ID:

dsi_12325

 Coordinate:

3r:17236961-17237110 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.5

Flybase annnotation

CDS [3r_17236339_17236988_+]; three_prime_UTR [3r_17236989_17237085_+]; exon [3r_17236339_17237085_+]

No Repeatable elements found

Sense Strand Reads

###############################################################################################################################################################################---------------------------------------------------------------------------
CACGGCGATTGCCAGCGAATAGATTCGGACGAGGATCTGGACACGGAAAGGTGTGTTCTCGGGGGAAACAAGCATTAAAACCGAACACTTTTGAAGCTGCACTACGCTTATTAAGATTATGGATAAAGACTGTCTATAGAGTTAAGAAAAGTAGACCTACAATCTAAAAATAAATTTAAGGTTTTATATAAACTTTAGAGCTAATCGAGTCAACTATAATGCATAAATCAATAAGGATATTTTTTAAAAT
*****************************************************************************************************((((.....((((..(((((((((.....)))))))))..)))).....))))...........************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................CTACGCTTATTAAGATTATG................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CATAAATCAATAAGGACATTTT....... 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0
............................................................................................................................AAAGACTGTCTATAGA.............................................................................................................. 16 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................GATTATGGATAAAGACTGTCT................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TTTGAAGCTGCACTACGCTTATTAAG....................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................AAAGACTGTCTATAGAGTTAAGAAAAG................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................AAGAAAAGTAGACCTACAATCT..................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................ATGGATAAAGACTGTCTATAGAGTTAAGAAAAG................................................................................................... 33 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................TCAACTATAATGCATAAATCAATAAGGA............. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................GATTCGGACGAGGATCTGGACACGGA........................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................TTATGGATAAAGACTTTCTATAGAGT............................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................TATTAAGATTATGGATAAAGACTGTC.................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATATAAACTTTAGAGCTAATCGA.......................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................ACGAGGATCTGGACACGGAAAGGTGG.................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................TCTCGGGGGAAAGAGGCATTA............................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................AAAGACTGTCTATAGAGTT........................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................TAAGAAAAGTAGACCTACAATCT..................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............CAGCGAATAGATTCGGACGAGGATC..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TTATTAAGATTATGGATAAAGACTG...................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TTATATAAACTTTAGAGCT................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................AAAGACTGTCTATAGAGTTAAGAAAA.................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............CAGCGAATAGATTCGGACGAG......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................TTCGGACGAGGATCTGGAC................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................TCTGGAATCGGAAAGGAGTGT.................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................GATGAAGAATGTCTCTAGA.............................................................................................................. 19 3 16 0.13 2 0 0 0 0 0 0 0 0 0 2
........................TCGGTGGAGGATCTGGAC................................................................................................................................................................................................................ 18 2 15 0.07 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................GGATAAAGATTGGCTCTAG............................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTGCCGCTAACGGTCGCTTATCTAAGCCTGCTCCTAGACCTGTGCCTTTCCACACAAGAGCCCCCTTTGTTCGTAATTTTGGCTTGTGAAAACTTCGACGTGATGCGAATAATTCTAATACCTATTTCTGACAGATATCTCAATTCTTTTCATCTGGATGTTAGATTTTTATTTAAATTCCAAAATATATTTGAAATCTCGATTAGCTCAGTTGATATTACGTATTTAGTTATTCCTATAAAAAATTTTA
*************************************************************************************((((.....((((..(((((((((.....)))))))))..)))).....))))...........***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.................................................................................TCTTGTGAAAGCTTCGACGGGAT.................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................................................TATTTAGTTAGTCCGATAA......... 19 2 3 0.67 2 0 0 2 0 0
..........................................................................................................................................................TGGATGTTTCATTTTTATATAAATT....................................................................... 25 3 2 0.50 1 0 1 0 0 0
..........................................................................................................................................................TGGATGTTTCATTTTTATATAAAT........................................................................ 24 3 3 0.33 1 0 1 0 0 0
..............................................................................TTGTCTTGTGAAAACTTC.......................................................................................................................................................... 18 1 4 0.25 1 0 0 0 1 0
............................................................................................................................................................................................TTTTTAAATCTCGATTAG............................................ 18 2 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 02:42 PM