ID:

dsi_1230

 Coordinate:

2r:5839094-5839243 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-14.0 -13.9 -13.9

Flybase annnotation

Antisense to three_prime_UTR [2r_5838617_5839161_+]; Antisense to exon [2r_5838604_5839161_+]

No Repeatable elements found

Sense Strand Reads

TGCTTATAAGCAAGTTCTGAATAAAACCCCCCAAATGTATCATTCTTTGTCTTATCAACGCGGATAAGAGAACATCTTATCTTACAAAAAACCCACAACACCACTATTTTAGTCACGATACACTTTCAAGTTGAATGCATTCTTGTGTACACTTTTATTACAAATCGATCGGTTGTACATCAATGTCATTTTAACTATAGCTTGGGCAATCTATGTACTACGGACTTTGCTAGTTGGGGGTCAAGTAGGA
********************************************************.....((((((((.....)))))))).......((((.........((((...))))..((((........(((.((.(((((....))))).))))).........))))...))))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR902008
ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................TTTATTACAAATCGATCGGTT............................................................................ 21 0 1 21.00 21 14 7 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CATTTTAACTATAGCTTGGGC........................................... 21 0 1 8.00 8 7 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATTTTAACTATAGCTTGGGC........................................... 20 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0 0 0
.............................................TTTGTCTTATCAACGCGGATA........................................................................................................................................................................................ 21 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................TTCTTTGTCTTATCAACGC............................................................................................................................................................................................. 19 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCAATCTATGTACTACGGACT........................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGACTTTGCTAGTTGGGGG.......... 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
........................................................AACGCGGATAAGAGAACATCT............................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................ATTCTTTGTCTTATCAACGCG............................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAACTATAGCTTGGGCAATCT...................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCGCGGATAAGAGAACATC.............................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AACGCGGATAAGAGAACATCC............................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TCAACGCGGATAAGAGAACATCT............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTAACTATAGCTTGGGC........................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTCCTCTGTACACTTTTATTAAAA....................................................................................... 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................TCTTTGTCTTATCAACGCGGATAAGAGAA.................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................CAACGCGGATAAGAGAACATCT............................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......TAAGCAAGTTCTGAATAAAACCCCCCAAA....................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................TATTTTAGTCACGATACACTT............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGTACTACGGACTTTGCTAGT................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................TTCTTTGTCTTATCAACGCGG........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCGGTTGTACATCAATGTCA.............................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTTATTACAAATCGATCGGTT............................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTTTGTCTTATCAACGCGGAT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATCGGTTGTACATCAATGTC............................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTATTACAAATCGATCGGTT............................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATGTACTACGGACTTTGCTAGT................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTTTGTCTTATCAACGCGGAC......................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAACTATAGCTTGGGCAATCTAT.................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......TAAGCAAGTTCTGAATAAAAC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............TCTGAATAAAACCCCCCAAATTG.................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................AACTATAGCTTGGGCAATCT...................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................TATTACAAATCGATCGGTTGC.......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ATTGCAAATCGATCGGATGTAA........................................................................ 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................TATTACAAATCAAATGGTTGTA......................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................AATCGATCGGTCGTA......................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................TCTATAGGTTGTACGTCAA................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................CTTTGCAAGCAGGGGGTCA....... 19 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

------------------------------------------------------------------------------------------------------------------------------------######################################################################################################################
ACGAATATTCGTTCAAGACTTATTTTGGGGGGTTTACATAGTAAGAAACAGAATAGTTGCGCCTATTCTCTTGTAGAATAGAATGTTTTTTGGGTGTTGTGGTGATAAAATCAGTGCTATGTGAAAGTTCAACTTACGTAAGAACACATGTGAAAATAATGTTTAGCTAGCCAACATGTAGTTACAGTAAAATTGATATCGAACCCGTTAGATACATGATGCCTGAAACGATCAACCCCCAGTTCATCCT
****************************************************************************.....((((((((.....)))))))).......((((.........((((...))))..((((........(((.((.(((((....))))).))))).........))))...))))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body		 O002
Head
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...........................................................................................................................AAGGTTCAACTTTCGTAAGGA.......................................................................................................... 21 3 6 45.83 275 274 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TGCTATGTGAAAGTTCAACTT................................................................................................................... 21 0 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCAGTGCTATCTGAAAGTTCAA...................................................................................................................... 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACGAACCCGTTAGATACATGATGCCT.......................... 26 1 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..............................................................................................................................GTTCAACTTACGTAAGAACAC....................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CCGTTAGATACATGATGCCTG......................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................TTACATAGTAAGAAACAGAAT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATACATGATGCCTGAAACGAT.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATACATGATGCCTGAAACG.................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................TTATTTTGGGGGGTTCACATC.................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTACAGTAAAATTGATATCGAACCCGT.......................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................GTGTTGTGGTGATAAAATCAG........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TGTTTAGCTAGCCAACATGTA...................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGGTGATAAAATCAGTGCTAT.................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................ATGTTTAGCTAGCCAACATGT....................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AATGTTTAGCTAGCCAACATGTAGT.................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................AGTTACAGTAAAATTGATATCGAAC.............................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................TCAGTGCTATGTGAAAGTTCAAC..................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGATATCGAACCCGTTAGGTA.................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................TGGGGAGTTTACATAGGAAGAAT.......................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................AACCCGTTAGATACATGATGC............................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................AGCTAGCCTACATGTAGTTACAGTAAAAT......................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................ATAACGTTTAGCTAGCCAACATGTAGTT................................................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....ATATTCGTTCAAGACTTATTT................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................GTAGTTACAGTAAAATTGATATCGAAC.............................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................AAGTTCAACTTACGTAAGAA.......................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................AATGTTTAGCTAGCCAAC........................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................ATGTTTTTTGGGTGTTGTGAT................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAATTGATATCGAACCCGTTAGAT..................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGATAAAATCAGTGCTATGTG............................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGAACCCGTTAGATACATGATGCCT.......................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GCTAGCCAACATGTAGTTA.................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACATGATGCCTGAAACGAT.................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................AACCCGTTAGATACATGATG............................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
ACGAATATTCGTTCAAGACT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AGCCTACATGTAGTTACAGTAAAATTGATA.................................................... 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAATTGATATCGAACCCGTTA........................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGTTTAGCTAGCCAACATG........................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ATGTGAAAATAACGTTTAGCTAGCCA............................................................................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGATACATGATGCCTGAAACGATCAAC.............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ACATTTGAAAATAATGTTT...................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................TCAGTGCTATGTGAAAGTTCAA...................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GGTGTTGTGGTGATAAAGTCA......................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................TATCGAACCCGTTAGATACATG................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................TTAGCTAGCCTACATGTAGTTACAGTA............................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AGTAAGAAACAGAATAGTTGC.............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TGATATCGAACCCGTTAGATACATGATGC............................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ATATTTGCGCCTATTCTCTTG................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GGTGATGTGGTGATAACA............................................................................................................................................ 18 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................TTTTTGGGTGTTGTGGAAA................................................................................................................................................. 19 2 4 0.50 2 0 0 0 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................................................................GCTAGATCACATGTAGTTACAGT.............................................................. 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................CAACATGTAGATTCAGTA............................................................. 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................CAGTGTTGTGGTGATAAAA............................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................AAAAAGAATAGTTGCGCAT.......................................................................................................................................................................................... 19 2 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTTTGGGTGTTGTGGAAA................................................................................................................................................. 18 2 14 0.14 2 0 0 0 0 0 0 0 0 0 2 0 0 0
..........GTTCAAGACTTAGTTT................................................................................................................................................................................................................................ 16 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................CTATGTGCAAGGTCAAGTTA.................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................CAACATGTAGATTCAGTAT............................................................ 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
............................................................................................................................AGGTTCAACTTTCGTAAG............................................................................................................ 18 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATAGAATCTTTTTTG.............................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................TGGGAGACTAATGTTTAG.................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 01:04 AM