ID:

dsi_12293

Coordinate:

2r:5409855-5409923 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5409620_5409854_-]; CDS [2r_5409620_5409854_-]; CDS [2r_5409924_5410063_-]; exon [2r_5409924_5410063_-]; intron [2r_5409855_5409923_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------################################################## TTGTGATCTTCCTGCACTCTCGAACGGACGTGCCGCCCAGCTACCACCACGTAAGAAGACCCAAACCAGCACCACTGTGTGCTGATTAGACTCGAATGGGTATCACCCTTCCTTCCTAGCTGTTTATTATCCTCACGTTTTTCAGTTCCATGGTGACTCTCTGGCTCGC ************************************************.((.....(((((((.((((((......)))))).)).........)))))...............)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR618934 dsim w501 ovaries	GSM343915 embryo	M023 head	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
................................CCGCCCAGCTACCACCAC.......................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................GGTTCCATGGTGAGTCTC........	18	2	2	0.50	1	0	1	0	0	0	0
....................................................................................ATTAGACTCGGTTTGGTATC.................................................................	20	3	8	0.25	2	0	0	0	2	0	0
.............................................................................................................................................TCAGTTACTTGGTGATTCTCT.......	21	3	5	0.20	1	0	0	1	0	0	0
....................................................................................ATGAGACTTGATTGGGTATC.................................................................	20	3	11	0.09	1	0	0	1	0	0	0
...................TCGAACGCACTTGCGGCCC...................................................................................................................................	19	3	13	0.08	1	0	0	0	0	1	0
.........................................................................................................................................................TGACTCTCTAGCTTGC	16	2	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

AACACTAGAAGGACGTGAGAGCTTGCCTGCACGGCGGGTCGATGGTGGTGCATTCTTCTGGGTTTGGTCGTGGTGACACACGACTAATCTGAGCTTACCCATAGTGGGAAGGAAGGATCGACAAATAATAGGAGTGCAAAAAGTCAAGGTACCACTGAGAGACCGAGCG ************************************************.((.....(((((((.((((((......)))))).)).........)))))...............)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
............................................................................................................AAGTAAAGATGGACAAATAATAG......................................	23	3	4	0.25	1	0	1	0	0	0	0
...................AGGTTGCCTGCACCGCGGGC..................................................................................................................................	20	3	4	0.25	1	1	0	0	0	0	0
........................................................TCTGAGTTTGGCCGTGG................................................................................................	17	2	10	0.10	1	1	0	0	0	0	0
....................................................................................................................................AGTGCAAACAGTCTAGTTAC.................	20	3	12	0.08	1	0	0	1	0	0	0
.........................................................................................................................................AAAAAGCCAAGATACCAATG............	20	3	14	0.07	1	0	0	0	1	0	0
...........................................................................................................................................AAAGTCAAGGGACCA...............	15	1	16	0.06	1	0	0	0	0	1	0
.......................................................................................................GGGGGAAGGCAGGATC..................................................	16	2	18	0.06	1	0	0	0	0	0	1
...............................................................................................................GGAGGATCGACAGATA..........................................	16	2	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................ACAAAGTCAAGGTAC.................	15	1	20	0.05	1	0	0	1	0	0	0

Generated: 04/23/2015 at 01:49 PM