dsi_1233

AGCACAGGCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAGTCCCAGCCCCAATCTGCCGCCCATTAGAAAAGCACACAATTGAGCATTCGCTGGCGGCACACGTGCCATCGTGCCTCCGTCCAGTGGAGTCTGAACCCATTGAACTCATTGAGCACTCTGTGTTTTCTTTTCAGCCGGTGATGGAGGACGAGTACGTCAAGAGCAAGGGGCAATCCAATGGTGC ************************************************...(((....)))..((..(((.......)))..))......((((((.(((((...(((..(((((((((((..((((......))))...))).))))))))................(((...)))..))))))))...))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries
.........................................................................................................................................................................................................................GTACGTCAAGAGCAAGGGGC.............	20	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................GAGGACGATTACGTCAAGAGCAAGGGGC.............	28	1	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................TCAAGAGCAAGGGGCAATCCAATGG...	25	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................GAGGACGACTACGACAAGAGGA...................	22	3	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................GTACGTCAAGAGCAAGGGGCA............	21	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................TGCCGGTGATGTAGGACGAGTACGTCAAG.......................	29	2	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................ATTGAACTCATTGAGCACT...................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................................................................................CCCATTGAACTCATTGAGCACTC..................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................................................................TGTGTTTTCGTTTCAGCTGATGA...........................................	23	3	2	0.50	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................TGATGGAGGACGAGTACGTTTT........................	22	3	2	0.50	1	0	0	0	0	0	1	0
.........................................................................................TTAGAAAAGCACGGAACTGAGC...........................................................................................................................................	22	3	2	0.50	1	0	0	0	0	1	0	0
.............................................................................................................GCATTCGCTGTCGGCACAG..........................................................................................................................	19	2	4	0.25	1	1	0	0	0	0	0	0
.....TGGCGAGGGACGTTTCACT..................................................................................................................................................................................................................................	19	3	7	0.14	1	0	1	0	0	0	0	0
........................................AGCCGGATGGGAAGG...................................................................................................................................................................................................	15	1	9	0.11	1	0	0	0	1	0	0	0
.......................................................................................................................GCGGGACACGTGACATCCT................................................................................................................	19	3	10	0.10	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................GCCGGTGATAGAGCACG..................................	17	2	13	0.08	1	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................GTACGTCAAGAGAAGG.................	16	2	14	0.07	1	0	0	0	0	1	0	0
........CGAGGGACGTTTCACT..................................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0

TCGTGTCCGCCCCCTGCAAAGTTAATCGCGAGTGTACACTTCGGCCTACGCTTCCGGGTTCGGGTCAGGGTCGGGGTTAGACGGCGGGTAATCTTTTCGTGTGTTAACTCGTAAGCGACCGCCGTGTGCACGGTAGCACGGAGGCAGGTCACCTCAGACTTGGGTAACTTGAGTAACTCGTGAGACACAAAAGAAAAGTCGGCCACTACCTCCTGCTCATGCAGTTCTCGTTCCCCGTTAGGTTACCACG ************************************************...(((....)))..((..(((.......)))..))......((((((.(((((...(((..(((((((((((..((((......))))...))).))))))))................(((...)))..))))))))...))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	M023 head
...................................................................GGCTCGGGGTTAGACG.......................................................................................................................................................................	16	1	3	0.33	1	1	0	0	0
..................................................................TTAGTCGGGGTTAGACGGCGG...................................................................................................................................................................	21	3	4	0.25	1	0	1	0	0
................................................................................................................AAGCGACTGCCGTGTG..........................................................................................................................	16	1	7	0.14	1	1	0	0	0
.......................................................GGGCTCGGGTCAGGGTCT.................................................................................................................................................................................	18	2	9	0.11	1	0	0	1	0
.....................................................CCGGGTTCGTGTCAGGGTT..................................................................................................................................................................................	19	2	10	0.10	1	0	0	0	1
....................................................................................................................................................................................TGAGACGCAAAAGAA.......................................................	15	1	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3r:260614-260863 -	dsi_1233	AGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-CCCAG-------CCCC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAGCACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTGGC-G--GC--ACACGTGCCATCGTG----------------------------------------CCTCCGTC-C---AGTGG-----------AGTCTGAACCCAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTTCAGCCGGTGATGGAGGACGAGTACGTCAAGAGCAAGG------------------GGCAATCCAATGGTGC---
droSec2	scaffold_6:398351-398600 -		AGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATTCGAAGGCCCAAGCCCAG-T-CCCAG-------CCCC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAGCACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTGGC-G--G--CACACGTGCCATCGAG----------------------------------------CCTCCGTC-C---AGTGG-----------ATTCTGAACTTAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTTCAGCCGGTGATGGAGGACGAGTACGTCAAGAGCAAGG------------------GGCAATCCAATGGTGC---
dm3	chr3R:292516-292757 -		AGCATAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-CCCAG-------C-CC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAGCACA-------------------------------T--GGGCGG------CATG-------------T---------------------TC---GCTGCC-A--G--CACACGTGCCAT------------------------------------------------CGTC-C---AGTGG-----------AGTCTGAACCCAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTTCAGCCGGTGATGGAGGACGAGTACGTCAAAAGCAAGG------------------GGCAATCGAATGGTGC---
droEre2	scaffold_4770:639798-640052 -		CGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-CCCAG-------TCCCACTCC------------------------------------------------------CAGCC------------------------------------CCAAT----C---------------------TGCCGCCCATTAGAAAAACACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTCAT----GCACACACGTGCCGT------------------------------------------------CGTC-C---AGTGC-----------AGCCTGAACCTAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTCCAGCCGGTGATGGGGGACGAGTACGTCAAAAGCAACG------------------GGCAATCTAATGGTGC---
droYak3	3R:672498-672734 -		A-------GCGGGGGATGTTTCAATTAGCGCTAGCATGTGAAGCCGGATGCGATGGTCCAAGCCCAG-T-CCCAG-------CCCC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAACACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTCA--G--GCACACACGTGCCAC------------------------------------------------CGTC-T---AGTGC-----------AGTCTAAACCCAT--TGA-----------ACT----CATT-GAACAC------TC-TTTG---------TTTT--------CGTTTCAGCCGGTGATGGAGGACGAGTACGTAAAAAGCAACG------------------GGCAATCTAATGGTGC---
droEug1	scf7180000409759:234758-235018 -		AGCACAG----GGGGGCGTTTCAATTAGCGCTCAGATGTGAAGCCGGATGCGAAGGCCTAAGCCCAA-G-CCCGG-------ACCCAGTCC-AGTCC------------------------------------------CCATCGCAATC------------------------------------CCAAT----C---------------------TGCTGCCCATTAGAAAAGCACAC---A------------------------AAT--GAGCAT---------------------------------------------TT---GCTATC-G--GCACACACGTGCCAA------------------------------------------------TGTC-C---ATTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATA-AAGCAA------TC-TGTG---------TTCT--------CTTTGCAGCCTGTGATGGAGGAGGAGTACGTAAAGATAAACG------------------GGCATGCCAATGGTGC---
droBia1	scf7180000302098:140378-140624 +		AGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCTAGGTCCGA-T-CTCAG-------CCCC------------------------------------------------------------AATC------------------------------------CCAAT----C---------------------TGCTGCCCATTAGAAAAGCACAC---A------------------------ACT--GAGCAT---------------------------------------------TT---GCTGGC-G--GCACACACGTGCCAA------------------------------------------------CATG-T---GTTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATT-GAGCTG------TC-TGTC---------TTCT--------CTTTCTAGCCTGTGATGGAGGACGAGTACGTCAAGAGCAACG------------------GGCATGCGAATGGTGC---
droTak1	scf7180000415526:37326-37584 +		AGCACAG-GCGGGGGACGTTTCAATTAGCGCTAACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CTCAG-------TCTAAGTCCCAATCC------------------------------------------------CAATC------------------------------------CCAAT----C---------------------TGCTGCCCATTAGAAAAGCACAC---A------------------------CAT--GAGCGT---------------------------------------------TT---GCTGGT-G--GCACACACGTGCCAA------------------------------------------------CGTC-C---ATTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATT-GAACAA------TC-TGTA---------TTCT--------CTTTGCAGCCTGTGATGGAGGACGAGTATGTCAAGAGCAACG------------------GGCATGCGAATGCTGC---
droEle1	scf7180000491104:2056020-2056345 -		AGCACTG-GCGGGGGACGTTTCAATTAGCGCTCGCATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CCCAG-------TCCCAATCCCCATTCCCATCCCCATCCCCAT-------------------C-----TCCATCGCAATCTCCATCCCAATCTCCGTACTCATACCCATCCCCATACCCAT----C---------------------TGCTGGCCATTAGAAAAGCACAC---A------------------------AAT--GAGCAT---------------------------------------------TTA--GTTGGCGG--GCACACACGTGCCGT------------------------------------------------CGGC-C---ATTGG-----------AGTCTGAACTCAACCCGA-----------ACT----GATT-GAACAA------TC-TGCG---------TTCT--------CTTTGCAGCCTGTAATGGAGGACGAGTACGTCAAGAGCAACG------------------GGCATGTCAACGGGGC---
droRho1	scf7180000770739:16236-16500 +		AGCAAAG-GCGGGGGACGTTTCAATTAGCGCTCGCATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CCCAG-------TCCCAATCCCCATCCCCATAC------------------------------------------CTATC------------------------------------CCCAT----C---------------------TACTGGCCATTAGAAAAGCACAC---A------------------------AAT--AAGCAT---------------------------------------------TT---ACTGGC-G--GCACACACGTGCCAT------------------------------------------------CGGC-C---ATTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATT-GAACAT------TT-TGCG---------TTCT--------CTTTGCAGCCTGTGATGGAGGACGAGTACGTAAAGAGCAACG------------------GGCATGCCAATGGTGC---
droFic1	scf7180000454096:1432643-1432929 -		GACTCAG-GCGGGGGACGTTTCAATTAGCGCGCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CCCAG-------TCCCAGTCGCAGTCCCAGTCC-GA------TTTCGAGTCCAAGTCCGAGTC-----CGAGTCGCAATC------------------------------------CCAAT----C---------------------TGCCGCCCATTAGAAAAGTACAC---A------------------------TGT-----------------------------------------------------TC---GCTTGT----GCCGACACGTGCCGA------------------------------------------------CGCA-G---AGCGG-----------AGTCCGAAC-----CCGA-----------TCT----CACC-GAGCT-------TT-TGTG---------TTCT--------CTTTGCAGCCCGTGATGGAGGACGAGTACGTGAAGAGCAACG------------------GGCATGCCAACGGAGG---
droKik1	scf7180000302475:392863-393158 +		AACGCTG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-TCCAA-------TCCC------------------------------------------------------------------------------------------------------AAT----CGGCTAGTCTCTGCCGCTGCGGGGCTGCCCATTAGAAAAGCACAC---ACA----------------------GATGAGAGCTT---------------------------------------------TT---ACTAGC-G--GCACACACGTGCCAATGTGGCAA--------------------------------AGTGCCAAAGTATAAGCAGTCC-----------AATCCGTTTCCAA--CGA-----------ACT----CATCCGAGCAATATTTCTC-TTTT---------CTTT--------TTCTACAGCCCGTCATCGAGGACGAGTACGTGAAGAGCAACG------------------GTCATGCCAATGACAG---
droAna3	scaffold_13340:15681735-15681977 +		AACGCCA-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCCAGTCCCCAGACCCCAGC-CCTAGCTACTAC-----------------------------------------------------------------------------------------------------------CCTTGCCCCTGC--AGC---------------------------------------------------------------------------------------------------------------TGGC-ACTGCGCCCACGTGCCC----------------------------------------------CGATGTT-T---ATCGA-----------AGCTCGAGT-----AT-----CATAACTGAATGACTGAGA-ATATAT------TG-TGTG---------TCTT------ATCTTTGCAGCCCGTATTGGAGGATGAGTACGTGAAGAGCAATG------------------GACACACCAT---------
droBip1	scf7180000396708:4355272-4355527 -		AACGCCA-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGTCCAAGCCCCA-G-CCCCA-------TCTCCAGCCACTGC-----------------------------------------------------------------------------------------------------------CCTTGCCCCTGCC-AG--TTCCATTAGAAAAATACAC---ATA----------------------AAT--GAGCTT---------------------------------------------TTTTTACCCTG-G--GCGCCCACGTGCCC----------------------------------------------CGTTGTT-T---ATCGA-----------ATCGCGAGT-----GTAA-----------TT-----------------------T-TGTGTGGTTTTCTCTTT--------CTTTGCAGCCCGTATTGGAGGATGAGTACGTTAAGAGCAATG------------------GGCACACCAT---------
dp5	2:24477776-24478094 +		AGCGCTG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCTAGACCCAA-G-CCTAA-------GCCCAAGCACAAGCC------------------------------------CAAGCATAGGCACAATC------------------------------------CCAATTCTGC---------------------GGCTGTCCATTAGAATGGCACAC---ACACGCAGCTTCGCAGCTTGGCGCAGAT--GAATCT---------------------------------------------CG---GCTCGC-G--GCCTACACGTGT------G----------------------------------------CCGCCGTC-C---GCTGGACACAGTCCTCAGTCTGAAC-----TTGA-----------ACT----TATT-TGGCAA------TCGTTTG---------TTCT--------CTTTGCAGCCCGTGCTGGAGGACGAGTACGTGACGAGGAACGG------------GAACGGGCATGCCGGTGGCGG---
droPer2	scaffold_3:7258774-7259113 +		AGCGCTG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCTAGACCCAA-G-CCCAA-------GCCCAAGCCCAAGCACA------------------------------AGCCCAAGCATAGGCACAATC------------------------------------CCAATTCTGC---------------------GGCTGTCCATTAGAATGGCACAC---ACACGCAGCTTCGCAGCTTGGCGCAGAT--GAATCT---------------------------------------------CG---GCTCGC-G--GCATACACGTGT------G----------------------------------------CCGCCGTC-C---GCTGGACACAGTCCTCAGTCTGAAC-----TTGA-----------ACT----CATT-TGGCAA------TCGTTTG---------TTCT--------CTTTGCAGCCCGTGCTGGAGGACGAGTACGTGACGAGGAACGGGAACGGGAACGGGAACGGGCATGCCGGTGGCGGCGG
droWil2	scf2_1100000004943:2885338-2885427 +		AACGCTC-GCGGGGGACGTTTCAATTAGCGCGCACATGTGAAGCCGGATGCGAAGGCCTAATCGCAA-T-C----------------------------------------------------------------------------------------------------------------------------------------------------ATGTCCATTAGAAAAGCATAC---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13047:9320902-9321177 +	dvi_16142	AACACTGTGCGGGGGACATTTCAATTAGCGTAAACATGTGAAGCCGGATGCGAAGGCCCAATCATAT-T-G---------------------------------------------------------------------------------------------------------------------------GC---------------------TGCTGGCCATTAGGAAGGCTGTGTGCCTT----GC----------------TTT--GAACTTTAGCTGGAGGCC---------AGTTCCAAGGGGGTGTTGAGGCAGGA---GAGAGC-G--GCAGACACGTGCT--------------------------------------------------CGTC-A---AA---------------------AA-----CGAATCTTACAGCATATT----AATT----TAA------TC-TTTA---------TTATCTACATACACTTGCAGCCCGTTTTGGAGGATGAATATGTGAATAGCAATG------------------GGCATGTGAATG---C---
droMoj3	scaffold_6540:31313950-31314246 -		AACACTACGCGGGGGACGTTTCAATTAGCGAGAACATGCGAAGCCGGATGCGAAGGCCCAATCATAT-T-G---------------------------------------------------------------------------------------------------------------------------GC---------------------TGCTGGCCATTGGCAAGGCACAC---AGC----GC----------------TTT--GAACTCTAGCTAGAGATCTTAGAATAAGACT--------------------GC---AA-----G--GGGGGCACGTGCTCA----GCAAAAAAATAATAATAATAATAAAATAAATAAAGTAGTGACAAAGTA-A---AGCAT-----------CGACTGAAA-----TTAA-----------TTG----CATC-TATTT-------TCAATTG---------G-TC--------AATTGCAGCCCGTTTTGGACGATGAATATGTGAATAGCAACG------------------GGCTTGCGAATGG------
droGri2	scaffold_14906:3929251-3929363 -		AACATAACGCGGGGGACGTTTCAATTAGAGTGAACATGTGAAACCGGATGCGAAGGCCCAATCAT----------------------------------------------------------------------------------------------------------------------------AT-CGGC---------------------TGCTAGCCATTAGGAAGGCACAC---AGC----GC----------------TTT--GAACTT---------------------------------------------TT---GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-CCCAG-------CCCC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAGCACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTGGC-G--GC--ACACGTGCCATCGTG----------------------------------------CCTCCGTC-C---AGTGG-----------AGTCTGAACCCAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTTCAGCCGGTGATGGAGGACGAGTACGTCAAGAGCAAGG------------------GGCAATCCAATGGTGC---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTCAAGAGCAAGG------------------GGC................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGAGCAAGG------------------GGCAATCCAATGG......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTCAAGAGCAAGG------------------GGCA...............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGA-----------ACT----CATT-GAGCAC------T..........................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAT--TGA-----------ACT----CATT-GAGCAC------TC-........................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGAGGACGAGTACGTTTT.............................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

AGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATTCGAAGGCCCAAGCCCAG-T-CCCAG-------CCCC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAGCACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTGGC-G--G--CACACGTGCCATCGAG----------------------------------------CCTCCGTC-C---AGTGG-----------ATTCTGAACTTAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTTCAGCCGGTGATGGAGGACGAGTACGTCAAGAGCAAGG------------------GGCAATCCAATGGTGC---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................AT----C---------------------TGCCGCCCATTAGAAAAG................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTCAAGAGCAAGG------------------GGC................	20	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGGAGGACGAGTAC..................................................	19	1	1.00	1	0	0	1	0

dm3

AGCATAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-CCCAG-------C-CC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAGCACA-------------------------------T--GGGCGG------CATG-------------T---------------------TC---GCTGCC-A--G--CACACGTGCCAT------------------------------------------------CGTC-C---AGTGG-----------AGTCTGAACCCAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTTCAGCCGGTGATGGAGGACGAGTACGTCAAAAGCAAGG------------------GGCAATCGAATGGTGC---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGAGGACGAGTACGTCAAAAGC.........................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGACGAGTACGTCAAAAGC.........................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGAGGACGAGTACGTCAAAAGCA........................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGGAGGACGAGTAC..................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGAGGACGAGTACGTCAAAAG..........................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGTCAAAAGCAAGG------------------GGC................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGACGAGTACGT................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................CCATTAGAAAAGCACA-------------------------------T--GGGCGG------CATG-------------T---------------------.......................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGAGTACGTCAAAAGCAAGG------------------GGCA...............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGGACGAGTACGT................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------CGTC-C---AGTGG-----------AGTCTGAACCCAT--TGA-----------...................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGACGAGTACGTCAA.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTCAAAAGCAAGG------------------GGC................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGGACGAGTACGTCAAA............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATGGAGGACGAGTACGTCAA.............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GCC-A--G--CACACGTGCCAT------------------------------------------------CGTC-....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-CCCAG-------TCCCACTCC------------------------------------------------------CAGCC------------------------------------CCAAT----C---------------------TGCCGCCCATTAGAAAAACACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTCAT----GCACACACGTGCCGT------------------------------------------------CGTC-C---AGTGC-----------AGCCTGAACCTAT--TGA-----------ACT----CATT-GAGCAC------TC-TGTG---------TTTT--------CTTTCCAGCCGGTGATGGGGGACGAGTACGTCAAAAGCAACG------------------GGCAATCTAATGGTGC---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACG------------------GGCAATCTAATGGTGC---	22	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCAACG------------------GGCAATCTAATGGTGC---	27	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTCAAAAGCAACG------------------GGCAATCT...........	25	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGTCAAAAGCAACG------------------GGC................	21	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTGATGGGGGACGAGTA...................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGGACGAGTACGTCAAAAG..........................................	23	1	1.00	1	1	0	0	0	0	0	0

droYak3

A-------GCGGGGGATGTTTCAATTAGCGCTAGCATGTGAAGCCGGATGCGATGGTCCAAGCCCAG-T-CCCAG-------CCCC------------------------------------------------------------------------------------------------------AAT----C---------------------TGCCGCCCATTAGAAAAACACAC---A------------------------ATT--GAGCAT---------------------------------------------TC---GCTCA--G--GCACACACGTGCCAC------------------------------------------------CGTC-T---AGTGC-----------AGTCTAAACCCAT--TGA-----------ACT----CATT-GAACAC------TC-TTTG---------TTTT--------CGTTTCAGCCGGTGATGGAGGACGAGTACGTAAAAAGCAACG------------------GGCAATCTAATGGTGC---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGTACGTAAAAAGCAACG------------------GGC................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTAAAAAGCAACG------------------GGC................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...................................................GATGGTCCAAGCCCAG-T-CCCAG-------CCCC------------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACG------------------GGCAATCTAATGGTGC---	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACGTAAAAAGCAACG------------------GG.................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAGTACGTAAAAAGCAACG------------------GGC................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACG------------------GGCAATCTAATGGTGC---	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AGCACAG----GGGGGCGTTTCAATTAGCGCTCAGATGTGAAGCCGGATGCGAAGGCCTAAGCCCAA-G-CCCGG-------ACCCAGTCC-AGTCC------------------------------------------CCATCGCAATC------------------------------------CCAAT----C---------------------TGCTGCCCATTAGAAAAGCACAC---A------------------------AAT--GAGCAT---------------------------------------------TT---GCTATC-G--GCACACACGTGCCAA------------------------------------------------TGTC-C---ATTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATA-AAGCAA------TC-TGTG---------TTCT--------CTTTGCAGCCTGTGATGGAGGAGGAGTACGTAAAGATAAACG------------------GGCATGCCAATGGTGC---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCACAG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCTAGGTCCGA-T-CTCAG-------CCCC------------------------------------------------------------AATC------------------------------------CCAAT----C---------------------TGCTGCCCATTAGAAAAGCACAC---A------------------------ACT--GAGCAT---------------------------------------------TT---GCTGGC-G--GCACACACGTGCCAA------------------------------------------------CATG-T---GTTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATT-GAGCTG------TC-TGTC---------TTCT--------CTTTCTAGCCTGTGATGGAGGACGAGTACGTCAAGAGCAACG------------------GGCATGCGAATGGTGC---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCACAG-GCGGGGGACGTTTCAATTAGCGCTAACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CTCAG-------TCTAAGTCCCAATCC------------------------------------------------CAATC------------------------------------CCAAT----C---------------------TGCTGCCCATTAGAAAAGCACAC---A------------------------CAT--GAGCGT---------------------------------------------TT---GCTGGT-G--GCACACACGTGCCAA------------------------------------------------CGTC-C---ATTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATT-GAACAA------TC-TGTA---------TTCT--------CTTTGCAGCCTGTGATGGAGGACGAGTATGTCAAGAGCAACG------------------GGCATGCGAATGCTGC---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCACTG-GCGGGGGACGTTTCAATTAGCGCTCGCATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CCCAG-------TCCCAATCCCCATTCCCATCCCCATCCCCAT-------------------C-----TCCATCGCAATCTCCATCCCAATCTCCGTACTCATACCCATCCCCATACCCAT----C---------------------TGCTGGCCATTAGAAAAGCACAC---A------------------------AAT--GAGCAT---------------------------------------------TTA--GTTGGCGG--GCACACACGTGCCGT------------------------------------------------CGGC-C---ATTGG-----------AGTCTGAACTCAACCCGA-----------ACT----GATT-GAACAA------TC-TGCG---------TTCT--------CTTTGCAGCCTGTAATGGAGGACGAGTACGTCAAGAGCAACG------------------GGCATGTCAACGGGGC---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAAAG-GCGGGGGACGTTTCAATTAGCGCTCGCATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CCCAG-------TCCCAATCCCCATCCCCATAC------------------------------------------CTATC------------------------------------CCCAT----C---------------------TACTGGCCATTAGAAAAGCACAC---A------------------------AAT--AAGCAT---------------------------------------------TT---ACTGGC-G--GCACACACGTGCCAT------------------------------------------------CGGC-C---ATTGG-----------AGTCTGAAC-----CCGA-----------ACT----CATT-GAACAT------TT-TGCG---------TTCT--------CTTTGCAGCCTGTGATGGAGGACGAGTACGTAAAGAGCAACG------------------GGCATGCCAATGGTGC---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GACTCAG-GCGGGGGACGTTTCAATTAGCGCGCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAA-G-CCCAG-------TCCCAGTCGCAGTCCCAGTCC-GA------TTTCGAGTCCAAGTCCGAGTC-----CGAGTCGCAATC------------------------------------CCAAT----C---------------------TGCCGCCCATTAGAAAAGTACAC---A------------------------TGT-----------------------------------------------------TC---GCTTGT----GCCGACACGTGCCGA------------------------------------------------CGCA-G---AGCGG-----------AGTCCGAAC-----CCGA-----------TCT----CACC-GAGCT-------TT-TGTG---------TTCT--------CTTTGCAGCCCGTGATGGAGGACGAGTACGTGAAGAGCAACG------------------GGCATGCCAACGGAGG---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACGCTG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCAG-T-TCCAA-------TCCC------------------------------------------------------------------------------------------------------AAT----CGGCTAGTCTCTGCCGCTGCGGGGCTGCCCATTAGAAAAGCACAC---ACA----------------------GATGAGAGCTT---------------------------------------------TT---ACTAGC-G--GCACACACGTGCCAATGTGGCAA--------------------------------AGTGCCAAAGTATAAGCAGTCC-----------AATCCGTTTCCAA--CGA-----------ACT----CATCCGAGCAATATTTCTC-TTTT---------CTTT--------TTCTACAGCCCGTCATCGAGGACGAGTACGTGAAGAGCAACG------------------GTCATGCCAATGACAG---	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AACGCCA-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCCAAGCCCCAGTCCCCAGACCCCAGC-CCTAGCTACTAC-----------------------------------------------------------------------------------------------------------CCTTGCCCCTGC--AGC---------------------------------------------------------------------------------------------------------------TGGC-ACTGCGCCCACGTGCCC----------------------------------------------CGATGTT-T---ATCGA-----------AGCTCGAGT-----AT-----CATAACTGAATGACTGAGA-ATATAT------TG-TGTG---------TCTT------ATCTTTGCAGCCCGTATTGGAGGATGAGTACGTGAAGAGCAATG------------------GACACACCAT---------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGATGAGTACGTGAA.............................................	21	1	2.00	2	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATGAGTACGTGAAGA...........................................	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGATGAGTACGTGA..............................................	20	1	1.00	1	0	0	0	0	1	0
AACGCCA-GCGGGGGACGTTTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTACGTGAAGAGCAATG------------------GACACACC...........	28	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGACTGAGA-ATATAT------TG-TGTG---------T..........................................................................................	26	1	1.00	1	0	0	0	0	1	0

droBip1

AACGCCA-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGTCCAAGCCCCA-G-CCCCA-------TCTCCAGCCACTGC-----------------------------------------------------------------------------------------------------------CCTTGCCCCTGCC-AG--TTCCATTAGAAAAATACAC---ATA----------------------AAT--GAGCTT---------------------------------------------TTTTTACCCTG-G--GCGCCCACGTGCCC----------------------------------------------CGTTGTT-T---ATCGA-----------ATCGCGAGT-----GTAA-----------TT-----------------------T-TGTGTGGTTTTCTCTTT--------CTTTGCAGCCCGTATTGGAGGATGAGTACGTTAAGAGCAATG------------------GGCACACCAT---------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCGCTG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCTAGACCCAA-G-CCTAA-------GCCCAAGCACAAGCC------------------------------------CAAGCATAGGCACAATC------------------------------------CCAATTCTGC---------------------GGCTGTCCATTAGAATGGCACAC---ACACGCAGCTTCGCAGCTTGGCGCAGAT--GAATCT---------------------------------------------CG---GCTCGC-G--GCCTACACGTGT------G----------------------------------------CCGCCGTC-C---GCTGGACACAGTCCTCAGTCTGAAC-----TTGA-----------ACT----TATT-TGGCAA------TCGTTTG---------TTCT--------CTTTGCAGCCCGTGCTGGAGGACGAGTACGTGACGAGGAACGG------------GAACGGGCATGCCGGTGGCGG---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGACGAGGAACGG------------G.......................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGAGTACGTGACGAGGAACGG------------G.......................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAGTACGTGACGAGGA........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGGCATGCCGGTGG......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGACGAGGAACGG------------GAACGGGCA...............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGACGAGTACGTGACGAG..........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTACGTGACGAGGAACGG------------GAA.....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGAACGG------------GAACGGGCAT..............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCGTGCTGGAGGACGAGT....................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGGACGAGTACGTGACGAGG.........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAACGG------------GAACGGGC................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAGGAACGG------------GAACGGGCATGCCGGT........	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGACGAGGAACGG------------G.......................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTACGTGACGAGGAACG.....................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAACGG------------GAACGGGCAT..............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGACGAGGAACGG------------GAA.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGACGAGGAACGG------------GAAC....................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACGG------------GAACGGGCATGCCGGT........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTACGTGACGAGGAACGG------------GA......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGAGGAACGG------------GAACGGGC................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AGAT--GAATCT---------------------------------------------CG---GCTCGC-...........................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCGCTG-GCGGGGGACGTTTCAATTAGCGCTCACATGTGAAGCCGGATGCGAAGGCCTAGACCCAA-G-CCCAA-------GCCCAAGCCCAAGCACA------------------------------AGCCCAAGCATAGGCACAATC------------------------------------CCAATTCTGC---------------------GGCTGTCCATTAGAATGGCACAC---ACACGCAGCTTCGCAGCTTGGCGCAGAT--GAATCT---------------------------------------------CG---GCTCGC-G--GCATACACGTGT------G----------------------------------------CCGCCGTC-C---GCTGGACACAGTCCTCAGTCTGAAC-----TTGA-----------ACT----CATT-TGGCAA------TCGTTTG---------TTCT--------CTTTGCAGCCCGTGCTGGAGGACGAGTACGTGACGAGGAACGGGAACGGGAACGGGAACGGGCATGCCGGTGGCGGCGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGACGAGGAACGGGAACGGG.............................	25	1	4.00	4	3	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGAGGAACGGGAACGGGA............................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGACGAGGAACGGGAACGGG.............................	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGAGGAACGGGAACG...............................	19	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACGGGAACGGGAAC..........................	19	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGAACGGGAACGGGAAC..........................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGAACGGGAACGGG.............................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGACGAGGAACGGGAACGGGA............................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGACGAGGAACGGGAAC................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGTCTGAAC-----TTGA-----------ACT----............................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGACGAGGAACGGGAACGGGAAC..........................	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGGAACGGGAACGGGAACGG..................	24	6	0.17	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAACGGGAACGGGAAC....................	20	20	0.10	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGGAACGGGAACGGG.................	19	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGGAACGGGAACGGG.......................	19	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAACGGGAACGGGA......................	18	20	0.05	1	0	0	0	0	1	0

droWil2

AACGCTC-GCGGGGGACGTTTCAATTAGCGCGCACATGTGAAGCCGGATGCGAAGGCCTAATCGCAA-T-C----------------------------------------------------------------------------------------------------------------------------------------------------ATGTCCATTAGAAAAGCATAC---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................TTCAATTAGCGCGCACATGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..........................AGCGCGCACATGTGAAGCCGGATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0

droVir3

AACACTGTGCGGGGGACATTTCAATTAGCGTAAACATGTGAAGCCGGATGCGAAGGCCCAATCATAT-T-G---------------------------------------------------------------------------------------------------------------------------GC---------------------TGCTGGCCATTAGGAAGGCTGTGTGCCTT----GC----------------TTT--GAACTTTAGCTGGAGGCC---------AGTTCCAAGGGGGTGTTGAGGCAGGA---GAGAGC-G--GCAGACACGTGCT--------------------------------------------------CGTC-A---AA---------------------AA-----CGAATCTTACAGCATATT----AATT----TAA------TC-TTTA---------TTATCTACATACACTTGCAGCCCGTTTTGGAGGATGAATATGTGAATAGCAATG------------------GGCATGTGAATG---C---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGATGAATATGTGAATAGC.........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGCAATG------------------GGCATGTGAATG---....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGAATAGCAATG------------------GGCATGTG...........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATAGCAATG------------------GGCA...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CACTGTGCGGGGGACATTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAATG------------------GGCATGTGAAT........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAATATGTGAATAGCAATG------------------...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGAATAGCAATG------------------GGCAT..............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACACTACGCGGGGGACGTTTCAATTAGCGAGAACATGCGAAGCCGGATGCGAAGGCCCAATCATAT-T-G---------------------------------------------------------------------------------------------------------------------------GC---------------------TGCTGGCCATTGGCAAGGCACAC---AGC----GC----------------TTT--GAACTCTAGCTAGAGATCTTAGAATAAGACT--------------------GC---AA-----G--GGGGGCACGTGCTCA----GCAAAAAAATAATAATAATAATAAAATAAATAAAGTAGTGACAAAGTA-A---AGCAT-----------CGACTGAAA-----TTAA-----------TTG----CATC-TATTT-------TCAATTG---------G-TC--------AATTGCAGCCCGTTTTGGACGATGAATATGTGAATAGCAACG------------------GGCTTGCGAATGG------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATAGCAACG------------------GGCT...............	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATAGCAACG------------------GGCC...............	19	1	1.00	1	0	0	0	0	1	0
.........CGGGGGACGTTTCAATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGACGATGAATATGT................................................	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATATGTGAATAGCAACG------------------GGCTT..............	27	1	1.00	1	0	0	0	0	0	1

droGri2

AACATAACGCGGGGGACGTTTCAATTAGAGTGAACATGTGAAACCGGATGCGAAGGCCCAATCAT----------------------------------------------------------------------------------------------------------------------------AT-CGGC---------------------TGCTAGCCATTAGGAAGGCACAC---AGC----GC----------------TTT--GAACTT---------------------------------------------TT---GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_1233

3r:260664-260813 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.0	-34.5	-34.5