTCC-AAGAGAAACTGAA----------------------------------------------------GTGAAATTTTTTGAATACCTTTTT-----------------------------------------------------------------------AATTAAA---------A------------TTAA---TTTAAAAAATAACAAAA---------TATTTATACTCAATAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTATTCGTT--T----TTTCTTT-----TGCCGACAGACCAGCTATACTGACAAAGGAACTAAAGTAAGTTCAAAA------TA-----TATTCC-------
droBip1 scf7180000396569:579686-580005 + TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATAG---GTTGAAACATGTG---CCTATA--GTTATA----------------------------------------------------------------------------------------------------------------------TAACACCATG---GTGCTGAA--AAGTGATGTTTAA-------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTA-TTAG------------------------------------------------------------------------------------------------------------GATTAAAGGATAT-----------TG--CTT--TAT------------------------------------------------------------------------------------------AATAAATTAAATAAAAGTGA-----------------------------------------AAATCT--AAGAATTGGTGGAAAGTTTATATACATTTC-TTGAAGAACTGAA----------------------------------------------------GTGATATTGTTTTAAAACTCTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------------TAAATATTAATACCT-C----CTTTTTT-----CGTCGACAGACCAGCTATACTGACAAAGGAACTAAAGTAAGTCCAAAA------TA-----TATTCC-------
dp5 XR_group8:7851690-7852014 - TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGT------GAAAAGTGTT---CCAAAG--GAAAAG----------------------------------------------------------------------------------------------------------------------AACCAACGTGGCTGTGC-GTGAAATAGTGATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATATTTT------------------------------------------------------------------------------GGCTGATCCTTTCACGGATATTTGAAATCTCTATTGAATTAAACATCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAAAGTTATATTGTGATGACGATGACCCATCTATCTTT----AATATTGTAGATCCCTAACCTAT----------------------------------------------------TTTTT----CCATTCCATT-------TCCGCTGTGCTAATAGACCAGCTATACTGACAAAGGAACCAAAGTAAGACCTAAT-G----AA-----AATT-CACTA-CA
droPer2 scaffold_40:41696-41752 - TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004830:524852-525137 + AAATTTTTAAACGCGTGTGAGGTGAAAATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATTT---TCCATGAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCT--------------------------------------------------------------GTC--------------------------------------------------TCATTACCATCAATTAAAAGTAGAAATCA--AACTATATATAGTATGAATTTAAA-----CT------------------------------------------------------TTCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCATAATC------------------------------ACATTATTTCTATTATTGAATGATATAATATGTTATCTATGACTTAAATATATTTTTCGGA-------------------------------------------------------------------------------------------T----ATTGC-----CAAACACAGACCAGCTATACTGACAGAGGAACCAAAGTGAGTGAT--TTAAC--CA-----TGGATG-----AA
droVir3 scaffold_13049:18902413-18902759 + dvi_20546 ATA-------CCGCGTGTGAGGAAGAGTTTTGCATAAATTGAGTCTGAGTGATAATGGTAAAAAA---TATT-------T-----------------------------------------------------------------------------------------------------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTAAGTGAAATATAAAT--GTTATCAGACTGAAAGAAAGTG--------AAGAAGATTGCCAGAA------------TAA---------A-------CATATTACACAAAAATATATTACAATAAATGAGTGCTGGAAATTTGAATTTCCTGCATATACTAA-TCT--CAA------------------------------------------------------------------------------------------------------GAGGGAGGATATAGAAGTGTTTACTC-------------------------------------------------------------TCTG----ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----AAAATTGATG---------------------------TTTTTATACTTGTCAAAC---------------------------TA---------------------------------------------------------------------AACTAA-----------------------------------------------------CTTCTTTCTTTAA--CTTAAT--GCT-------TCACCATAGACAAGCTATATTGACAAAGGAACCAAAGTGAGTACA---------CA-----TATCGA-----AA
droMoj3 scaffold_6680:12322037-12322352 - ATA-------ACGCGTGTGAGGAAGAGTTTTGCATAAATTGAGTCTGAGTGATAATGGTAAAGAT-TTGCTTGTGAATATG---CCAAGA--GTAGT-------------------------------------------------------------------------------------------------------------------TATATAAT---CCGACAAAGT-GAAGGAACTCACTATGAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATGAAT-----------------------------------------------------------------------------------GACTAAGGAAATACCAAG-ACAAATATATTGATCGTCACTTAAAA--------------------------------------------------------------------------GTTAATTTATGTCTACCTAAATCTGCATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCA---GTCAAAC---------------------------TA---------------------------------------------------------------------AACCTAT----------------------------------------------------TACTTTCTTTTGCT--C----TTATCTT-----TCTCTATAGACCAGCTATACTGACAAAGGATCCAAAGTAAGCAAT--TCATA--TA-----TATTTT-----AA
droGri2 scaffold_15110:19869416-19869775 + ATA-------ACGCGTGTGAGAAGGAGTTTTGCATCAATTGAGTCTGAGTGATAATGGTAATGAA---TCTG-------TG---A----T--GTTATA----------------------------------------------------------------------------------------------------------------------TAACGCATAATAAATAT-G-------TGAA--TTAAAATGCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------AAGTG--------AAG-----TGATGAAC------------TAA---------A-------CCTGCTTTCCA-------------------------------ACAGAAAACGT---------TG--CTCCATTCTAAAGATTTTTTAGTGAATTATTAATTGTACTTCTAGAATTCTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------GTGATATTTGTTCATTCAGCTTTT-----------------------------------------------------------------------ATTCAAA---------ATCG-----AAAACTACTATTTTATATAATATTAAATTTTACAAAT---TC------TTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TTTAT--TTTTTT--AATT------CCGCAATAGACAAGCTATACTGACAAAGGAACCAAAGTAAGTTCACA----------------TCGT-----AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGAGGCGATGGGACATGTGGTGGCGATG--GTTATG----------------------------------------------------------------------------------------------------------------------TAACAGACTGTTAGTGC-GCATAAAATGGACTTTAA-------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATATATGACAAATACTG--TCT--GAT------------------------------------------------------------------------------------------------------AAAAGTGGATAAACCAATGATAATCA-----------------------------------------------------------TT-CTAA-----------GGA------TGCAATAGTTA-----------------TAATCATTTCAAGGTGACATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCTATTATTTCTTTTT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTCGAAA-G----CA-----TATGAT-----AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................TTTGCATAAATTGAGTCTGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...................................AAATTGAGTCTGAGTGATAATGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...................................AAATTGAGTCTGAGTGATAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.TA-------TCGCGTGCGAGGAGAGGATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.............................TTGCATAAATTGAGTCTGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAGGAACCAAACC....................................18100.20220000000000000000
droSec2
ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGA-----TGGGACATGTGGTGGCGATG--GTTATG----------------------------------------------------------------------------------------------------------------------TAAGAGCCTGTTAGTGC-GAATTAAATGGACTTTAA-------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGATATATGACAAATACTG--TCT--AAT------------------------------------------------------------------------------------------------------AAAAGTGGATAAACCAATGATAATCA-----------------------------------------------------------TT-ATAA-----------GGATCCAAATGCAATAGTTA-----------------TAATCATTTCAAGGT------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCCATTATTTCTTTTT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGATCCAAAGTAAGTTCGAAA-G----CT-----TATGCT-TT--TASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................AGTGATAATGGTAAATGA-----TGGGACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
...........CGCGTGCGAGGAGAGGATTTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.................................................TGATAATGGTAAATGA-----TGGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...............................GCATAAATTGAGTCTGAGTGATAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
dm3
ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGAGACGATGGGACATGTGGTGGCTATGTGGTTATG----------------------------------------------------------------------------------------------------------------------TAACAGCCCTTTAGTGC-GAATTAAATGGACTTTAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCTCAA----------------------------------------------------------------------------------------------------------------ACAGGATTTATAACAAATACTG--TCT--AAC------------------------------------------------------------------------------------------------------AAAAGCGGATAAACCAATGATAATTA---------------------------------------------------TACAGACTTT-CTAA-----------GGAT------------------------------------CCATTTCAAGGTGATCTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCTATTATTTCTTTTT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTCGAAA-G----CG-----TATGCC-----AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................ATGAGACGATGGGACATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG--TCT--AAC------------------------------------------------------------------------------------------------------AAAAGCGGATAAACCAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCGTGCGAGGAGAGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........CGCGTGCGAGGAGAGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................ATGTGGTGGCTATGTGGTTATG----------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--AAC------------------------------------------------------------------------------------------------------AAAAGCGGATAAACCAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................GAGACGATGGGACATGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................GGAGAGGATTTGCATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACCAATGATAATTA---------------------------------------------------TACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTG--TCT--AAC------------------------------------------------------------------------------------------------------AAAAGCGGATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTT--AAC-------TACCAACAG.................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TTGAGTCTGAGTGATAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGCATAAATTGAGTCTGAGTGATAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......................................TGAGTCTGAGTGATAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................TAAAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCTCAA----------------------------------------------------------------------------------------------------------------ACAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGAGGAGAGGATTTGCATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATTGAGTCTGAGTGATAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................TGATAATGGTAAATGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..................................................................ACGATGGGACATGTGGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTA---------------------------------------------------TACAGACTTT-CTAA-----------GGAT------------------------------------CC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGAGTCTGAGTGATAATGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCTATTATTCA...........................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................ATGGTAAATGAGACGATGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGG---GTTGGGACATGTG---GCAATG--GTTACG----------------------------------------------------------------------------------------------------------------------TAACGGCCCTTTAGTGC-GAAAGGAGTGGACTTTAAGGAGCCTGGAGAACAATGAAACAAACTTGTAAACTATGAAAATAATTAATTATAACATATAAT-------------------------------------------------AAA--------------TGTAAAAAGCTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATACAAGAGTTATTGATTGTTTGCCATTGTAACCATTTCAAGACGATATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGACTTCTATTGTTTCTTTAT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTGCGAAT-A----TA-----TATGCT-----AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................TGATAATGGTAAATGG---GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000020
..........................................................................................................................................................................................................................................................................................AAACTATGAAAATAATTAATTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
...........CGCGTGCGAGGAGAGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.............CGTGCGAGGAGAGGATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..........................GATTTGCATAAATTGAGTCTGAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
.........................................................GTAAATGG---GTTGGGACATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..............................................................................................................................................................................................................................................................AGCCTGGAGAACAATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000100
droYak3
ATA-------TCGCGTGCGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGA---GTTGGGCCATGTG---AAAATC--GTTATG----------------------------------------------------------------------------------------------------------------------TAACAGCCCTTTAGTGC-GAAAATAATGATCTTTAAAGAGCCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATACAGGATGTCATACTGATACTGATACT--AAT------------------------------------------------------------------------------------------------------AACAGTGGATAAACTAATAAAAATTC------------------------------------------------------------CTTTG----ACCGAA------------------GTTATTGATT-TTAGTCATTGTAATCATTTCAAGACGTTATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGCCTACTATTATTTCTTTAT--AAC-------TACCAACAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTCCGATT-ATA--TA------AAGAT-----TASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.TA-------TCGCGTGCGAGGAGAGGATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
............GCGTGCGAGGAGAGGATTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100100000000
droEug1
ATA-------TCGCGTGTGAGGAGAGGATTAGCATAAATTGAGTCTGAGTGATAATGGTAAATAG---GCTGGGACATGTG---CCAAGT--GTTATG----------------------------------------------------------------------------------------------------------------------TAACAT------ATTGT-GGATAAAGTGGACTTCGAACATATTAAAT---------------------------------------------ATTTTATCAATGAAAAGTTTGAACATGTGTGTTTAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTAAGT---TTTTATGCTTATACATTTA-------------------------------------------------------------------------------------------------------AATTTAAA-----CTTTT----ACCGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATA------------------------------TTCTAA------------------------------------------------------------------------TAC---------------------------------------------------------CAATTTTAACACT--T----CTAACTC-----CACCAACAGACCAGCTATACTGACAAAGGATCCAAAGTAAGTCTTAAA-A----TA-----TGTCAT-----ATSizeHit CountTotal NormTotal
No Reads
droBia1
ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAAGGA---TTTGGAACATGTG---CCTAGT--GTTATGTAATACCGAAAAGTTTACAAAAATGATATATAATTTTAAAAAACTCTGTTGAAAATGAAAAGTTTACAAAGCTTGTGTCTTAAACATAGAAGTGTTTATCGTGTTCTATATATTTATATTATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCTGAAT---TT------ATTTTAAAGATATTTCTTATCAATACATTCTAA-----------------------------------------------------------------------------------------------------------------------------------TGTTCCTTAAAATTCCT--AT--ACT-------TCCTTTTAGACCAGCTATACTGACAAAGGAACCAAAGTGAGTATGAAA-A------------AACCC-----AASizeHit CountTotal NormTotal
No Reads
droTak1
ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGA---ACTGATACATGTG---GCGAGA--GTTATG----------------------------------------------------------------------------------------------------------------------TAATACCTTAAAAGTGT-AAAAT---------------------------TTTGAAATCTATTTTAAAACAGTGTGAAAAGTGTATAATAATACTAATA-------------------------------------------------AAA-TCTATCTGAATGTTCTAAAAATTTTAAAAACTTTATACAAATAGAATTT-TTTCTTAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-TCT--CAG------------------------------------------------------------------------------------------------------AA-----------------------------------------------------------------------------------------------AGATGTGGAT-----------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAGCGATC---TT------AATTTAAAGTGCTTCGTTATTAATATATT------------------------------------------------------------------------------------------------------------------------------------------CTTTTACAATTCTTCT----ACCAC-----CGCCAATAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTCCGATC-G----A------AATTCTACTATAASizeHit CountTotal NormTotal
No Reads
droEle1
ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGG---GTTGGTACACGTG---CCAAAA--GTTTTA--------------------------------------------------------------------------------------------------------------------TATAACCG--T----GTGT-GAAAA-AGTGT-GATC--------------------------------------------------------------------------------------------AAAAATTGTGAAATTTAAATTTAAGTCCGATTTTAAACTA--------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAAACTCTTATAAAAACTAATCCACTTTTAAAATTCGATATACCATTTTCTAGTCTTAATGGTAATGTTAGTCTTACCTTAAATACTAA---------ATAG-----AATA----------------------------------------------------------------------------------------------------------------------------------------------GAACAATAAAATGTTTCTTCCAAGATGATAGTAAAACACGTAACTTCATAAATATAAACTAATTAATG--CTCTATTATCCCTTATT----C-------GCCCAATAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTTAAAA-A-AAGCATACGAAATCCC--A--AASizeHit CountTotal NormTotal
No Reads
droRho1
ATA-------TCGCGTGTGAAGAGAGGATTTGAATAAATTGAGTCTGAGTGATAATGGTAATTGA----TTGACACACGTG---CCAAAA--GTTATG----------------------------------------------------------------------------------------------------------------------TAATAACGAGATTGTGT-GAAAAAAAATAACTTCAACAAAAATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGG---TTTGACACATGTG---CCTATA--GTTATG----------------------------------------------------------------------------------------------------------------------TAATGCCAAAGTATTGT-GAAATAAGTGTACTTAAA-AA---------------------------------------------------------------------------------------------------------------GTCCAATCCGAAATTA--------------------------------TTTCCTTTCAAAAAGTATTTAAATCAATGGAGTGAAAAATAA-------------------GAAAGCA--------AA---------------------------------------------------TACACAAAAAT---------------------------------------------TTG--TCT--TAAAAAAG------------------------------------ATTTAAAGTGGTTTTAAAG--------------GGTT--------------------------------------------------TTACTACCATAAAA---------------------------------------AA---------------------------------------------------------------------------ATTTTGTATTAAAAATTTA-----------------------------------------------------------------------------GAAAGTGATTTATAAGAATAAAAAAATAATG---------------------------TATTTATAATC------------------------------AAA----------------------------------------------------------------------------------------------------------------------------------------TCCTTTAT-----------TTTC-----TTTCTTCAGACCAGCTATACTGACAAAGGAACCAAAGTAAGTTACAAA-A----AA----ATATCAT--T--AASizeHit CountTotal NormTotal
No Reads
droKik1
ATA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAT--GG--CTAAAGATAATGTG---------------------------------------------------------------------------------------------------------------TTAAACGTGTGCCAAAGAGTTATATAAGATGGTGATAGTGA-GAA---AAAGGACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATTG---GTAGAAACATGTG---CCCCA-----------------------------------------------------------------------------------------------------------------------TAGTTATATAACTA--TGAAAGTG------------AAGTTTTA-------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAA-ATGT-------------GACAAAAAAACGCATCTTGTTAGATATATAGTTACAATAAAGGATAAAAACATAGAGGATGTTAT-TAAAAATATCATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTGA-----------------------------------------AAACCTGAAAAAATCGAC--ATAATTTACATATATTCC-AAGAGAAACTGAA----------------------------------------------------GTGAAATTTTTTGAATACCTTTTT-----------------------------------------------------------------------AATTAAA---------A------------TTAA---TTTAAAAAATAACAAAA---------TATTTATACTCAATAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTATTCGTT--T----TTTCTTT-----TGCCGACAGACCAGCTATACTGACAAAGGAACTAAAGTAAGTTCAAAA------TA-----TATTCC-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATACTGACAAAGGAACT.........................................2011.001010000
.................................ATAAATTGAGTCTGAGTGATAATGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATAG---GTTGAAACATGTG---CCTATA--GTTATA----------------------------------------------------------------------------------------------------------------------TAACACCATG---GTGCTGAA--AAGTGATGTTTAA-------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTA-TTAG------------------------------------------------------------------------------------------------------------GATTAAAGGATAT-----------TG--CTT--TAT------------------------------------------------------------------------------------------AATAAATTAAATAAAAGTGA-----------------------------------------AAATCT--AAGAATTGGTGGAAAGTTTATATACATTTC-TTGAAGAACTGAA----------------------------------------------------GTGATATTGTTTTAAAACTCTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------------TAAATATTAATACCT-C----CTTTTTT-----CGTCGACAGACCAGCTATACTGACAAAGGAACTAAAGTAAGTCCAAAA------TA-----TATTCC-------SizeHit CountTotal NormTotal
No Reads
dp5
TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATGT------GAAAAGTGTT---CCAAAG--GAAAAG----------------------------------------------------------------------------------------------------------------------AACCAACGTGGCTGTGC-GTGAAATAGTGATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATATTTT------------------------------------------------------------------------------GGCTGATCCTTTCACGGATATTTGAAATCTCTATTGAATTAAACATCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAAAGTTATATTGTGATGACGATGACCCATCTATCTTT----AATATTGTAGATCCCTAACCTAT----------------------------------------------------TTTTT----CCATTCCATT-------TCCGCTGTGCTAATAGACCAGCTATACTGACAAAGGAACCAAAGTAAGACCTAAT-G----AA-----AATT-CACTA-CASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........CGCGTGTGAGGAGAGGATTTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
droPer2
TTA-------TCGCGTGTGAGGAGAGGATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAATTTTTAAACGCGTGTGAGGTGAAAATTTGCATAAATTGAGTCTGAGTGATAATGGTAAATTT---TCCATGAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCT--------------------------------------------------------------GTC--------------------------------------------------TCATTACCATCAATTAAAAGTAGAAATCA--AACTATATATAGTATGAATTTAAA-----CT------------------------------------------------------TTCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCATAATC------------------------------ACATTATTTCTATTATTGAATGATATAATATGTTATCTATGACTTAAATATATTTTTCGGA-------------------------------------------------------------------------------------------T----ATTGC-----CAAACACAGACCAGCTATACTGACAGAGGAACCAAAGTGAGTGAT--TTAAC--CA-----TGGATG-----AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................ATAAATTGAGTCTGAGTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................................ATAAATTGAGTCTGAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............................GCATAAATTGAGTCTGAGTGATAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATACTGACAGAGGAACCAAA......................................2411.00100001
...................................AAATTGAGTCTGAGTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.................................ATAAATTGAGTCTGAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
ATA-------CCGCGTGTGAGGAAGAGTTTTGCATAAATTGAGTCTGAGTGATAATGGTAAAAAA---TATT-------T-----------------------------------------------------------------------------------------------------------------------------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTAAGTGAAATATAAAT--GTTATCAGACTGAAAGAAAGTG--------AAGAAGATTGCCAGAA------------TAA---------A-------CATATTACACAAAAATATATTACAATAAATGAGTGCTGGAAATTTGAATTTCCTGCATATACTAA-TCT--CAA------------------------------------------------------------------------------------------------------GAGGGAGGATATAGAAGTGTTTACTC-------------------------------------------------------------TCTG----ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----AAAATTGATG---------------------------TTTTTATACTTGTCAAAC---------------------------TA---------------------------------------------------------------------AACTAA-----------------------------------------------------CTTCTTTCTTTAA--CTTAAT--GCT-------TCACCATAGACAAGCTATATTGACAAAGGAACCAAAGTGAGTACA---------CA-----TATCGA-----AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................ATAAATTGAGTCTGAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTACAATAAATGAGTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
................GTGAGGAAGAGTTTTGCATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
...............TGTGAGGAAGAGTTTTGCATAAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATGAGTGCTGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
ATA-------ACGCGTGTGAGGAAGAGTTTTGCATAAATTGAGTCTGAGTGATAATGGTAAAGAT-TTGCTTGTGAATATG---CCAAGA--GTAGT-------------------------------------------------------------------------------------------------------------------TATATAAT---CCGACAAAGT-GAAGGAACTCACTATGAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTATGAAT-----------------------------------------------------------------------------------GACTAAGGAAATACCAAG-ACAAATATATTGATCGTCACTTAAAA--------------------------------------------------------------------------GTTAATTTATGTCTACCTAAATCTGCATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCA---GTCAAAC---------------------------TA---------------------------------------------------------------------AACCTAT----------------------------------------------------TACTTTCTTTTGCT--C----TTATCTT-----TCTCTATAGACCAGCTATACTGACAAAGGATCCAAAGTAAGCAAT--TCATA--TA-----TATTTT-----AASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................GTGAGGAAGAGTTTTGCATAAATTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGACAAAGGATCCAAACC....................................2111.001000010
droGri2
ATA-------ACGCGTGTGAGAAGGAGTTTTGCATCAATTGAGTCTGAGTGATAATGGTAATGAA---TCTG-------TG---A----T--GTTATA----------------------------------------------------------------------------------------------------------------------TAACGCATAATAAATAT-G-------TGAA--TTAAAATGCATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------AAGTG--------AAG-----TGATGAAC------------TAA---------A-------CCTGCTTTCCA-------------------------------ACAGAAAACGT---------TG--CTCCATTCTAAAGATTTTTTAGTGAATTATTAATTGTACTTCTAGAATTCTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------------------------------------GTGATATTTGTTCATTCAGCTTTT-----------------------------------------------------------------------ATTCAAA---------ATCG-----AAAACTACTATTTTATATAATATTAAATTTTACAAAT---TC------TTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TTTAT--TTTTTT--AATT------CCGCAATAGACAAGCTATACTGACAAAGGAACCAAAGTAAGTTCACA----------------TCGT-----AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:12 AM