ID:

dsi_12298

 Coordinate:

2l:3354233-3354382 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.6 -20.6 -20.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTGAACAGTGTCTCACATAAATTTATGGCAAGCAATTATTCAATTTCAGCCATTTGTGGCTGGCAAACATATTCACAGTTTGTATGCGATTTCAATGGCTCTTTTTTGGCCACCAAATTGTTCTTGTCCTTTTTTTCTGTGGGCGAGTATTCTTTTGTGTGTGTGCTCATGTTTCGTCTTTTGGCTCATGATCATTGCAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
*************************************************************************...((((.....((((.....(((((.........(((((((((.....(((((((...........)))))))......)))).))).)))).)))...)))).....))))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................................................................................TCTTTGGCCTCGGACCTGACCAGAA............ 25 0 1 3.00 3 2 0 0 1 0 0 0
.................................................................................................................................................................................................................TGTCTCTTTGGCCTCGGACCTGACCAGAA............ 29 0 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................................................................................TCATGTTTCGTCTTTTGGCT................................................................ 20 0 1 2.00 2 0 0 2 0 0 0 0
......................................................................................................................................................................TCATGTTTCGTCTTTTGGCTC............................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................TGGCTCATGATCATTGCAGCAGCGACAA......................................... 28 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................TGGGCGAGTATTCTTTTGTGTGTGTGC.................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................CACAGTTTGTATGCGATTTCAATGGC....................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTGGCCTCGGACCTGACCAGAATG.......... 25 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TCTTTGGCCTCGGACCTGACCAGA............. 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................AGCGACAATGTCTCTTTGGCCTCG......................... 24 0 1 1.00 1 0 0 0 0 1 0 0
............................................................................................................................................................................TTCGTCTTTTGGCTCATGATCATTGC.................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGCAGCGACAATGTCTCTTTGGC............................. 27 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................TGTGTGTGTGCTCATGTTTCGTCTT...................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................TCTTTGGCCTCGGATCTGACCAGAA............ 25 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................TGTGTGCTCATGTTTCGTCTTTTGGC................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCTCCTCGGACCTGACC................ 18 2 8 0.13 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................TTCTTTGGCCTCGGA....................... 15 1 11 0.09 1 0 0 0 0 0 1 0
............................................TTCAGCCCTTTGTCGCT............................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

GACTTGTCACAGAGTGTATTTAAATACCGTTCGTTAATAAGTTAAAGTCGGTAAACACCGACCGTTTGTATAAGTGTCAAACATACGCTAAAGTTACCGAGAAAAAACCGGTGGTTTAACAAGAACAGGAAAAAAAGACACCCGCTCATAAGAAAACACACACACGAGTACAAAGCAGAAAACCGAGTACTAGTAACGTCGTCGCTGTTACAGAGAAACCGGAGCCTGGACTGGTCTTACATACACTCGC
****************************************************************...((((.....((((.....(((((.........(((((((((.....(((((((...........)))))))......)))).))).)))).)))...)))).....))))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
........................................................................AGTGTCAAACATAAGC.................................................................................................................................................................. 16 1 3 0.33 1 1 0 0 0 0 0
....................................................................................AGGCTAAAGTTACCGA...................................................................................................................................................... 16 1 11 0.27 3 0 1 2 0 0 0
...................................................................................................AGAAAAAATCGGTGGTTTC.................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 1 0
...................................................................................................................................................................TCGAGTACAAAGCAGAACGC................................................................... 20 3 7 0.14 1 0 0 0 1 0 0
........................................................................AGTGCCAAACATAAGCT................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................CCGGAGCCTGGACTCGTTG............. 19 3 20 0.05 1 0 0 0 0 0 1
..................................................................................................................................................................................AAAAACGTGTACTAGTAA...................................................... 18 2 20 0.05 1 0 1 0 0 0 0
....................................................................................AGGCCAAAGTTACCGAG..................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:3354183-3354432 - dsi_12298 CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGTGG--CTG-------GC-----------------------------------------------------------------AAACA--T------------ATT---CACAG------------TTTGTAT--------------GCGATTT--------CAATGG--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGTCCTTT-------TTT----------------T-----------C------------------------------------------TG----------TGGGCGAGTATTCTTTT--GTG--TGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
droSec2 scaffold_5:1596854-1597104 - CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------GAACA--T------------TTT---CACAG------------TTTGTAT--------------GCGATTT--------CAATGG--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGTCCTTT-------TTT---------------TT-----------C------------------------------------------TG----------TGGGCGAGTATTCTTTT--GTG--TGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
dm3 chr2L:3494572-3494804 - CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AAACG--T------------TTT---C-CAG------------TTCGTATGC------------GCGATTT--------CAATGG--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGGCCTTT-------TTT-------------------------------------------------------------------------------------------------TTT--GTG--TGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
droEre2 scaffold_4929:3529485-3529732 - CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AATGA--T------------TTT---CCCAG------------TTTGTAT--------------GCGATTT--------GTATGG--CTCTT---------------------------------------TTTGGCCC----------------------------------------------GCCA-------------------------------------------------TTT---TT-------------------------------------TTTTTTTGGTTTTTT-----------------------------------------GG----------TGGGCGAGTTATCATTT--GAG--AGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
droYak3 2L:3482834-3483121 - CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AAACA--T------------TTT---CCCAG------------TTTGTAT--------------GCGATTT--------CAATGC--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGGCCATT-------TTTTTGATTTTTTGATTTGT-T-----TTTTTTGT--TT------------------------------------GTGGTTGTTGTTAGGCGAGTAATCTTTT--GTG--TGTGCT-G-TGCTCATGTTTC-----GT------CTTTTGGCTCAC--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
droEug1 scf7180000409554:2593897-2594155 + CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CAGCCATTTGCGG--CTA-------CC-----------------------------------------------------------------AAGCA--T------------TTT-ATCCCAT-------------------------------------TTT--------CGATGC--CTTTT---------------------------------------TTTGGCC-----------------------------------------------ACAA--ACTCAATGG-------------------------------------AAAT---TGTTCTTGGCCTTT-------TTT---------------TT------------------------------------------------------------------TTGGCGGCTAATCTTAT--GTG--TGTGTTTGTTGCTCATGTTTC-----GATTTTCGCTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGACCTCGGACCTGACCAGAATGTATGTGAGCG
droBia1 scf7180000302261:1043481-1043745 - CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CGGCCATTTGCGG--CTG-------CC-----------------------------------------------------------------AAACA--T------------TTG-CTCCCAG----------ACTTCTTAT--------------TCGATTC--------CAATGG--CTGTT---------------------------------------TTTGGCC-----------------------------------------------ACGA--ACCCAATGG-------------------------------------AAATCGTCGTTCTTGGCCTTT-------TTT-----------------------------------------------------------------------------------TGGGCGGGTATTTTCATAAGTG--TGTCT----TGCTCATGTTTC-----GA------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGATAATGTCTCTCTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
droTak1 scf7180000415438:411688-411950 + CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CAGCCATTTGCGG--CTG-------CC-----------------------------------------------------------------GAACA--T------------TTTGATCCCG-----------TTTTTTTGT--------------GCGATTT--------CAATGG--CTTTT---------------------------------------TTTGGCC-----------------------------------------------ACCAAAAATCAATGG-------------------------------------AAAT---CGTTCTTGGCCTTT-------T-T-----------------------------------------------------------------------------------TGGGCGGGTAATTTCTTAAGTG--TGTTT----TGCTCATGTCTC-----GA------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGATAATGTCTCTTTGGCCTCGGACCTAACCAGAATGTATGTGAGCG
droEle1 scf7180000490728:166598-166817 - CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CCTAC-------------------------------------------------------------------------------------------------------------------CT-----------TTTTTTAAC--------------TCAATTT--------CATTGG--CTGTT---------------------------------------TTTGGCC-----------------------------------------------GGGA-------------------------------------------------AA--------CTTGGCCTTT-------TTT-----------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTG--TGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCATTGGCCTCGGATCTGACCAGAATGTATGTGAGTG
droRho1 scf7180000779523:173879-174139 - CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCTGTTT--CGGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AAACA--T------------TTT-ATCCCAA-----------TTTTTTAC--------------TCGGTTC--------CAATGG--CTGCT---------------------------------------TTTGGCC-----------------------------------------------ACGA--ACTCAATCGA------------------------------------AAAT---CATTCTTGGCCTTT-------T-T-----------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTG--TGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCATTGGCCTCGGACCTGACCAGAATGTATGTGAGCG
droFic1 scf7180000453924:1479919-1480163 - CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CAGCCATTTGCGG--CTC-------CG-----------------------------------------------------------------ATTCA-------------------------GTTTTTGTTCAATTTTTTTT--------------TCG-----ACGACTTCAGTG---------------------------------------------------GCC-----------------------------------------------A----------GTGG-------------------------------------AAAT---TGTTCTTGGCCTTT-------ATT-----------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTG--TGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCGT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTGTCCATAGCCTCCGACCTGACCAGAATGTATGTGAGCG
droKik1 scf7180000302270:1148684-1148908 + CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTTTCCAGACATTTGCAA--CTG-------AAAATGG-------------------------------------------------------------------T------------TAG---GACTT------------TTTATAT--------------A-GATTT--------CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTTT-------TTT-----------------------------------------------------------------------------------TTGGTGGGTAATTTAAT--GTG--TGTGT----TGCTCATGTTTC-----CA------CTTTTGGCTCATTGGC-------------------------------------T------CC-ATTGCAGCAGCAACGACAATGTCTCGGTGGCCTCCGACCTGACCCGCATGTATGTAAGCG
droAna3 scaffold_12916:5541925-5542141 - CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTTCGG--CTT-------TAAATGGAAGGCGGCTCC-------------------------------------------------AAGCA--T------------TTG-TTACCAA----------AATTTTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTATT-------TTTGGCAAATGAATGCGATT-----------------------------------------------------------------------------------------------------------------TTAATGCAAATTTTCTTGTT---TTATT-TTTG---CAGCAGCGATAATGTCTCAGTGGCCTCGGATCTGACCAGAATGTATGTAAGCG
droBip1 scf7180000396568:1296370-1296585 + CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCGTTTTCGG--CTT-------TAAATGGAAGGCGGCTCC-------------------------------------------------AAGCA--T------------TTT-TCACCAA----------ATTTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTATT-------TTTGGCAAACGAATGCGATT-----------------------------------------------------------------------------------------------------------------TTAATGCAAATTTTG-TGTT---TTATT-TTTG---CAGCAGCGATAATGTCTCTGTGGCCTCGGATCTAACCAGAATGTATGTGAGCG
dp5 4_group3:5253372-5253674 + CT-GCACAGTGTCTCACATAAATTT-ATGGCAA------------CCAATTATTCAATTT--CAGCCATTTTCAA--CCG-------AAAATGGGAGGCAACTCC-------------------------------------------------AAAAAGATTTATCTAAGCACTTTTATTTCT-----------TGGTTT--CTTAAGATTTCTTTTT------CAAGATATCGTTGGAACTCTT--TTTGGATGC-------------------------------------------------------------------------------------A-------------------------------------------------AAT---TATGCTTAGATTTTGGGCTGGGTTTT---------ATTTTT-------TTCTTCGT--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------TGTTTCTCATG-------A---TGT---------TCTCAT--G--------------------------------------------ATT-ATTG------CAGCGACAATGTTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCG
droPer2 scaffold_1:6744065-6744369 + dpe_575 CT-GCACAGTGTCTCACATAAATTT-ATGGCAA------------CCAATTATTCAATTT--CAGCCATTTGTAA--CCG-------AAAATGGGAGGCAACTCC-------------------------------------------------AAAAAGATTTATCTAAGCACTTTTATTTCT-----------TGGTTT--CTTAAGATTTCTTTTT------CAAGATATCGTTGG--AACTTTTTTTGGATGC-------------------------------------------------------------------------------------A-------------------------------------------------AAT---TATGCTTAGATTTTGGGCTGGGTTTT---------ATTTTT-TT----TTGTTCGT--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------TGTTTCTCATG-------A---TGT---------TCTCAT--G--------------------------------------------ATT-ATTG------CAGCGACAATGGTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCG
droWil2 scf2_1100000004521:8966315-8966583 - TT-CAACAGTGTCTCACATAAATTTTCTGTCAAGACAAGCTAAGGGCAATTATTCAATTT--AAACAAAAA--------------------TCC------------------------------------------------------------AAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAAAATTTTTTGGGGTTTGTTTTGCGTTTTACGATTGGAATT---TGTTGTTGTTTTGG-------TTT-------TTT----TTA-------TTTTTCAT------------------------------------------------------------------------A--TGTT-----TGCTA------------------------------TGGGGCTACATTCAACATTTAACGTAAATCCAAAT------CTTTGATTCTTAATCG--CCAGCAACGACAATGTTTCGGTGGCTTCCGATTTGACGCGAATGTATGTCAGCG
droVir3 scaffold_12963:15288869-15289207 + dvi_12023 TT-ATACAGTGTCTCACATAAATTT-ATGGCGG------------GCAATTATTCAATTT--AAGGCGAATTCGAATCCA----ACCAAAATTGGAGGCGGTTGCATGTCCAACTCTAATATTA-TTTATT------TCCATTAGGCTACCTT--TAAAGG----------CGC-----------------------------------------------------------------GA--CT-ATTTGAAATGCAA-------------------------------------------------------------------------------------------------------------------------------------AAT---ACTTATCG-------GGCGGTATTTTGCTTGTTT----TTC-------TTTTTCAT--T-------TTGAACAAAT-----CGATTTTCATTCAATT----------TCGTCGGGT-TTCTACC--AAG--TTAA-----TGCTTATGTTTGCCGATGA------CTTTAACATC------------------------------------------TTCAATTTTA-ATCG---CAGCAGCGACAATGTGTCAGTGGCCTCGGACTTGACCCGCATGTATGTCAGCG
droMoj3 scaffold_6500:18266759-18267134 + TTTCGACAGTGTCTCACATAAATTT-ATGGCGG------------GCAATTATTCAATTT--AAGGCGAAATCGATTTCA----GCCAAATTTGGAGGCGGTTGCTTGTCCAACTCTAATATTAATTTATTTATCTATCCATCGGGCGGTCTCAAAAAAGG----------CGC-----------------------------------------------------------------GT--CT-ATTTGGAATGCAAATC-------GGGTGCA---TTTGTATTTGGACACTGAAATTCTGTTAACTGATTTTATTTCAGATTATTTATTTATT--TAC-----------------------------------------------------------------------------ATTTTGTTTGTTT----TGC-------TTTTTTGT--T------------------------------------------------TGGGCTTGTTATTTAC----CC--AGTT-----TGCTAATGCTTGCCGATGT------CTTTTACATC------------------------------------------TTCAATTCTC-ATCG---CAGCAGTGACAATGTCTCAGTGGCTTCCGACTTGACCCGCATGTATGTCAGCG
droGri2 scaffold_15126:4124492-4124817 - TT-TTACAGTGTCTCACATAAATTT-ATGGCGG------------ACAATTATTCAATTT--AAGGCGAATTCGA--TTTTCAATCCAAAATTGGAGGCGGTTGCATGTCGAACTCTAATATTA-TTTAAT------TGTGTGGTGCTGCCGT--TAAAGG----------CGC-----------------------------------------------------------------GG--CT-ATTTGGGATGGAAATTACTAACAGGGTTCTTCATT----TATGCTT---------------------------------------------AGTATA-------------------------------------------------AA-------TGTTGTTTTTT-------TTT------------------------------------------------------------------------G----------TTGT--TACAAGTTAAT--ACCGATGTT-----TGCTAATGTTTGCCGATGT------CTTTAACATC------------------------------------------TTCAATTCTT-ATCG---CAGCAGCGACAATGTTTCAGTGGCTTCGGACTTGACCCGCATGTATGTCAGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGTGG--CTG-------GC-----------------------------------------------------------------AAACA--T------------ATT---CACAG------------TTTGTAT--------------GCGATTT--------CAATGG--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGTCCTTT-------TTT----------------T-----------C------------------------------------------TG----------TGGGCGAGTATTCTTTT--GTG--TGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCCTCGGACCTGACCAGAA............2513.00300000020000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCTTTGGCCTCGGACCTGACCAGAA............2913.00300000030000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTTTC-----GT------CTTTTGGCT..................................................................................................................2012.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTTTC-----GT------CTTTTGGCTC.................................................................................................................2111.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAA.........................................2811.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGAGTATTCTTTT--GTG--TGTG-----TGC.................................................................................................................................................2711.00100000000001000000
....................................................................................................................................................................................CACAG------------TTTGTAT--------------GCGATTT--------CAATGG--C............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCTCGGACCTGACCAGAATG..........2511.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGCCTCGGACCTGACCAGA.............2411.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACAATGTCTCTTTGGCCTCG.........................2411.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---C....................................................2611.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---CAGCAGCGACAATGTCTCTTTGGC.............................2711.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTG--TGTG-----TGCTCATGTTTC-----GT------CTT........................................................................................................................2511.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG-----TGCTCATGTTTC-----GT------CTTTTGGC...................................................................................................................2611.00100000010000000000
droSec2
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------GAACA--T------------TTT---CACAG------------TTTGTAT--------------GCGATTT--------CAATGG--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGTCCTTT-------TTT---------------TT-----------C------------------------------------------TG----------TGGGCGAGTATTCTTTT--GTG--TGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCTGACCAG..............2611.0011000
...............................................................................................................................................................................TT---CACAG------------TTTGTAT--------------GCGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAG..................................................2811.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCTCGGACCTGACC................1911.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-AT..........................................................2611.0011000
dm3
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AAACG--T------------TTT---C-CAG------------TTCGTATGC------------GCGATTT--------CAATGG--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGGCCTTT-------TTT-------------------------------------------------------------------------------------------------TTT--GTG--TGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATG.......................................26112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTG---CAGCAGCGACAATGTC.....................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGC..............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGC.................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGC.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATT.........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AAACG--T------------TTT---C-CAG------------TTCGTATGC------------GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................C-CAG------------TTCGTATGC------------GCGATTT--------CAATGG--C............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---CAGCAGCGACAATGTCTCTTTGGC.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG-----TGCTCATGTTTC-----GT------CTTTTGGC...................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-A...........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ATTG---CAGCAGCGACAATGTCTCT..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTG--TGTG-----TGCTCATGTTTC-----GT------CT.........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAA.........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCTCGGACCTGAC.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ACCA-------------------------------------------------AAT---TGTTCTTGGCCTTT-------TTT-------------------------------------------------------------------------------------------------TTT--..................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTCTCTTTGGCCTCGGACCTGA..................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--G--------------------------------------------ATC-ATTG---CAGCAGC..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CA...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAATGTATGTGAGCG1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................ATTT--------CAATGG--CTCTTT--------------------------------------TTTGG............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTCTCTTTGGCCTCGGACC.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCATGTTTC-----GT------CTAGG......................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AATGA--T------------TTT---CCCAG------------TTTGTAT--------------GCGATTT--------GTATGG--CTCTT---------------------------------------TTTGGCCC----------------------------------------------GCCA-------------------------------------------------TTT---TT-------------------------------------TTTTTTTGGTTTTTT-----------------------------------------GG----------TGGGCGAGTTATCATTT--GAG--AGTG-----TGCTCATGTTTC-----GT------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTCTTTGGCCTCGGACCTGACC................2611.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGACCTGACCAGAATGTATGTGAGC.2811.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACCTGACCAGAATGTATGT.....2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGACCTGACCAGAATGTATGTGAG..2711.0010000010
droYak3
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AAACA--T------------TTT---CCCAG------------TTTGTAT--------------GCGATTT--------CAATGC--CTCTTT--------------------------------------TTTGGCC-----------------------------------------------ACCA-------------------------------------------------AAT---TGTTCTTGGCCATT-------TTTTTGATTTTTTGATTTGT-T-----TTTTTTGT--TT------------------------------------GTGGTTGTTGTTAGGCGAGTAATCTTTT--GTG--TGTGCT-G-TGCTCATGTTTC-----GT------CTTTTGGCTCAC--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGGCCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTCTTTGGCCTCGGAC......................2013.00321000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTCTCTTTGGCCTCGGAC......................2211.00110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGACAATGTCTCTTTGGCCTCG.........................2511.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGT--TT------------------------------------GTGGTTGTTGTTAGGC................................................................................................................................................................................2611.00100000010000
...................................................ATTCAATTT--CAGCCATTTGCGG--CTG-------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCT....................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCTGACCA...............2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTGGCCTCGGACCT....................1911.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGCCTCGGACCTGACCAGA.............2311.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-T-----TTTTTTGT--TT------------------------------------GTGGTTGTTGTT....................................................................................................................................................................................2611.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCTCGGACCTGACC................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------------------GTGGTTGTTGTTAGGCG...............................................................................................................................................................................1911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTTC-----GT------CTTTTGGCTC.................................................................................................................2011.00110000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGCTCAC--G--------------------------------------------ATC-ATTG---CAGC.................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTTTGGCCTCGGACCTGACCAGAAT...........2911.00110000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTCTCTTTGGCCTCGGAC......................2411.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTCTCTTTGGCCTCGGACCT....................2411.00101000000000
...............................................................................................................................................................................TT---CCCAG------------TTTGTAT--------------GCGATTT--------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000
droEug1
CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CAGCCATTTGCGG--CTA-------CC-----------------------------------------------------------------AAGCA--T------------TTT-ATCCCAT-------------------------------------TTT--------CGATGC--CTTTT---------------------------------------TTTGGCC-----------------------------------------------ACAA--ACTCAATGG-------------------------------------AAAT---TGTTCTTGGCCTTT-------TTT---------------TT------------------------------------------------------------------TTGGCGGCTAATCTTAT--GTG--TGTGTTTGTTGCTCATGTTTC-----GATTTTCGCTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCTTTGACCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotal
No Reads
droBia1
CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CGGCCATTTGCGG--CTG-------CC-----------------------------------------------------------------AAACA--T------------TTG-CTCCCAG----------ACTTCTTAT--------------TCGATTC--------CAATGG--CTGTT---------------------------------------TTTGGCC-----------------------------------------------ACGA--ACCCAATGG-------------------------------------AAATCGTCGTTCTTGGCCTTT-------TTT-----------------------------------------------------------------------------------TGGGCGGGTATTTTCATAAGTG--TGTCT----TGCTCATGTTTC-----GA------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGATAATGTCTCTCTGGCCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotal
No Reads
droTak1
CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CAGCCATTTGCGG--CTG-------CC-----------------------------------------------------------------GAACA--T------------TTTGATCCCG-----------TTTTTTTGT--------------GCGATTT--------CAATGG--CTTTT---------------------------------------TTTGGCC-----------------------------------------------ACCAAAAATCAATGG-------------------------------------AAAT---CGTTCTTGGCCTTT-------T-T-----------------------------------------------------------------------------------TGGGCGGGTAATTTCTTAAGTG--TGTTT----TGCTCATGTCTC-----GA------CTTTTGGCTCAT--G--------------------------------------------ATC-ATTG---CAGCAGCGATAATGTCTCTTTGGCCTCGGACCTAACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CCTAC-------------------------------------------------------------------------------------------------------------------CT-----------TTTTTTAAC--------------TCAATTT--------CATTGG--CTGTT---------------------------------------TTTGGCC-----------------------------------------------GGGA-------------------------------------------------AA--------CTTGGCCTTT-------TTT-----------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTG--TGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCATTGGCCTCGGATCTGACCAGAATGTATGTGAGTGSizeHit CountTotal NormTotal
No Reads
droRho1
CC-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCTGTTT--CGGCCATTTGCGG--CTG-------GC-----------------------------------------------------------------AAACA--T------------TTT-ATCCCAA-----------TTTTTTAC--------------TCGGTTC--------CAATGG--CTGCT---------------------------------------TTTGGCC-----------------------------------------------ACGA--ACTCAATCGA------------------------------------AAAT---CATTCTTGGCCTTT-------T-T-----------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTG--TGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCATTGG--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTCTCATTGGCCTCGGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotal
No Reads
droFic1
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAGTTT--CAGCCATTTGCGG--CTC-------CG-----------------------------------------------------------------ATTCA-------------------------GTTTTTGTTCAATTTTTTTT--------------TCG-----ACGACTTCAGTG---------------------------------------------------GCC-----------------------------------------------A----------GTGG-------------------------------------AAAT---TGTTCTTGGCCTTT-------ATT-----------------------------------------------------------------------------------TGGGCGGGTAATTTGAT--GTG--TGTGT----TGCTCATGTTTC-----GA------CTTTTGGCTCGT--G--------------------------------------------ATC-ATTG---CAGCAGCGACAATGTGTCCATAGCCTCCGACCTGACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotal
No Reads
droKik1
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTTTCCAGACATTTGCAA--CTG-------AAAATGG-------------------------------------------------------------------T------------TAG---GACTT------------TTTATAT--------------A-GATTT--------CTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTTT-------TTT-----------------------------------------------------------------------------------TTGGTGGGTAATTTAAT--GTG--TGTGT----TGCTCATGTTTC-----CA------CTTTTGGCTCATTGGC-------------------------------------T------CC-ATTGCAGCAGCAACGACAATGTCTCGGTGGCCTCCGACCTGACCCGCATGTATGTAAGCGSizeHit CountTotal NormTotal
No Reads
droAna3
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCATTTTCGG--CTT-------TAAATGGAAGGCGGCTCC-------------------------------------------------AAGCA--T------------TTG-TTACCAA----------AATTTTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTATT-------TTTGGCAAATGAATGCGATT-----------------------------------------------------------------------------------------------------------------TTAATGCAAATTTTCTTGTT---TTATT-TTTG---CAGCAGCGATAATGTCTCAGTGGCCTCGGATCTGACCAGAATGTATGTAAGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCCTCGGATCTGACC................1911.001000001
droBip1
CT-GAACAGTGTCTCACATAAATTT-ATGGCAA------------GCAATTATTCAATTT--CAGCCGTTTTCGG--CTT-------TAAATGGAAGGCGGCTCC-------------------------------------------------AAGCA--T------------TTT-TCACCAA----------ATTTTTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCTATT-------TTTGGCAAACGAATGCGATT-----------------------------------------------------------------------------------------------------------------TTAATGCAAATTTTG-TGTT---TTATT-TTTG---CAGCAGCGATAATGTCTCTGTGGCCTCGGATCTAACCAGAATGTATGTGAGCGSizeHit CountTotal NormTotal
No Reads
dp5
CT-GCACAGTGTCTCACATAAATTT-ATGGCAA------------CCAATTATTCAATTT--CAGCCATTTTCAA--CCG-------AAAATGGGAGGCAACTCC-------------------------------------------------AAAAAGATTTATCTAAGCACTTTTATTTCT-----------TGGTTT--CTTAAGATTTCTTTTT------CAAGATATCGTTGGAACTCTT--TTTGGATGC-------------------------------------------------------------------------------------A-------------------------------------------------AAT---TATGCTTAGATTTTGGGCTGGGTTTT---------ATTTTT-------TTCTTCGT--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------TGTTTCTCATG-------A---TGT---------TCTCAT--G--------------------------------------------ATT-ATTG------CAGCGACAATGTTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................CTTTTT------CAAGATATCGTTGGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030300000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTGGCTTCCGATCTGACG................2212.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCCGATCTGACGC...............1812.0020200000000
...................................................................................................................................................................................................................TTCTTTTT------CAAGATATCGTTGGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCGGTGGCTTCCGATCTGAC.................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGAATGTATGTGAGC.1911.0010100000000
..........................................................................................................................................................................................................................................................TGGATGC-------------------------------------------------------------------------------------A-------------------------------------------------AAT---TATGCTTAGATTTTGGG...............................................................................................................................................................................................................................................................................2811.0010100000000
....................................................................................................................................................................................................GGTTT--CTTAAGATTTCTTTTT------CAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................ATATCGTTGGAACTCTT--TTTGGATGC-------------------------------------------------------------------------------------A-------------------------------------------------A.....................................................................................................................................................................................................................................................................................................2811.0011000000000
..............................................................................................................................................................................................................................................................TGC-------------------------------------------------------------------------------------A-------------------------------------------------AAT---TATGCTTAGATTTTGGGC..............................................................................................................................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................ATATCGTTGGAACTCTT--TTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTG------CAGCGACAATGTTTCGGTGGCT............................2611.0010100000000
.....................................................................................................................................................................................................................CTTTTT------CAAGATATCGTTGGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAGAT-------------------------------------------------------------TGTTTCTCATG-------A---TGT---------T....................................................................................................................2511.0010000001000
.........................................................................................................................................................................................................................TT------CAAGATATCGTTGGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................................................ATATCGTTGGAACTCTT--TTTGGATGC-------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.........................................................................................AATGGGAGGCAACTCC-------------------------------------------------AAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AT---TATGCTTAGATTTTGGGCTG............................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTTGTGAAGAT-------------------------------------------------------------TGTTTCT................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................................TTCTTTTT------CAAGATATCGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------T......................................................................................................................................................2011.0010000001000
.................ATAAATTT-ATGGCAA------------CCAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................ATATCGTTGGAACTCTT--TTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------------------------------------------------TGTTTCTCATG-------A---TGT---------TCTCAT--G--------------------------------------------................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGACGCGAATGTATGTGAGC.2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------TGTTTCT................................................................................................................................................2811.0010000001000
.......................................................................................................................................................................................................................TTTT------CAAGATATCGTTGGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTGTGAAGAT-------------------------------------------------------------TGTTTCTCAT.............................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTTTCGGTGGCTTCCGATC.....................2511.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGT--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------TGTT...................................................................................................................................................2711.0010100000000
..................................................................................................................................................................................................................................AAGATATCGTTGGAACTCTT--......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCCGATCTGACGCGAATGTATGT.....2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCGT--TTGGGGTCTTGA..........................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................ATTTCT-----------TGGTTT--CTTAAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................GGAACTCTT--TTTGGATGC-------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGATCTGACGCGAATG..........1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCTGACGCGAATGT.........1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGATTTTGGGCTGGGTT........................................................................................................................................................................................................................................................................2011.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCGGTGGCTTCCGATCTGACGC...............2811.0010100000000
droPer2
CT-GCACAGTGTCTCACATAAATTT-ATGGCAA------------CCAATTATTCAATTT--CAGCCATTTGTAA--CCG-------AAAATGGGAGGCAACTCC-------------------------------------------------AAAAAGATTTATCTAAGCACTTTTATTTCT-----------TGGTTT--CTTAAGATTTCTTTTT------CAAGATATCGTTGG--AACTTTTTTTGGATGC-------------------------------------------------------------------------------------A-------------------------------------------------AAT---TATGCTTAGATTTTGGGCTGGGTTTT---------ATTTTT-TT----TTGTTCGT--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------TGTTTCTCATG-------A---TGT---------TCTCAT--G--------------------------------------------ATT-ATTG------CAGCGACAATGGTTCGGTGGCTTCCGATCTGACGCGAATGTATGTGAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................AAAATGGGAGGCAACTCC-------------------------------------------------AAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
........................................................................................................................................................................................................................TTT------CAAGATATCGTTGG--AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGATTTTGGGCTGGGTTTT---------AT...........................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------A---TGT---------TCTCAT--G--------------------------------------------ATT-ATTG------C.................................................2011.001010000
....................................................................................................................................................................ATCTAAGCACTTTTATTTCT-----------TGGTTT--CTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
........................T-ATGGCAA------------CCAATTATTCAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGACGCGAATGTATGTGAGC.2411.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGT--TTGGGGTCTTGTGAG.......................................................................................................................................................................................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGT--TTGGGGTCTTGTGAAGAT-------------------------------------------------------------.......................................................................................................................................................2311.001000100
.....................................................................................................................................................................................................................................ATATCGTTGG--AACTTTTTTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droWil2
TT-CAACAGTGTCTCACATAAATTTTCTGTCAAGACAAGCTAAGGGCAATTATTCAATTT--AAACAAAAA--------------------TCC------------------------------------------------------------AAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAAAAAATTTTTTGGGGTTTGTTTTGCGTTTTACGATTGGAATT---TGTTGTTGTTTTGG-------TTT-------TTT----TTA-------TTTTTCAT------------------------------------------------------------------------A--TGTT-----TGCTA------------------------------TGGGGCTACATTCAACATTTAACGTAAATCCAAAT------CTTTGATTCTTAATCG--CCAGCAACGACAATGTTTCGGTGGCTTCCGATTTGACGCGAATGTATGTCAGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TTTTTCAT------------------------------------------------------------------------A--TGTT-----TGCTA------------------------------TGGGG............................................................................................................2411.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTAATCG--CCAGCAACGA............................................2111.00100100
...................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCGTTTTACGATTGGAATT---................................................................................................................................................................................................................................................................................................2411.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTCCGATTTGACGC...............1911.00100001
droVir3
TT-ATACAGTGTCTCACATAAATTT-ATGGCGG------------GCAATTATTCAATTT--AAGGCGAATTCGAATCCA----ACCAAAATTGGAGGCGGTTGCATGTCCAACTCTAATATTA-TTTATT------TCCATTAGGCTACCTT--TAAAGG----------CGC-----------------------------------------------------------------GA--CT-ATTTGAAATGCAA-------------------------------------------------------------------------------------------------------------------------------------AAT---ACTTATCG-------GGCGGTATTTTGCTTGTTT----TTC-------TTTTTCAT--T-------TTGAACAAAT-----CGATTTTCATTCAATT----------TCGTCGGGT-TTCTACC--AAG--TTAA-----TGCTTATGTTTGCCGATGA------CTTTAACATC------------------------------------------TTCAATTTTA-ATCG---CAGCAGCGACAATGTGTCAGTGGCCTCGGACTTGACCCGCATGTATGTCAGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATT----------TCGTCGGGT-TTCTACC--AAG--T............................................................................................................................................................2612.002000000000000000000000001001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTTGACCCGCATGTATGT.....2212.002000000000000000000000010000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------------------------------------------------------------------------AAT---ACTTATCG-------GGCGGT...........................................................................................................................................................................................................................................................................1912.002000000000000000000000000000010000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----TGCTTATGTTTGCCGATGA------CTTT.......................................................................................................................2712.002000000000000000000000000002000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ATTTGAAATGCAA-------------------------------------------------------------------------------------------------------------------------------------AAT---ACTTATCG-------GGC..............................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTA-ATCG---CAGCAGCGACAATGTGTC...................................2711.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCGATGA------CTTTAACATC------------------------------------------TTCAATT................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATCG---CAGCAGCGACAATGTGTCAGT................................2811.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATCG---CAGCAGCGACAATGTGTCA..................................2611.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC--AAG--TTAA-----TGCTTATGTT..........................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................TTAGGCTACCTT--TAAAGG----------CGC-----------------------------------------------------------------GA--CT-........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................TAAAGG----------CGC-----------------------------------------------------------------GA--CT-ATTTGAAATGCAA-------------------------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGGGT-TTCTACC--AAG--TTAA-----TGCTT...............................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTCTACC--AAG--TTAA-----TGCTTATGTTT.........................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----TGCTTATGTTTGCCGATGA------CTT........................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACATC------------------------------------------TTCAATTTTA-ATCG---CAGCAG...............................................2711.001000010000000000000000000000000000000000000000000000000000000000
......................................................CAATTT--AAGGCGAATTCGAATCCA----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGGCCTCGGACTT....................1811.001000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATCG---CAGCAGCGACAATGTGTCAG.................................2711.001000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................AATGCAA-------------------------------------------------------------------------------------------------------------------------------------AAT---ACTTATCG-------GGCGGT...........................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGGTATTTTGCTTGTTT----TTC-------TTTT............................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................ATCCA----ACCAAAATTGGAGGCGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................TCCATTAGGCTACCTT--TAAAGG----------CGC-----------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGACAATGTGTCAGTGGCCT...........................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTGTCAGTGGCCTC..........................2011.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------TTTTTCAT--T-------TTGAACAA......................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACC--AAG--TTAA-----TGCTTATGTTTGCCGA....................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------TCGTCGGGT-TTCTACC--AAG--TTAA-----TGCT................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAAT-----CGATTTTCATT....................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATTCAATT----------TCGTCGGGT-TTCTAC.....................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TGCTTATGTTTGCCGATGA------C..........................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAATGTGTCAGTGGCCTCGGAC......................2611.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGATGA------CTTTAACATC------------------------------------------TTCAAT.................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--TTAA-----TGCTTATGTTTGC.......................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTA-ATCG---CAGCAGCGACAATG.......................................2511.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----TGCTTATGTTTGCCGATGA------CTTT.......................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ATGCAA-------------------------------------------------------------------------------------------------------------------------------------AAT---ACTTATCG-------GGCGGTAT.........................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTTTA-ATCG---CAGCAGCGACAATG.......................................2711.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCGGACTTGACCCGCATGT.........2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACATC------------------------------------------TTCAATTTTA-ATCG---CAGCAGC..............................................2811.001000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCGGACTTGACCCGCAT...........2011.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
TTTCGACAGTGTCTCACATAAATTT-ATGGCGG------------GCAATTATTCAATTT--AAGGCGAAATCGATTTCA----GCCAAATTTGGAGGCGGTTGCTTGTCCAACTCTAATATTAATTTATTTATCTATCCATCGGGCGGTCTCAAAAAAGG----------CGC-----------------------------------------------------------------GT--CT-ATTTGGAATGCAAATC-------GGGTGCA---TTTGTATTTGGACACTGAAATTCTGTTAACTGATTTTATTTCAGATTATTTATTTATT--TAC-----------------------------------------------------------------------------ATTTTGTTTGTTT----TGC-------TTTTTTGT--T------------------------------------------------TGGGCTTGTTATTTAC----CC--AGTT-----TGCTAATGCTTGCCGATGT------CTTTTACATC------------------------------------------TTCAATTCTC-ATCG---CAGCAGTGACAATGTCTCAGTGGCTTCCGACTTGACCCGCATGTATGTCAGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATGTCTCAGTGGCTTCCGACT.....................2616.006600000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACATC------------------------------------------TTCAATTCTC-ATCG---CAGCAG...............................................2812.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTCTC-ATCG---CAGCAGTGACA..........................................2512.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTAC----CC--AGTT-----TGCTAATGCT..........................................................................................................................................2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----CC--AGTT-----TGCTAATGCTTGCCGATGT------...........................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGTGGCTTCCGACTTGACCCG..............2511.001100000
...........................................................................................................................................................................................................................................................................................................................................TTTATT--TAC-----------------------------------------------------------------------------ATTTTGTTTGTTT----TGC-------T...............................................................................................................................................................................................................................................2611.001100000
......................TTT-ATGGCGG------------GCAATTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
................................................ATTATTCAATTT--AAGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAGTGGCTTCCGACT.....................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------ATTTTGTTTGTTT----TGC-------TTTTTTGT--......................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACTTGACCCGCATGTATGTC....2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTC-ATCG---CAGCAGTGACA..........................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTCTCAGTGGCTTCCGA.......................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTC-ATCG---CAGCAGTGACAATGTCTCAG.................................2911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----CC--AGTT-----TGCTAATGCTTGCCGATG..................................................................................................................................2711.001100000
.........................................................................................................................................TCCATCGGGCGGTCTCAAAAAAGG----------CGC-----------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTCTCAGTGGCTTCCGA.......................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAC----CC--AGTT-----TGCTAATGCTTGCCGAT...................................................................................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAC----CC--AGTT-----TGCTAATGCTTGCCGATG..................................................................................................................................2911.001100000
................................................................................................................................ATTTATCTATCCATCGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
TT-TTACAGTGTCTCACATAAATTT-ATGGCGG------------ACAATTATTCAATTT--AAGGCGAATTCGA--TTTTCAATCCAAAATTGGAGGCGGTTGCATGTCGAACTCTAATATTA-TTTAAT------TGTGTGGTGCTGCCGT--TAAAGG----------CGC-----------------------------------------------------------------GG--CT-ATTTGGGATGGAAATTACTAACAGGGTTCTTCATT----TATGCTT---------------------------------------------AGTATA-------------------------------------------------AA-------TGTTGTTTTTT-------TTT------------------------------------------------------------------------G----------TTGT--TACAAGTTAAT--ACCGATGTT-----TGCTAATGTTTGCCGATGT------CTTTAACATC------------------------------------------TTCAATTCTT-ATCG---CAGCAGCGACAATGTTTCAGTGGCTTCGGACTTGACCCGCATGTATGTCAGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 10:57 AM