ID:

dsi_12303

 Coordinate:

2l:11695597-11695746 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.4 -5.8 -5.8 -5.6

Flybase annnotation

five_prime_UTR [2l_11695222_11695556_+]; CDS [2l_11695557_11695596_+]; exon [2l_11695222_11695596_+]; intron [2l_11695597_11699637_+]

Repeatable elements

NameClassFamilyStrand
(CAT)nSimple_repeatSimple_repeat+
mature
star
  1. dsi_12303  2l:11695669-11695687 +
  2. 3l:20500448-20500466 +
  3. x:15615239-15615257 +

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGTACCGAGATGACGCAACAGCCGCAATGGGGCATAAGCCTCTCGAGGTGTAAGTGTGCCACATCCTTCGATCGATCTATGGGATATCACAACCATCAACACCACTGCCACCACCATCATCATCACATCATCATCATCATAATCATGAAATGGCCATAAGGAAGTGCTGCGTGCGCCGGTGTATTCTGAATGCGAATTGTGCGGATCGTTGAACCTGCGATCGTTCGGGGGGCATTTTCGAGTGGTAGT
**************************************************************************************************************************...............................((...........((.....))))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................................GTGCGGATCGTTGAACCTGC............................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0
............................................................................................................................................................ATAAGGAAGTGCTGCGTGCGC......................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................CGCAATGGGGCATAAGCCTCTCGAGG......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................CTGAATGCGAATTGTGCGGAT........................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................TGATCATGAACTGGCCATAA.......................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................ATGATGCGGATCGTTGAAC................................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0
..........................................................................................................................ATCACATCATCATCATCAT............................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................GATAACACGACCATCAAC..................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCATTTTCGAGAGGT... 16 1 5 0.20 1 1 0 0 0 0 0 0 0
..........................................................................................................................ATCACATCATCATCATCATCATCA........................................................................................................ 24 1 7 0.14 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTTGAAACTACGATCGT......................... 17 2 7 0.14 1 0 0 0 0 1 0 0 0
...................................TATGACTCTCGAGGTGT...................................................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0
................................................................................................................................TCATCATCATCATAATCA........................................................................................................ 18 0 11 0.09 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................GTGCGCCGGTCTGTTCTGG............................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................CATCGGTCGGGGGGCA............... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
......................................................................................................................................TCATCACAATCATGA..................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................ACACCGCTGCCACCA........................................................................................................................................ 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATCATGGCTCTACTGCGTTGTCGGCGTTACCCCGTATTCGGAGAGCTCCACATTCACACGGTGTAGGAAGCTAGCTAGATACCCTATAGTGTTGGTAGTTGTGGTGACGGTGGTGGTAGTAGTAGTGTAGTAGTAGTAGTATTAGTACTTTACCGGTATTCCTTCACGACGCACGCGGCCACATAAGACTTACGCTTAACACGCCTAGCAACTTGGACGCTAGCAAGCCCCCCGTAAAAGCTCACCATCA
*************************************************************************...............................((...........((.....))))************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 M023
head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
......................................................................................................................GTAGTAGTGTAGTAGTAGTAGTAGTAGT........................................................................................................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................................................................TTAGTAGTGTAGTAGTAGTAGTA............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................AGTAGTAGTGTCGTAGTAGTAGTAGTAGT........................................................................................................ 29 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................TAGTAGTAGTGTAGTAGTAGTAGTAGTAGT........................................................................................................ 30 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................AGTAGTAGTGTAGTAGTAGTAGTA............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................AGTAGTAGTGTAGTAGTAGTAGTAGT........................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................TAGTAGTGTAGTAGTAGTAGTAGTAGTA....................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
............CTGCGTTGTCGGCGTTACCCC......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........AAACTGCGTTGTCGGCGTTACC........................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................AGTAGTGTAGTAGTAGTAGTATTAGT........................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................GTAGTAGTAGTGTAGTAGTAGTAGTAGTAGT........................................................................................................ 31 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................TAGTAGTAGTGTAGTAGTA................................................................................................................... 19 0 3 0.67 2 2 0 0 0 0 0 0 0
...................................................................................................................GTAGTAGTAGTGTAGTAGT.................................................................................................................... 19 0 3 0.67 2 2 0 0 0 0 0 0 0
....................................................................................................................TAGTAGTAGTGTAGTAGTAGTAGT.............................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................GTAGTAGTAGTGTAGTAGTAGTAGT.............................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................................................AGTAGTGTAGTAGTAGTAG............................................................................................................... 19 0 4 0.50 2 2 0 0 0 0 0 0 0
......................................................................................................................GTAGTAGTGTAGTAGTAGTAGT.............................................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................CGGTGGTAGTAGTAGTGTAG........................................................................................................................ 20 1 2 0.50 1 0 0 1 0 0 0 0 0
.........................................................................................................................GTAGTGTAGTAGTAGTAGTGT............................................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................GTGTTGGTCGTTGGTGTGACGGT........................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0
....................................................................................................................TAGTAGTAGTGTAGTAGTAGTAGTGGG........................................................................................................... 27 3 2 0.50 1 1 0 0 0 0 0 0 0
..........................................................................................................ACGGTGGAGGTAGTAGTAGT............................................................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................GTAGTAGTGTAGTAGTAGTAGTGT............................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................GTAGTAGTGTAGTAGTAGTAGTAGT........................................................................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................................TGTAGTAGTAGTAGTA............................................................................................................. 16 0 20 0.35 7 7 0 0 0 0 0 0 0
....................................................................................................................TAGTAGTAGTGTAGTAGTAGT................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................................................................TAGTAGTGTAGTAGTAGTAG............................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................................................................GTAGTAGTAGTGTAGTAGTA................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CCCCGTAAATGCTCGCCA... 18 2 3 0.33 1 1 0 0 0 0 0 0 0
..................................................................................................................TGTAGTAGTAGTGTAGTAGTA................................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0
..........................................................................................................................TAGCGTAGTAGTAGTAGTGT............................................................................................................ 20 2 3 0.33 1 1 0 0 0 0 0 0 0
...............................................................................................................................TAGTAGTAGTAGTATTAGT........................................................................................................ 19 0 7 0.29 2 2 0 0 0 0 0 0 0
.........................................................................................................................CTAGTGTAGTAGTAGTAGTA............................................................................................................. 20 1 4 0.25 1 1 0 0 0 0 0 0 0
................................................................................................................GTAGTAGTAGTAGTATAGTAGTAGTAGTAGT........................................................................................................... 31 3 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................................................AGTAGTGTAGTAGTA................................................................................................................... 15 0 8 0.25 2 2 0 0 0 0 0 0 0
...........................................................................................................................AGAGTAGTAGTAGTAGTATT........................................................................................................... 20 1 5 0.20 1 1 0 0 0 0 0 0 0
.........................................................................................................................GTAGTGTAGTAGTAGTAGTAGTAGT........................................................................................................ 25 1 5 0.20 1 1 0 0 0 0 0 0 0
........................................................................................................TGACGGTGGTGGTAGT.................................................................................................................................. 16 0 5 0.20 1 1 0 0 0 0 0 0 0
...........................................................................................................................AGTGTAGTAGTAGTAGT.............................................................................................................. 17 0 6 0.17 1 1 0 0 0 0 0 0 0
...........................................................................................................CGGTGGTAGTAGTAGTAGTGTCG........................................................................................................................ 23 2 6 0.17 1 1 0 0 0 0 0 0 0
...........................................................................................................................AGTGTAGTAGTAGTA................................................................................................................ 15 0 9 0.11 1 1 0 0 0 0 0 0 0
.........................................................................................................................GTAGTTTCGTAGTAGTAGT.............................................................................................................. 19 2 20 0.10 2 0 0 0 0 2 0 0 0
........................................................................................................................AGTAGAGTAGTAGTAGTAGT.............................................................................................................. 20 1 10 0.10 1 1 0 0 0 0 0 0 0
..........................................................................................GTTGGTCGTTGGTGTGACGGT........................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0 0 0
..............................................................................................................................GTAGTAGTAGTAGTATT........................................................................................................... 17 0 16 0.06 1 1 0 0 0 0 0 0 0
.................................................................................................................TGGTAGTAGTAGTGTC......................................................................................................................... 16 1 17 0.06 1 1 0 0 0 0 0 0 0
.......................................................................................AGAGATGGTAGCTGTGGTG................................................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0 0 0
..........................................................................................................................TAGTGTAGTAGTAGTAGTAGTAGTGA...................................................................................................... 26 3 19 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................AGTGTAGTAGTAGGAG............................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0
.....................................................................................................................AGTAGTAGAGTAGTAGTAGTGT............................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................AGTAGTAGAGTAGTAGTAGTGT............................................................................................................ 22 3 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................GGTAGTAGTAGTGTC......................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................GTAGTAGTAGTAGAATTA.......................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 1 0 0
..........................................................................................................................TATTGTAGTAGTAGTAGTA............................................................................................................. 19 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................TCGCACGGTGGAGGAAG.................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0
...........................................AGCTGCACATTCGCATGG............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1
........................................................................................ATGTTGGGAGTTGTGG.................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................TAGTAGTAGTAGTATT........................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................TAGTAGTAGTGTACT....................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:11695547-11695796 + dsi_12303 TAGTACCGAGATGACGCAACAGCCGCAATGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGATCGATCTATGGGATATCAC------AACCATCAACAC--CACTGCCACCACCATCATCATCA--------------------CATC------ATCA------TCATCATAATCATGAAATGGCCATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCTGAATGCGAATTG-TG-----------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TTC-GGGGGG----CATTTTCGAGT------------GGT--AGT
droSec2 scaffold_16:223046-223288 + TAGTACCGAGATGACGCAACAGCCGCAATGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGA----TCCATGGGATATCAC------AACCATCATCAC--CACTGCCACCACCATCATCATCA--------------------CATC------A---------TCATCATCATCATGAAATGGCCATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCTGAATGCGAATTG-TG-----------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TTC-GGGGGG----CATTTTCGAGT------------GGT--AGT
dm3 chr2L:12027772-12028021 + TAGTACCGAGATGACGCAACAGCCACAATGGGGCATAAGCCTATCGAGGTGTAAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGA----TCCATGGGATATCACAAACACAACCATCA--AC--CACTATCACCACCAACATCATCA--------------------TATC------GTCA------TCATCATCATCATGAAATGGCCATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCTGAATGCGGATTG-TG-----------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TTC-GGGGGG----CATTTTCGAGT------------GGT--AGT
droEre2 scaffold_4929:13385841-13386090 - CAGTCCCGAGATGACGCAACAGCCGCAGTGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACATC-CC-------------------------------------------------------------------------------------------------------------------------AGTGCTATCACC-CCACCACCATCGTCACTCCATCATCATCGCCATCATCATCA----------------------CC------ATCA-CGA--TCACCATCATCATCAAATGGCCATAAGGAAGTGCCGCGTGCGC------------------------------CG--------------------------------CGTGCG--------------------------GAGTATTCAGAATGCGGATTG-TG-----------------TGG-ATCGTTGAACCTGCG-----------ATCG--------T---GAGGGG----CCTTTTCGAGT------------GGT--AGT
droYak3 2L:8447249-8447499 + CAGTCCCGAGATGACGCAACAGCCGCAGTGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACATCCCA-ATCTCCCCCC-------------------------------------------------------------------------------------------------CTCGA---------GTGCTATCAC------CACCGTCA-----------CCATCACCATCTTCATCG--------------------CATC------GTCAT---CA-CATCATCATCATTGTTTGGCCATAAGGAAGTGCCGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCAGAATGCGGATTG-TGTGGAT------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TGA-GGGGGG----CATTTTCGAGT------------GGT--AGT
droEug1 scf7180000409122:417863-418055 + CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAGCCTGTCAAAGTGTAAGTGTTAGCCA-ATGAT-C-----------------------------------------------G-----------------GGGGA------------GT--TGATCCTACCCAG----------------------------------------------------------------------------------------------------TG------------------------------------------------------------TTATCTCAT------------------CTGTATACTCGTATGTATCATCCTCCATATCAGGAAGTGCGGAT---------------------------------------ATTTG-TG-----------------CGG-ATCGTTGAAC-TGCG-----------ATCG--------C---GGGGGG----CATTCTTTAGT------------G-------
droBia1 scf7180000302422:990254-990458 - CAGTCCCGAGATGACTCAACAGCCGCAATGGGGCATCAGCCTGTCGAAGTGTAAGTGTAGT-CCGAGTGC-CCGCAAGGA---------------C-------------------------------------------------------------C---GC-C-----GCGCGCCCTCCCTCGG----C--------------------------------------------------------------------------------CGGGGTCT-------C---A--------------------------------------------CTCCCGCCA------------------------------------------------GGAAGTGCGGGG----------------------------CTCGGAGCGCGGACTG-CGCG---------------CGG-ATCGATGAAC-TGCGGT----------TC-------------G-GGGG----CATTCTCGATCCGACTT-CGCGTGGT--CGG
droTak1 scf7180000415863:204905-205120 - CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAGCCTGTCGAGGTGTAAGTGTTAT-CAGAGAT-------------------------------------CCTATGAA-AATCGAAAAA-----------------------------GGAT--CGC-C-----ATACGATC----------------------------------------------------------------------------------------------------T-------CA-TATCATC--------------------------------------------ATCA------------------------------------------------GGAAGTGCGGAATTC---------------------AGAATTCAGAGTGCGGAATG-TGCGG--------------CGG-ATCGTTGAAC-TGCGAT----------TCG--------C---GGGGCG----CATTCTTGATATAATATCCGAGTGGTTAAAG
droEle1 scf7180000491028:3138777-3138965 - CAGTCCCGAGATGACACAACAACCACAATGGGGCATAAGCCTATCGAGGTGTAAGTGTTGGCCA-ATGGC-CAAAAATAA---------------CAGC----------------------CAAA-----------------------------AAATGAATCCTCTCGGG----------------------------------------------------------------------------------------------------TG------------------------------------------------------------TTATCGTATAA------------------------------------------------GGAAGTGCGGA-----------------------------ATCGGAATCCAGAATG-TG-----------------CGG-ATCAATGAAC-TGCGAT----------CCG--------ATTGAAGGGG----CATTCTTGAGG------------C-------
droRho1 scf7180000761302:111632-111808 - CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAACCTATCGAGGTGTAAGTGTT-GCCA-ATAA--------AAA---------------A-------------------------CAAA-----------------------------AA--GAATCCTATCGGG----------------------------------------------------------------------------------------------------TG------------------------------------------------------------TTAACTTATAA------------------------------------------------GGAAGTGCGGA----------------------------ATCCAGAATGTGGAATG-TT-----------------CGG-ATCGTTGAAC-TGCGAT-----G-CGATCA------------AAGGGG----CATTCTTAAGG------------C-------
droFic1 scf7180000453936:143100-143302 - CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAACCTATCGCGGTGTAAGTGTT-GCCA--A-------AACTCC---------------CAACCAG----A---AAA-AAAAAGA-AAAAGTATTCGATTCG--------------------GGATCCTCTCGGC----------------------------------------------------------------------------------------------------TGTTATCT-------C---ATTCTC--------------------------------------------ATCA------------------------------------------------GGAAGTGCGGAGT----------------------------T-------CAGAATG-TG-----------------CGG-ATCGTTGAAC-TGCG-----------ATCG--------C---G-GGGG----CATTCTTGAGA------------AAC--ATT
droKik1 scf7180000302679:722956-723159 + CAATCCCGAGATGACACAACAGCCACAATGGGGCATAAACCTATCCAGGTGTAAGTGC--CC-A-ATAA--------------------------------------------------------------------------------------------------------------TATGTTA----TCCATG------------------------------------ATTACCAT-------------------CTCGCCA--TAGCG------------------------------------------------------------TTATCTCATAA------------------------------------------------GGAAGCGCCCGG---------------------CAGTGCTTGCGGAATTCGGAATG-CCCT---------------GCG-ATCGTTGAAC-TGAACAGCGACGACGATCG--------C---GGGGCG----AATTCTTGGGG------------CAA--AAT
droAna3 scaffold_12916:9437766-9437930 - CAATCCCAAGATGACTCAACAACCGCAATGGGGCATAAGCTTCTCCAAGTGTAAGTGA--TC-A-AGA-----------------------------------CATC------------AAGAAA-----------------------------GAAT--------------------------------------------------------------------------------------------ATGTTAATCCTCGCCAGG---TG-------------------------------------------------------TGGTGCTCTCACACGA------------------------------------------------GGAAG----------------------------------------------------TG-----------------CAG-ATCGTTGAACTTGT----------TGATCG-------------AGGGG-------TTTAGACCAT----------ATT--TTT
droBip1 scf7180000396728:730865-731070 + CAATCCCACGATGACTCAACAACCACAATGGGGCATAAGCTTCTCCAAGTGTAAGTGA--TC-A-ACGA--------------------------------G----A---AAA-T----A-----------------AGGGAGATAAACCCAAAGAGT--------------------------------------------------------------------------------------------ATCATAATCCTCGCCAGGTGGTG------------------------------------------------------------GTGTCCCACGA------------------------------------------------GGAAGTCCGTG-----------------------------------------CTCG-TG-----------------CCG-ATCGTTGAACTTGT----------CGATCGGGCGTCAGC---G-GGGGTCTCGATTCTTGAGACGTT--------TAT--ACC
dp5 4_group2:928496-928752 - TAATCCCGAGATGACACAACAGCCGCAATGGGGCATAAACCTATCACGGTGTAAGTGT--CC-C-ATGCC-CA-AGCCCCTGCCTTCGGGGGGATCCG----CCATCAAAAGTT-ATTTGGCAAA-----------------------------AACT--TTC-T-----GTGTTATC----------------------------------------------------------------------------------------------------T------------TCCAC--------------------------------------------ATCC------------------------------------------------GTAAACCCCGAGCCCAACTTTGGGAGTGTGCTTTATTGAATAATAAATACGAATCGATGGGGATGGGGTTGGGGCT-GGATACGTTGAAC-TCCG-----------ATC---------------GGAG----CATTCTTGAAA------------TTA--AAT
droPer2 scaffold_8:2967371-2967627 + TAATCCCGAGATGACACAACAGCCGCAATGGGGCATAAACCTATCACGGTGTAAGTGT--CC-C-ATGCC-CA-AGCCCCTGCCTTCGGGGGGATCCG----CCATCAAAAGTT-ATTTGGCAAA-----------------------------AACT--TTC-T-----GTGTTATC----------------------------------------------------------------------------------------------------T------------TCCAC--------------------------------------------ATCC------------------------------------------------GTAAACCCCGAGCCCAACTTTGGGAGTGTGCTTTATTGAATAATAAATACGAATCGATGGGGATGGGGTTGGGGCT-GGATACGTTGAAC-TCCG-----------ATC---------------GGAG----CATTCTTGAAA------------TTA--AAT
droWil2 scf2_1100000004729:1063335-1063399 + ACCACCACCATCACCACCACCGCCACCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCACCATCATTAT----------------CATC------ATCA------TCATCATCATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droVir3 scaffold_12963:13905484-13905541 + CCGAGCCGAGATGACACAACAACCGCAATGGGGCATAAGCTTATCAAAGTGTAAGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:5742140-5742354 - CACGGCTGAGATGACACAACAACCGCAATGGGGCATAAGTTTATCAAAGTGTAAGTGC--AA-T-A--A----------------------GAAT-----------CCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CTCGATT------------------------------------------------GGAAGTG------------TTTGCAAGTGTGGGAGCAGTGTGTTTGTTGTGTGTGTGTGTGTGTTGTGCT-------------------------------------------TTGAATTGGGAATTCGAAATA---AAATTCAAATCGGATTTCGAATTCGTTGAAC-TCTG---------------------------GCTCGG----CATTCTTATAA------------TGT--ACA
droGri2 scaffold_15126:5986099-5986160 - CACAGTCGAGATGACACAACAACCACAATGGGGCATAAGTTTATCAAAGTGTAAGTGC--AA-C-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGTACCGAGATGACGCAACAGCCGCAATGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGATCGATCTATGGGATATCAC------AACCATCAACAC--CACTGCCACCACCATCATCATCA--------------------CATC------ATCA------TCATCATAATCATGAAATGGCCATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCTGAATGCGAATTG-TG-----------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TTC-GGGGGG----CATTTTCGAGT------------GGT--AGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TG-----------------CGG-ATCGTTGAACCTGC.....................................................................2012.00220000000000000000
......................................................................................................................................................................................................................................................................................................................ATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------..................................................................................................................................2112.00200000000002000000
.......................CGCAATGGGGCATAAGCCTCTCGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATGCGAATTG-TG-----------------CGG-AT.................................................................................2111.00100000000001000000
....................................................................................................................................................................................................................................................ATCA--------------------CATC------ATCA------TCATCAT....................................................................................................................................................................................................................................................................1930.33100000000001000000
..............................................................................................................................................................................................................................................................................TC------ATCA------TCATCATAATCA...............................................................................................................................................................................................................................................................18110.09100000000001000000
droSec2
TAGTACCGAGATGACGCAACAGCCGCAATGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGA----TCCATGGGATATCAC------AACCATCATCAC--CACTGCCACCACCATCATCATCA--------------------CATC------A---------TCATCATCATCATGAAATGGCCATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCTGAATGCGAATTG-TG-----------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TTC-GGGGGG----CATTTTCGAGT------------GGT--AGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................CAATGGGGCATAAGCCTCTCGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020020
................CAACAGCCGCAATGGGGCATAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.......................CGCAATGGGGCATAAGCCTCTCGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.............ACGCAACAGCCGCAATGGGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
dm3
TAGTACCGAGATGACGCAACAGCCACAATGGGGCATAAGCCTATCGAGGTGTAAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGA----TCCATGGGATATCACAAACACAACCATCA--AC--CACTATCACCACCAACATCATCA--------------------TATC------GTCA------TCATCATCATCATGAAATGGCCATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCTGAATGCGGATTG-TG-----------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TTC-GGGGGG----CATTTTCGAGT------------GGT--AGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................GGCATAAGCCTATCGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTGCG-----------ATCG--------TTC-GGGGGG----C..............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------..................................................................................................................................2112.0020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................ATGAAATGGCCATAAGGAAGTGC.........................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000
TAGTACCGAGATGACGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
...................................................TAAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGA----TC...........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................ATGGGATATCACAAACACAACCATC.................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGGGCATAAGCCTATCGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGCG-----------ATCG--------TTC-GGGGGG----CA.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AATGGCCATAAGGAAGTGC.........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GGGGCATAAGCCTATCGAGGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ACAGCCACAATGGGGCATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGAGATGACGCAACAGCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-TG-----------------CGG-ATCGTTGAACCTG......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................AATGGGGCATAAGCCTATCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ATGGGATATCACAAACACAAC.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............GCAACAGCCACAATGGGGCATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AACAGCCACAATGGGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTATTCTGAATGCGGATT............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................TCA--AC--CACTATCACCACCA............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCGA----TCCA.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCGAGGTGTAAGTGT--GC-C-ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AATGGCCATAAGGAAGTGCTGCGTGCGC----------------------------------------------------------------------------------------------C.................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................AAGTGT--GC-C-ACAT--------------------------------------------------------------------------------------------------------------CCTTCG..................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......CGAGATGACGCAACAGCCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CACAATGGGGCATAAGCCTATCGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATGGGGCATAAGCCTATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AGATGACGCAACAGCCACAATGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCACAATGGGGCATAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GTGCTGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTA...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-TG-----------------CGG-ATCGTTGAACCTGCG-----------ATCG--------.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................AGCCACAATGGGGCATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CATCA--------------------TATC------GTCA------TCATCATC...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................AACAGCCACAATGGGGCATAAGCCTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GATGACGCAACAGCCACAATGGGGCATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCAACAGCCACAATGGGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATTG-TG-----------------CGG-ATCGTTG............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................ACAATGGGGCATAAGCCTATCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGGGCATAAGCCTATCGAGGTGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCGGATTG-TG-----------------CGG-ATCGTT.............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......GAGATGACGCAACAGCCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................CAACCATCA--AC--CACTATCACCACCAACA.........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGTATTCTGAATGCGATC.............................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TATC------GTCA------TCATCATCAT.................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TCA------TCATCATCATCATGA............................................................................................................................................................................................................................................................18200.1020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TC------GTCA------TCATCATCATCA...............................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGTCCCGAGATGACGCAACAGCCGCAGTGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACATC-CC-------------------------------------------------------------------------------------------------------------------------AGTGCTATCACC-CCACCACCATCGTCACTCCATCATCATCGCCATCATCATCA----------------------CC------ATCA-CGA--TCACCATCATCATCAAATGGCCATAAGGAAGTGCCGCGTGCGC------------------------------CG--------------------------------CGTGCG--------------------------GAGTATTCAGAATGCGGATTG-TG-----------------TGG-ATCGTTGAACCTGCG-----------ATCG--------T---GAGGGG----CCTTTTCGAGT------------GGT--AGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................TGCCGCGTGCGC------------------------------CG--------------------------------CGTGCG--------------------------GAGT............................................................................................................................24116.001600000016
..................ACAGCCGCAGTGGGGCATAAGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........TGACGCAACAGCCGCAGTGGGGCATAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
.........GATGACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
................................GCATAAGCCTCTCGAGGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGAATGCGGATTG-TG-----------------T......................................................................................2011.0010001000
droYak3
CAGTCCCGAGATGACGCAACAGCCGCAGTGGGGCATAAGCCTCTCGAGGTGTAAGTGT--GC-C-ACATCCCA-ATCTCCCCCC-------------------------------------------------------------------------------------------------CTCGA---------GTGCTATCAC------CACCGTCA-----------CCATCACCATCTTCATCG--------------------CATC------GTCAT---CA-CATCATCATCATTGTTTGGCCATAAGGAAGTGCCGCGTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCAGAATGCGGATTG-TGTGGAT------------CGG-ATCGTTGAACCTGCG-----------ATCG--------TGA-GGGGGG----CATTTTCGAGT------------GGT--AGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............GCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00301100100000
..............CGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAGAATGCGGATTG-TGT.......................................................................................................2212.00200000020000
.........GATGACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000
..........ATGACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000
....CCCGAGATGACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
..................ACAGCCGCAGTGGGGCATAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................................GTGCGC----------------------------------------------------------------------------------------------CGGTGTATTCAGAATGCGG...............................................................................................................2511.00100000010000
............GACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
............GACGCAACAGCCGCAGTGGGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............GCAACAGCCGCAGTGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
................CAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
................CAACAGCCGCAGTGGGGCATAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCGGATTG-TGTGGAT------------.......................................................................................1811.00100100000000
..............CGCAACAGCCGCAGTGGGGCATAAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAT------------CGG-ATCGTTGAACCTGC.....................................................................2311.00100000010000
............GACGCAACAGCCGCAGTGGGGCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000100000
.................AACAGCCGCAGTGGGGCATAAGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..........ATGACGCAACAGCCGCAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................ATAAGGAAGTGCCGCGTGCGC----------------------------------------------------------------------------------------------CGGTGT............................................................................................................................2711.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGAATGCGGATTG-TGTGGAT------------C......................................................................................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................CATTGTTTGGCCATAAGGAAGT...........................................................................................................................................................................................................................................2211.00100000010000
............GACGCAACAGCCGCAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.......GAGATGACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..............CGCAACAGCCGCAGTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
........................GCAGTGGGGCATAAGCCTCTCGAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.............ACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
.......GAGATGACGCAACAGCCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............GCAACAGCCGCAGTGGGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG--------TGA-GGGGGG----CATTTTCGAGT------------G.......2511.00100000010000
......CGAGATGACGCAACAGCCGCAGTGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.....................................................................................................................................................................................................................................................................................................................CATAAGGAAGTGCCGCGTGCGC----------------------------------------------------------------------------------------------CGGT..............................................................................................................................2611.00100000010000
droEug1
CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAGCCTGTCAAAGTGTAAGTGTTAGCCA-ATGAT-C-----------------------------------------------G-----------------GGGGA------------GT--TGATCCTACCCAG----------------------------------------------------------------------------------------------------TG------------------------------------------------------------TTATCTCAT------------------CTGTATACTCGTATGTATCATCCTCCATATCAGGAAGTGCGGAT---------------------------------------ATTTG-TG-----------------CGG-ATCGTTGAAC-TGCG-----------ATCG--------C---GGGGGG----CATTCTTTAGT------------G-------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGTCCCGAGATGACTCAACAGCCGCAATGGGGCATCAGCCTGTCGAAGTGTAAGTGTAGT-CCGAGTGC-CCGCAAGGA---------------C-------------------------------------------------------------C---GC-C-----GCGCGCCCTCCCTCGG----C--------------------------------------------------------------------------------CGGGGTCT-------C---A--------------------------------------------CTCCCGCCA------------------------------------------------GGAAGTGCGGGG----------------------------CTCGGAGCGCGGACTG-CGCG---------------CGG-ATCGATGAAC-TGCGGT----------TC-------------G-GGGG----CATTCTCGATCCGACTT-CGCGTGGT--CGGSizeHit CountTotal NormTotal
No Reads
droTak1
CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAGCCTGTCGAGGTGTAAGTGTTAT-CAGAGAT-------------------------------------CCTATGAA-AATCGAAAAA-----------------------------GGAT--CGC-C-----ATACGATC----------------------------------------------------------------------------------------------------T-------CA-TATCATC--------------------------------------------ATCA------------------------------------------------GGAAGTGCGGAATTC---------------------AGAATTCAGAGTGCGGAATG-TGCGG--------------CGG-ATCGTTGAAC-TGCGAT----------TCG--------C---GGGGCG----CATTCTTGATATAATATCCGAGTGGTTAAAGSizeHit CountTotal NormTotal
No Reads
droEle1
CAGTCCCGAGATGACACAACAACCACAATGGGGCATAAGCCTATCGAGGTGTAAGTGTTGGCCA-ATGGC-CAAAAATAA---------------CAGC----------------------CAAA-----------------------------AAATGAATCCTCTCGGG----------------------------------------------------------------------------------------------------TG------------------------------------------------------------TTATCGTATAA------------------------------------------------GGAAGTGCGGA-----------------------------ATCGGAATCCAGAATG-TG-----------------CGG-ATCAATGAAC-TGCGAT----------CCG--------ATTGAAGGGG----CATTCTTGAGG------------C-------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAACCTATCGAGGTGTAAGTGTT-GCCA-ATAA--------AAA---------------A-------------------------CAAA-----------------------------AA--GAATCCTATCGGG----------------------------------------------------------------------------------------------------TG------------------------------------------------------------TTAACTTATAA------------------------------------------------GGAAGTGCGGA----------------------------ATCCAGAATGTGGAATG-TT-----------------CGG-ATCGTTGAAC-TGCGAT-----G-CGATCA------------AAGGGG----CATTCTTAAGG------------C-------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGTCCCGAGATGACTCAACAACCACAATGGGGCATAAACCTATCGCGGTGTAAGTGTT-GCCA--A-------AACTCC---------------CAACCAG----A---AAA-AAAAAGA-AAAAGTATTCGATTCG--------------------GGATCCTCTCGGC----------------------------------------------------------------------------------------------------TGTTATCT-------C---ATTCTC--------------------------------------------ATCA------------------------------------------------GGAAGTGCGGAGT----------------------------T-------CAGAATG-TG-----------------CGG-ATCGTTGAAC-TGCG-----------ATCG--------C---G-GGGG----CATTCTTGAGA------------AAC--ATTSizeHit CountTotal NormTotal
No Reads
droKik1
CAATCCCGAGATGACACAACAGCCACAATGGGGCATAAACCTATCCAGGTGTAAGTGC--CC-A-ATAA--------------------------------------------------------------------------------------------------------------TATGTTA----TCCATG------------------------------------ATTACCAT-------------------CTCGCCA--TAGCG------------------------------------------------------------TTATCTCATAA------------------------------------------------GGAAGCGCCCGG---------------------CAGTGCTTGCGGAATTCGGAATG-CCCT---------------GCG-ATCGTTGAAC-TGAACAGCGACGACGATCG--------C---GGGGCG----AATTCTTGGGG------------CAA--AATSizeHit CountTotal NormTotal
No Reads
droAna3
CAATCCCAAGATGACTCAACAACCGCAATGGGGCATAAGCTTCTCCAAGTGTAAGTGA--TC-A-AGA-----------------------------------CATC------------AAGAAA-----------------------------GAAT--------------------------------------------------------------------------------------------ATGTTAATCCTCGCCAGG---TG-------------------------------------------------------TGGTGCTCTCACACGA------------------------------------------------GGAAG----------------------------------------------------TG-----------------CAG-ATCGTTGAACTTGT----------TGATCG-------------AGGGG-------TTTAGACCAT----------ATT--TTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............GACTCAACAACCGCAATGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002110000
...........TGACTCAACAACCGCAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................CGCAATGGGGCATAAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
...................CAACCGCAATGGGGCATAAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.........GATGACTCAACAACCGCAATGGGGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
............................................................................................................................................................................................................................................................GTTAATCCTCGCCAGG---TG-------------------------------------------------------TGG................................................................................................................................................................................................................................2111.001100000
.........GATGACTCAACAACCGCAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
........................GCAATGGGGCATAAGCTTCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
CAATCCCAAGATGACTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
CAATCCCACGATGACTCAACAACCACAATGGGGCATAAGCTTCTCCAAGTGTAAGTGA--TC-A-ACGA--------------------------------G----A---AAA-T----A-----------------AGGGAGATAAACCCAAAGAGT--------------------------------------------------------------------------------------------ATCATAATCCTCGCCAGGTGGTG------------------------------------------------------------GTGTCCCACGA------------------------------------------------GGAAGTCCGTG-----------------------------------------CTCG-TG-----------------CCG-ATCGTTGAACTTGT----------CGATCGGGCGTCAGC---G-GGGGTCTCGATTCTTGAGACGTT--------TAT--ACCSizeHit CountTotal NormTotal
No Reads
dp5
TAATCCCGAGATGACACAACAGCCGCAATGGGGCATAAACCTATCACGGTGTAAGTGT--CC-C-ATGCC-CA-AGCCCCTGCCTTCGGGGGGATCCG----CCATCAAAAGTT-ATTTGGCAAA-----------------------------AACT--TTC-T-----GTGTTATC----------------------------------------------------------------------------------------------------T------------TCCAC--------------------------------------------ATCC------------------------------------------------GTAAACCCCGAGCCCAACTTTGGGAGTGTGCTTTATTGAATAATAAATACGAATCGATGGGGATGGGGTTGGGGCT-GGATACGTTGAAC-TCCG-----------ATC---------------GGAG----CATTCTTGAAA------------TTA--AATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................ATGGGGCATAAACCTATCACGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......CGAGATGACACAACAGCCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............GACACAACAGCCGCAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................CAATGGGGCATAAACCTATCACGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
.............................GGGGCATAAACCTATCACGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TAATCCCGAGATGACACAACAGCCGCAATGGGGCATAAACCTATCACGGTGTAAGTGT--CC-C-ATGCC-CA-AGCCCCTGCCTTCGGGGGGATCCG----CCATCAAAAGTT-ATTTGGCAAA-----------------------------AACT--TTC-T-----GTGTTATC----------------------------------------------------------------------------------------------------T------------TCCAC--------------------------------------------ATCC------------------------------------------------GTAAACCCCGAGCCCAACTTTGGGAGTGTGCTTTATTGAATAATAAATACGAATCGATGGGGATGGGGTTGGGGCT-GGATACGTTGAAC-TCCG-----------ATC---------------GGAG----CATTCTTGAAA------------TTA--AATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................GGGGCATAAACCTATCACGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002011000
........................GCAATGGGGCATAAACCTATCACGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
droWil2
ACCACCACCATCACCACCACCGCCACCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCACCATCATTAT----------------CATC------ATCA------TCATCATCATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CCGAGCCGAGATGACACAACAACCGCAATGGGGCATAAGCTTATCAAAGTGTAAGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................CAACAACCGCAATGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.004103000000000000000000000000000000000000000000000000000000000000
.................AACAACCGCAATGGGGCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
............GACACAACAACCGCAATGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.........GATGACACAACAACCGCAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......GAGATGACACAACAACCGCAATGGGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
...........TGACACAACAACCGCAATGGGGCATAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................CAATGGGGCATAAGCTTATCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
CACGGCTGAGATGACACAACAACCGCAATGGGGCATAAGTTTATCAAAGTGTAAGTGC--AA-T-A--A----------------------GAAT-----------CCAA-----------------------------------------------------------------------------------------------------------------------------------------------------CTCGATT------------------------------------------------GGAAGTG------------TTTGCAAGTGTGGGAGCAGTGTGTTTGTTGTGTGTGTGTGTGTGTTGTGCT-------------------------------------------TTGAATTGGGAATTCGAAATA---AAATTCAAATCGGATTTCGAATTCGTTGAAC-TCTG---------------------------GCTCGG----CATTCTTATAA------------TGT--ACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCT-------------------------------------------TTGAATTGGGAATTCGAA..............................................................................................................2611.001100000
.............ACACAACAACCGCAATGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................CAACAACCGCAATGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTTGTGCT-------------------------------------------T...............................................................................................................................1950.201000100
droGri2
CACAGTCGAGATGACACAACAACCACAATGGGGCATAAGTTTATCAAAGTGTAAGTGC--AA-C-A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...AGTCGAGATGACACAACAACCACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
...........................ATGGGGCATAAGTTTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
......................CCACAATGGGGCATAAGTTTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
..CAGTCGAGATGACACAACAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
........AGATGACACAACAACCACAATGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
.ACAGTCGAGATGACACAACAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
.........GATGACACAACAACCACAATGGGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110

Generated: 05/18/2015 at 01:46 PM