ID:

dsi_12285

 Coordinate:

2l:271289-271438 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0 0.1 0.4

Flybase annnotation

exon [2l_271068_271288_-]; CDS [2l_271068_271288_-]; intron [2l_271289_271762_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAACTACTTGAATCCCTCCAAATTCAGTGCTTTACTAACAAACTCACGTGTTTTCCTTATTGCTGCTGAAATTGTACAGGAAGTGCTTGTGCAACGTTTTTTCGCTAACTGTAATTCCTTCCACTCCACTTAAGCAACCCTTCAATTCTAGCCGCATTCGCATTATCTCACACACGTCAAATGCTCTTGCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGG
**********************************************************************************************************.................................................((....)).....................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 M024
male body		 M053
female body
 M023
head
 M025
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................................................................................................TGTACTATATTGTATCGCTGGT............... 22 0 1 6.00 6 6 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TATATTGTATCGCTGGTCAAC........... 21 0 1 5.00 5 4 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATATTGTATCGCTGGTCAACG.......... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACTATATTGTATCGCTGGTC.............. 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCACTGTACTATATTGTA....................... 22 0 1 4.00 4 1 0 3 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAAC........... 22 0 1 3.00 3 2 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTATATTGTATCGCTGGTCA............. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTACTATATTGTATCGCTGGTC.............. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACTATATTGTATCGCTGGTCA............. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACTGTATTGTATCGCTGGTC.............. 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TATTGTATCGCTGGTCAACG.......... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCGCTGGTCAACGATTTCGTG.. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTGGTCAACGATTTCGTGG. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGTATCGCTGGTCAACGATT....... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAA............ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................CTAACTGTAATTCCTTCCACT........................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................................GATAATTCAGGCACTGTA................................. 18 0 1 2.00 2 0 0 1 0 0 1 0 0 0
...................................................................................................................................................................................................................................TCGCTGGTCAACGATTTC..... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTCAGGCACTGTACTATATTGTATC..................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................CTGGTCAACGATTTCGTG.. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................TACTAACAAACTCACGTG...................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................CTATATTGTATCGCTGGTC.............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGTATCGCTGGTCAACGAT........ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATAATTCAGGCACTGTACTAT............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGTACTATATTGTATCGCTGG................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........GAATCCGTCCAAATTCCGTG........................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GTTGTATCGCTGGTCAAC........... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................CATTATCTCACACACGTCAAAT.................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................GTTTTCCTTATTGCTGCTGA................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TACTGTATTGAATCGCTGGTC.............. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................GCTGCTGAAATTGTACAG......................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAACT.......... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTGTACTATATTGTATCGCT.................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................ATTCTAGCCGCATTCGCATTA................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............ATCCCTCCAAATTCAGTGCTT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CACTGTACTATATTGTATCGC................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................TTTTCCTTATTGCTGCTGAAA................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ACTGTACTATATTGTATCGCTGGTC.............. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGATAATTCAGGCACTG................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................CTAACAAACTCACGTGTTTTCC................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACTATATTGTATCGCTGGTCAC............ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AATTCAGGCACTGTACTATATTGT........................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACTATGTTGTATCGCTGGTC.............. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCACTGTACTGTATTGTATC..................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................AGATAATTCAGGCACTGTACT............................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATATTGTATCGCTGGTCAAC........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................AACTGTAATTCCTTCCAC............................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................TAATTCCTTCCACTCCACTTA.................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTGTATTGTATCGCTGGTCAAC........... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGTATCGCTGGTCAACGATTTCG.... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ACTGTACTATATTGTATCGCT.................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................CTTACAGATAATTCAGGCA...................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTCGCATTATCTCACACACGTC...................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTCAGGCACTGTACTATATTGT........................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAACG.......... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................TGTGCAACGTTTTTTCGCTAAC........................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ACTGTACTATATTGTATCGCTG................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................ACTATATTGTATCGCTGGTCA............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................ATTGCTGCTGAAATTGTACAG......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................ATTCAGGCACTGTACTATAT........................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GCACTGTACTATATTGTATCGCTGGT............... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TACTATATTGTATCGCTGGGCAAC........... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TATATTGTATCGCTGGTCAA............ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................CAGGAAGTGCTTGTGCAACGT....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................TTATCTCACACACGTCAAATG................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTGGTCAACGATTTCGTGGG 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................CTTACAGATAGTTCAGGCACTG................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCACTGTACTATATTGTATC..................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTGTACTATATTGTATCGC................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTATATTGTATCGCTGGT............... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TATATTGTATCGCTGGTC.............. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................AGGAAGTGTTTGTGAAAGGTTT..................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACTATATTGTGTCGCTGGTCGT............ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................TAACAAACTCTCGTGTGTA.................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGTTGATGAACTTAGGGAGGTTTAAGTCACGAAATGATTGTTTGAGTGCACAAAAGGAATAACGACGACTTTAACATGTCCTTCACGAACACGTTGCAAAAAAGCGATTGACATTAAGGAAGGTGAGGTGAATTCGTTGGGAAGTTAAGATCGGCGTAAGCGTAATAGAGTGTGTGCAGTTTACGAGAACGTGAATGTCTATTAAGTCCGTGACATGATATAACATAGCGACCAGTTGCTAAAGCACCC
******************************************************************.................................................((....)).....................********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
....................................................................................................................................................................................................................................GCGACCAGTTGCTAAAGCACC. 21 0 1 5.00 5 0 1 4 0 0 0 0 0 0
....................................................................................................................................................................................................................GACATGATATAACATAGCGAC................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GCGACCAGTTGCTAAAGCGCC. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................AAAGCGATTGACATTAAGGAA................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................GTTGGGAAGTTAAGATCGGCG............................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................CGACGACTTTAACATGTCCTTC..................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................TAAGTCACGAAATGATTGTTT.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
TCGTTGATGAACTTAGGGAGG..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CCGTGACATGATATAACATAGC.................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................TTAAGGAAGGTGAGGTGAATT................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATAGCGACCAGTTGCTAAAGC.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GATATAACATAGCGACCAGT............. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................ATTGAGGAAGGTGAGGTGAATT................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGACATGATATAACATAGCGAC................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................CATTTAGGAAGGTGACGGGAA..................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TGGGAAGTTAAGATCGGCGTA........................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................TTGACATTAAGGAAGGTGAGGTGAATT................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAGTCCGTGACATGATATAAC......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTGCAGTTTGCGAGAACGTGA....................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................TTAAGGGAGGTGAGGTGAAT.................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GATATAACATAGCGACCAGTT............ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................CGTTGGGAAGTTAAGATCGGC.............................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................CGACGACTTTAACATGTCCTT...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATAACATAGCGACCAGTT............ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GACATGATATAACATAGCGACC................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................GTCACGAAATGATTGTTTGA............................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................GGAGGTTTAAGTCGCGAAATGGT................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................GTCATGAAAAGATGGTTTGAGT.......................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................GCGTAATAGAGTGTGTGCAGT..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................AAGGAATCACGACGACTT.................................................................................................................................................................................. 18 1 3 0.67 2 0 0 0 0 1 1 0 0 0
..............................................................................................................GATATTACGGAAGGGGAGGT........................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0
.....................................AATGTTTGAGAGCAC...................................................................................................................................................................................................... 15 2 20 0.10 2 0 0 0 0 1 0 0 1 0
........................................................................................AACAAGTTGCAGAAAAGC................................................................................................................................................ 18 2 11 0.09 1 0 0 0 0 0 0 1 0 0
.....GAAGAACTTAGGGAG...................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0
..................................ATGATTGTTTTAGTG......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
...................................................................................GCATGAACAGGTTGCAAAA.................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................GTCTACGAGTTCGTGAATGT................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:271239-271488 - dsi_12285 A-GCAA-CTACTT--------------------------------------GAATCCCTC-CAAA----------------TTCAGT---------G-------------------CTTT---------------AC--------TAACAAACTCACGTGTTTTC-CTTATTG----------------CTGCTGAAA-TTGT--ACAGGAAGTGC-------TTGTGCAACGTTTTTTCGCTAACTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAT-TCTAGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGG
droSec2 scaffold_841:604-854 - A-GCAA-CTACTT--------------------------------------CAATCCCTC-CAAA----------------TTCAGT---------G-------------------CTTT---------------AC--------TAACAAACTCACGTCTTACCTCTTATTG----------------CTGCTGAAA-TTGT--ACAGGAAATGC-------TTGTGCAACGTTTTTTCGCTAACTG-----AAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAT-TCTAGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGG
dm3 chr2L:284919-285169 - A-GCAA-CTAATT--------------------------------------GAATCCCTC-CAAA----------------TTCAGT---------G-------------------CTTT---------------AC--------TAACAAACTCACATCTCGCCTCCTATTG----------------TCGCTGAAA-TTGT--ACAGGAAATGC-------TTGTGCAACGTTTTTTCGCTAACTG-----TAATTCCT--TCCACTTCACTT------------AAGCAACCC-TTCAAA-TCTAGCCGCTTTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGG
droEre2 scaffold_4929:336048-336308 - AAGCAA-ATACTT--------------------------------------CAATACCCC-CAAA----------------ATCACT---------G-------------------CCTTTT---AAACTTTTAAAC--------TAACGAACC--CGTCTTACCTCTTAATG----------------TCGCTAGCA-TTTA--ACAGGAAATGC------TTTGTGCAACGTTTTTTCGCTGGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAA-T--AGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGG
droYak3 2L:279109-279310 - C------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTACCTC-TAATG----------------TCGCCAACA-TTTT--ACAGGAAATGC------CTGGTGCTGCGCGTTTTCGCTAGCTG-----TAATTCCT--TCCACTCCACTT------------GAGCCACCC-TTCAAA-TCTAGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTC-T--GCACTTACAGATAATTCAGGCACTGTACTACATAGTGTCGCTGGTCAACGATTTCGTGGG
droEug1 scf7180000409554:1031118-1031381 - A-GTGAAATATTTATCTTTATCTAGGACCACAAATATAATCCAGTTAAATAAAATTTTCCTCAAG----------------TTGATGATA------------------T--AAAAATTTTTTTAA-----------------------A--------------------------------------------CCAAA-TACT--ACAGGAAGTGC------TTTGAT-GGCCT-TTTTTGCTGGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAA-TTTAACCA------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----TTCTT--CCACTTACAGATAATTCAGGCACTGTACTATACTGTATCGCTCGCCAACGATTTCGTGGG
droBia1 scf7180000302261:3553655-3553873 + A-A-------ATA--------------------------------------TAATCTCTCCCAAA----------------CCGATG---------G-------------------CTTT---------------A---------------------------TC-CCCACTG----------------CCATTTAAA-CTTT--ACAGGAAATGT------GTTGTG-AACTT-TTTTCGCCAGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAA-GCCAGCCG------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTCGTCAACGATTTTGTGGG
droTak1 scf7180000413017:239438-239696 + A-CGAA-ACAC---------------------------------------------------GAAATCTATTTTATA----GGAAAT---------GCTTTGTGAA---------------------ACTTTTATATTTCTATTTT-ATAAAC-----------C-CTTATTG----------------TCACTTAAAATTTTTAGCAGGAAATGC------CTTGTGAAACTTTTTTTCGCCAGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCCCTTCAAAATCCAGCCA------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATCGTATCGCTGGTCAACGATTTTGTGGG
droEle1 scf7180000490454:79559-79843 + A-GAAT-A---------------GAACTAAGAATTCAAATT----------------------------ACTTTACAGAATT-CCTT--GC-----GCTTTGTGAAAAT--AGCTGATCG------------AATAGTAC--TTTTA-AGAAC-----------C---TAGTGTTAGGCCAACGCAAAATCCCTTAAA-TTTT--ACCGGTAATCC-------TTGTGGAACTTGGTTTCGCCAGGTG-----TAATTTCT--TCCACTCCACTT------------AAGCAACCC-TTCAGT-TTCAGCCA------CATTATCTC-----------------------------------------------A--CACACGTCCAATA----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATCGTGTCGCTCGTCAACGATTTTGTGGG
droRho1 scf7180000779917:386173-386349 + A-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTT--TTACAAATTGC------TTTGTGGAACTTTGTTTGGCCAAGTG-----GAAGGAATTATCCACTCCACTT------------AAGCAACCC-TTCAAA-TTCAGACA------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTTGTCAACGATTTTGTGGG
droFic1 scf7180000453904:558542-558798 - A-GTAT-C---------------AGATCAAGCAATACCATCCCATTGAA-----CA-------CT----------------TTGAAAATA------------------T--AACCGCTTTTTTAA-----------------------AGCAC-----------T----A----------AACCCAAAATCCCTAAAC-TTTT--ACAGGAAATGA------TTTGTCAAACTTGTTTTCGCTAGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTTAGA-TTTAGCCA------CATTATCTC-----------------------------------------------A--CACATGTCGACCG----TTCTC--CCACTTACAGATAATTCAGGCACTGTACTATATCGTGTCGCTCGTCAACGATTTCGTGGG
droKik1 scf7180000302401:607176-607334 - G-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATT--TTTGTTTACTGTGCATTAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCATA-TTGAACCA------TATTATCTG-----------------------------------------------A--CACACGTCTATTGTTCGCTTGT--TCACTTGCAGATAATTCAGGCGCTGTACTACACCGTCTCGCTGGTCAACGATTTTGTGGG
droAna3 scaffold_12943:4989894-4990027 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCCT--TCCACTTCAGTTGAATC--CATCAGAACAACCC-TTCA-------GCTA------TATTATCTC-----------------------------------------------AAACACACGTC---TA----CTCTTC-AACTTTGCAGATAATACAGGCCCTGTACTATATCGTCTCTCTGGTCAACGATTTTGTGGG
droBip1 scf7180000395654:52447-52700 - A-GCAA-ACACTC---------------------------------------------CC-CAAA----ACTTAAA-----TGAATCGCGTGCTTTG---CATTCAAATTAAG---CTTC---------------AA--------TAAGAATCT---------------ATT-------------------------A-GTTT--AAAAGAATTTTTTTATATTTGAA-AACTT-TTGTTACT----GTGTATTAATTCCT--TCCACTTCAGTTGTATC--CGTCAGAACAACCC-TTCA-------GCCA------CATTATCTG-----------------------------------------------AAACACACGTC---TC----CTCTTCAACCTTTACAGATAATACAGGCCCTGTACTACATCGTTTCCCTGGTCAACGATTTTGTGGG
dp5 4_group1:4299899-4300068 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TAATTCCT--TCCACTCCACTCCACTGAACAGGCAAACAACCC-TTCAA------------------------CACACAGACAACACGCCACATACGTACGAGTATCTGTCTGACCACCCGTTT---AC--C-----TTCCTTTCC--CCACTTGCAGATAATACAGGCTCTCTACTATATCGTTTCACTCGTCAATGATTTTGTGGG
droPer2 scaffold_5:910534-910703 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TAATTCCT--TCCACTCCACTCCACTGAACAGGCAAACAACCC-TTCAA------------------------CACACAGACAACACGCCACATACGTACGAGTATCTGTCTGACCACCCGTTT---AC--C-----TTCCTTTCC--CCACTTGCAGTTAATACAGGCTCTCTACTATATCGTTTCACTCGTCAATGATTTTGTGGG
droWil2 scf2_1100000004521:5660480-5660622 - T-GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG-----TAATTTAT--TCCAGTCCACTTAACTC--TTGTTAATCAACCC-TTCAGATTTCTGTCT------ACCTATCTA-----------------------------------------------AAC---AG--C--TTG----TTTTT--CCACTTACAGATAATTCAGGCTCTGTATTATATTGTATCGCTGGCCAATGATTTTGTTGG
droVir3 scaffold_12963:8797076-8797173 + T-TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCGCT--TCCCTCTCTCTC---------------------------------------------------------------------------------------------------G--CTCTC--C--TCT----CTCTC--GTACTTACAGATAATACAGGCAGTGTATTACATTGTCTCCCTTGCGAATGACTTTGTGGG
droMoj3 scaffold_6500:2529908-2530051 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCGGTTTG-----CAATTCAT--TCCACTTCAATTG-----TCAGCTAATCAACCC---------------CCTTTTGAGCTATCAG-----------------------------------------------AATAACATGCCT-ATC----TCTTT--GCACTTACAGATAATACAAGCCCTGTATTACGTTGTCTCCCTCGTGAATGATTTTGTGGG
droGri2 scaffold_15252:12989912-12989978 - T-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--ATTTTTGCAGTTAATCCAGGCACTTTATTATATAGTGTCGCTCATCAATGATTTTGTGGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A-GCAA-CTACTT--------------------------------------GAATCCCTC-CAAA----------------TTCAGT---------G-------------------CTTT---------------AC--------TAACAAACTCACGTGTTTTC-CTTATTG----------------CTGCTGAAA-TTGT--ACAGGAAGTGC-------TTGTGCAACGTTTTTTCGCTAACTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAT-TCTAGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTATATTGTATCGCTGGT...............2216.00600000000000006000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTATCGCTGGTCAAC...........2115.00501000000000004000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCGCTGGTCAACG..........2114.00400000000000004000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATATTGTATCGCTGGTC..............2114.00400000000000004000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGCACTGTACTATATTGTA.......................2214.00403000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAAC...........2213.00301000000000002000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCA.............2013.00300000000000003000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATATTGTATCGCTGGTC..............2213.00300000000000003000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATATTGTATCGCTGGTCA.............2213.00300000000000003000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTATCGCTGGTCAACG..........2013.00300000000000003000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGGTCAACGATTTCGTG..2112.00200000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTCAACGATTTCGTGG.1912.00200002000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCGCTGGTCAACGATT.......2112.00200000000000002000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAA............2112.00200000000000002000
.................................................................................................................................................................................................................................................CTAACTG-----TAATTCCT--TCCACT................................................................................................................................................................................................2112.00220000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTCAGGCACTGTA.................................1812.00201100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGGTCAACGATTTC.....1811.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGCACTGTACTATATTGTATC.....................2511.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTCAACGATTTCGTG..1811.00100001000000000000
.......................................................................................................................T---------------AC--------TAACAAACTCACGTG.............................................................................................................................................................................................................................................................................................................1811.00100000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTC..............1911.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCGCTGGTCAACGAT........1911.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTCAGGCACTGTACTAT.............................2111.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTATATTGTATCGCTGG................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................CATTATCTC-----------------------------------------------A--CACACGTCAAAT........................................................................2211.00100001000000000000
...............................................................................................................................................................GTTTTC-CTTATTG----------------CTGCTGA.........................................................................................................................................................................................................................................................................2011.00100010000000000000
............................................................................................................................................................................G----------------CTGCTGAAA-TTGT--ACAG............................................................................................................................................................................................................................................................1811.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAACT..........2311.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTATATTGTATCGCT..................2011.00100001000000000000
.............................................................................................................................................................................................................................................................................................................AT-TCTAGCCGCATTCGCATTA..........................................................................................................................................2111.00100001000000000000
.....................................................ATCCCTC-CAAA----------------TTCAGT---------G-------------------CTT......................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTACTATATTGTATCGC...................2111.00100001000000000000
................................................................................................................................................................TTTTC-CTTATTG----------------CTGCTGAAA-......................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTATATTGTATCGCTGGTC..............2511.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGATAATTCAGGCACTG...................................1811.00110000000000000000
........................................................................................................................................C--------TAACAAACTCACGTGTTTTC-C......................................................................................................................................................................................................................................................................................................2211.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATATTGTATCGCTGGTCAC............2211.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAGGCACTGTACTATATTGT........................2411.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGATAATTCAGGCACTGTACT...............................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCGCTGGTCAAC...........2011.00100000000000001000
...................................................................................................................................................................................................................................................AACTG-----TAATTCCT--TCCAC.................................................................................................................................................................................................1811.00100001000000000000
.............................................................................................................................................................................................................................................................TAATTCCT--TCCACTCCACTT------------A.............................................................................................................................................................................2111.00100001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCGCTGGTCAACGATTTCG....2311.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTATATTGTATCGCT..................2111.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTTACAGATAATTCAGGCA......................................1911.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................TTCGCATTATCTC-----------------------------------------------A--CACACGTC............................................................................2211.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGCACTGTACTATATTGT........................2211.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAACG..........2311.00100001000000000000
................................................................................................................................................................................................................................TGTGCAACGTTTTTTCGCTAAC.......................................................................................................................................................................................................................2211.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTATATTGTATCGCTG.................2211.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATATTGTATCGCTGGTCA.............2111.00100000000000001000
.........................................................................................................................................................................ATTG----------------CTGCTGAAA-TTGT--ACAG............................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGGCACTGTACTATAT...........................2011.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGTACTATATTGTATCGCTGGT...............2611.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTATCGCTGGTCAA............2011.00100000000000001000
..............................................................................................................................................................................................................CAGGAAGTGC-------TTGTGCAACGT...................................................................................................................................................................................................................................2111.00100001000000000000
................................................................................................................................................................................................................................................................................................................................TTATCTC-----------------------------------------------A--CACACGTCAAATG----...................................................................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTCAACGATTTCGTGGG2011.00100001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCACTGTACTATATTGTATC.....................2211.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTATATTGTATCGC...................1911.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGT...............1811.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTATCGCTGGTC..............1811.00100100000000000000
droSec2
A-GCAA-CTACTT--------------------------------------CAATCCCTC-CAAA----------------TTCAGT---------G-------------------CTTT---------------AC--------TAACAAACTCACGTCTTACCTCTTATTG----------------CTGCTGAAA-TTGT--ACAGGAAATGC-------TTGTGCAACGTTTTTTCGCTAACTG-----AAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAT-TCTAGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................GAAA-TTGT--ACAGGAAATGC-------TTT...........................................................................................................................................................................................................................................2220.5010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCGCTGGTCAAC...........1820.5010010
A-GCAA-CTACTT--------------------------------------CAATCCCTC-................................................................................................................................................................................................................................................................................................................................................................................................................2020.5011000
.....................................................................................................................................................AAACTCACGTCTTACCTCTTA...................................................................................................................................................................................................................................................................................................2120.5011000
...............................................................................................................................................................CTTACCTCTTATTG----------------CTGCTG..........................................................................................................................................................................................................................................................................2020.5011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCACTGTACTATATTGTA.......................2020.5010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTATATTGTATCGCTGGT...............2420.5011000
..............................................................................................................................................................TCTTACCTCTTATTG----------------CTGCTG..........................................................................................................................................................................................................................................................................2120.5011000
............................................................................................................................................................................................................................................................................................................................CGCATTATCTC-----------------------------------------------A--CACACGTCA...........................................................................2120.5010100
....................................................AATCCCTC-CAAA----------------TTCAGT---------G-------------------CG.......................................................................................................................................................................................................................................................................................................................................................2120.5010100
..................................................................................................................................................................................................GAAA-TTGT--ACAGGAAATGC-------TT............................................................................................................................................................................................................................................2120.5010100
................................................................................................................................................................................................CTGAAA-TTGT--ACAGGAAATG......................................................................................................................................................................................................................................................2020.5011000
dm3
A-GCAA-CTAATT--------------------------------------GAATCCCTC-CAAA----------------TTCAGT---------G-------------------CTTT---------------AC--------TAACAAACTCACATCTCGCCTCCTATTG----------------TCGCTGAAA-TTGT--ACAGGAAATGC-------TTGTGCAACGTTTTTTCGCTAACTG-----TAATTCCT--TCCACTTCACTT------------AAGCAACCC-TTCAAA-TCTAGCCGCTTTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCACTGTACTATATTGTATC.....................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGTCAACGATTTCGTGG.2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCGCTGGTCAACGAT........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCGCTGGTCAAC...........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATATTGTATCGCTGGTC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCGCTGGTCAACGA.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCGCTGGTCAACGA.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTCAGGCACTGTA.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TCCTATTG----------------TCGCTGAAA-TTGT--G...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCAACGATTTCGTGGG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTATCGCTGGTCAA............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAAC...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCAACGATTTCGTG..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCA.............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................ATCTCGCCTCCTATTG----------------TCGCT...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TAATTCAGGCACTGTACTATATTGT........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCGCTGGTCA.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTATCGCTGGTCAACG..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCGCTGGTCAACGA.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AA-TTGT--ACAGGAAATGC-------T.............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATATTGTATCGCTGGTC..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TATCTC-----------------------------------------------A--CACACGTCAAATG----CT.................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGCACTGTACTATATTGTATC.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGGTCAACGATTTCGTGG.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCACTGTACTATATTGTA.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................A--CACACGTCAAATG----CTCTT--G...........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATATTGTATCGCTGGTC..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATATTGTATCGCTGGTCAAC...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAGCAA-ATACTT--------------------------------------CAATACCCC-CAAA----------------ATCACT---------G-------------------CCTTTT---AAACTTTTAAAC--------TAACGAACC--CGTCTTACCTCTTAATG----------------TCGCTAGCA-TTTA--ACAGGAAATGC------TTTGTGCAACGTTTTTTCGCTGGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAA-T--AGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--GCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTGGTCAACGATTTCGTGGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................TTCGCTGGCTG-----TAATTCCT--TC....................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................TTTGTGCAACGTTTTTTCGC...........................................................................................................................................................................................................................2011.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCGCTGGTCAACGATTTCGTG..2511.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTATCGCTGGTCAAC...........1911.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGGTCAACGATTTCGTG..2111.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTC..............1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGTCAAC...........2211.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCAACGATTTCGTGG.2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATTGTATCGCTGGT...............1811.0010000010
droYak3
C------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTACCTC-TAATG----------------TCGCCAACA-TTTT--ACAGGAAATGC------CTGGTGCTGCGCGTTTTCGCTAGCTG-----TAATTCCT--TCCACTCCACTT------------GAGCCACCC-TTCAAA-TCTAGCCGCATTCGCATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTC-T--GCACTTACAGATAATTCAGGCACTGTACTACATAGTGTCGCTGGTCAACGATTTCGTGGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACATAGTGTCGCTGGT...............21122.0022050000170000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTACATAGTGTCGCT..................21113.0013000000130000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACATAGTGTCGCTGGTC..............2219.00932000040000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTACATAGTGTCGCTGGT...............2418.00802000060000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACATAGTGTCGCTG.................1915.00501000040000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACATAGTGTCGCTGGTCAAC...........2514.00402000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTACATAGTGTCGCTG.................2213.00301000020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTACATAGTGTCGCTG.................2113.00301000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATAGTGTCGCTGGTCAAC...........2213.00300000030000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATAGTGTCGCTGGTCA.............2012.00200000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAGTGTCGCTGGTCAAC...........2112.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACATAGTGTCGCTGGTC..............2012.00210000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTACATAGTGTCGCTG.................2012.00201000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGGTCAACGATTTCGT...2112.00201000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTACATAGTGTCGCTGGT...............2312.00200010010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAGGCACTGTACTACATAGTGT......................2612.00202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACATAGTGTCGCTGGTC..............2112.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACATAGTGTCGCTGGT...............1912.00200000020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGTCGCTGGTCAACGAT........2112.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTCAGGCACTGTACTACATAGT........................2611.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATAGTGTCGCTGGTC..............1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACATAGTGTCGCTGGTCAA............2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGGTCAACGATTTCGTG..2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTACATAGTGTCGCT..................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTGTCGCTGGTCAAC...........1911.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTACATAGTGTCGCTGGTCAAC...........2711.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGTCGCTGGTCAACGATTTCGTGG.2811.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATAGTGTCGCTGGT...............1811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATAGTGTCGCTGGTCAAC...........2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATAGTGTCGCTGGTCAA............2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTACTACATAGTGTCGCG..................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAGTGTCGCTGGTCAACGATT.......2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCGCTGGTCAACGATTTC.....2211.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACATAGTGTCGCTGG................2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCGCTGGTCAACGATTTCGT...2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACATAGTGTCGCTGT................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTACATAGTGTCGCTGGTC..............2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTACATAGTGTCGCTGG................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACATAGTGTCGCTGGTCAACGATTT......2911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGCACTGTACTACATAGT........................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAGTGTCGCTGGTCAACG..........2211.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTGTCGCTGGTCAACGA.........2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTACTACATAGTGTCGCTGGTC..............2511.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTGTCGCTGGTCAACGATT.......2311.00100000010000
droEug1
A-GTGAAATATTTATCTTTATCTAGGACCACAAATATAATCCAGTTAAATAAAATTTTCCTCAAG----------------TTGATGATA------------------T--AAAAATTTTTTTAA-----------------------A--------------------------------------------CCAAA-TACT--ACAGGAAGTGC------TTTGAT-GGCCT-TTTTTGCTGGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAA-TTTAACCA------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----TTCTT--CCACTTACAGATAATTCAGGCACTGTACTATACTGTATCGCTCGCCAACGATTTCGTGGGSizeHit CountTotal NormTotal
No Reads
droBia1
A-A-------ATA--------------------------------------TAATCTCTCCCAAA----------------CCGATG---------G-------------------CTTT---------------A---------------------------TC-CCCACTG----------------CCATTTAAA-CTTT--ACAGGAAATGT------GTTGTG-AACTT-TTTTCGCCAGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCAAA-GCCAGCCG------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTCGTCAACGATTTTGTGGGSizeHit CountTotal NormTotal
No Reads
droTak1
A-CGAA-ACAC---------------------------------------------------GAAATCTATTTTATA----GGAAAT---------GCTTTGTGAA---------------------ACTTTTATATTTCTATTTT-ATAAAC-----------C-CTTATTG----------------TCACTTAAAATTTTTAGCAGGAAATGC------CTTGTGAAACTTTTTTTCGCCAGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCCCTTCAAAATCCAGCCA------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATCGTATCGCTGGTCAACGATTTTGTGGGSizeHit CountTotal NormTotal
No Reads
droEle1
A-GAAT-A---------------GAACTAAGAATTCAAATT----------------------------ACTTTACAGAATT-CCTT--GC-----GCTTTGTGAAAAT--AGCTGATCG------------AATAGTAC--TTTTA-AGAAC-----------C---TAGTGTTAGGCCAACGCAAAATCCCTTAAA-TTTT--ACCGGTAATCC-------TTGTGGAACTTGGTTTCGCCAGGTG-----TAATTTCT--TCCACTCCACTT------------AAGCAACCC-TTCAGT-TTCAGCCA------CATTATCTC-----------------------------------------------A--CACACGTCCAATA----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATCGTGTCGCTCGTCAACGATTTTGTGGGSizeHit CountTotal NormTotal
No Reads
droRho1
A-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTT--TTACAAATTGC------TTTGTGGAACTTTGTTTGGCCAAGTG-----GAAGGAATTATCCACTCCACTT------------AAGCAACCC-TTCAAA-TTCAGACA------CATTATCTC-----------------------------------------------A--CACACGTCAAATG----CTCTT--CCACTTACAGATAATTCAGGCACTGTACTATATTGTATCGCTTGTCAACGATTTTGTGGGSizeHit CountTotal NormTotal
No Reads
droFic1
A-GTAT-C---------------AGATCAAGCAATACCATCCCATTGAA-----CA-------CT----------------TTGAAAATA------------------T--AACCGCTTTTTTAA-----------------------AGCAC-----------T----A----------AACCCAAAATCCCTAAAC-TTTT--ACAGGAAATGA------TTTGTCAAACTTGTTTTCGCTAGCTG-----TAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTTAGA-TTTAGCCA------CATTATCTC-----------------------------------------------A--CACATGTCGACCG----TTCTC--CCACTTACAGATAATTCAGGCACTGTACTATATCGTGTCGCTCGTCAACGATTTCGTGGGSizeHit CountTotal NormTotal
No Reads
droKik1
G-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATT--TTTGTTTACTGTGCATTAATTCCT--TCCACTCCACTT------------AAGCAACCC-TTCATA-TTGAACCA------TATTATCTG-----------------------------------------------A--CACACGTCTATTGTTCGCTTGT--TCACTTGCAGATAATTCAGGCGCTGTACTACACCGTCTCGCTGGTCAACGATTTTGTGGGSizeHit CountTotal NormTotal
No Reads
droAna3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCCT--TCCACTTCAGTTGAATC--CATCAGAACAACCC-TTCA-------GCTA------TATTATCTC-----------------------------------------------AAACACACGTC---TA----CTCTTC-AACTTTGCAGATAATACAGGCCCTGTACTATATCGTCTCTCTGGTCAACGATTTTGTGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACTATATCGTCTCTCTGGTCAACG..........2812.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCTGTACTATATCGTCT......................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATATCGTCTCTCTGGT...............2111.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCCTGTACTATATCGTCTCTCTGGT...............2911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCGTCTCTCTGGTCAAC...........2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCCTGTACTATATCGT........................2011.001000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTACTATATCGTCTCTCTGGT...............2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTGGTCAACGATTTTGTGGG2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACAGGCCCTGTACT...............................1911.001010000
droBip1
A-GCAA-ACACTC---------------------------------------------CC-CAAA----ACTTAAA-----TGAATCGCGTGCTTTG---CATTCAAATTAAG---CTTC---------------AA--------TAAGAATCT---------------ATT-------------------------A-GTTT--AAAAGAATTTTTTTATATTTGAA-AACTT-TTGTTACT----GTGTATTAATTCCT--TCCACTTCAGTTGTATC--CGTCAGAACAACCC-TTCA-------GCCA------CATTATCTG-----------------------------------------------AAACACACGTC---TC----CTCTTCAACCTTTACAGATAATACAGGCCCTGTACTACATCGTTTCCCTGGTCAACGATTTTGTGGGSizeHit CountTotal NormTotal
No Reads
dp5
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TAATTCCT--TCCACTCCACTCCACTGAACAGGCAAACAACCC-TTCAA------------------------CACACAGACAACACGCCACATACGTACGAGTATCTGTCTGACCACCCGTTT---AC--C-----TTCCTTTCC--CCACTTGCAGATAATACAGGCTCTCTACTATATCGTTTCACTCGTCAATGATTTTGTGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCGTCAATGATTTTGT...1912.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCTCTCTACTATATCGTTTCACTC.................2811.0010001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACTCGTCAATGATTTTGT...2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATCGTTTCACTCGTCAATGA.........2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACAGGCTCTCTACTATATCGTT.......................2711.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACAGGCTCTCTACTATATCGT........................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTCTCTACTATATC..........................1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AATACAGGCTCTCTACTATATC..........................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTCGTCAATGATTTTGT...2311.0010100000000
droPer2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TAATTCCT--TCCACTCCACTCCACTGAACAGGCAAACAACCC-TTCAA------------------------CACACAGACAACACGCCACATACGTACGAGTATCTGTCTGACCACCCGTTT---AC--C-----TTCCTTTCC--CCACTTGCAGTTAATACAGGCTCTCTACTATATCGTTTCACTCGTCAATGATTTTGTGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCGTCAATGATTTTGT...1912.002200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTCGTCAATGATTTTG....2212.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTATATCGTTTCACT..................1811.001100000
.................................................................................................................................................................................................................................................................TCCT--TCCACTCCACTCCACTGA....................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCTCTACTATATCGTTTCACTCGTC..............2811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTCGTCAATGATT.......1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTATATCGTTTCACT..................2011.001100000
droWil2
T-GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG-----TAATTTAT--TCCAGTCCACTTAACTC--TTGTTAATCAACCC-TTCAGATTTCTGTCT------ACCTATCTA-----------------------------------------------AAC---AG--C--TTG----TTTTT--CCACTTACAGATAATTCAGGCTCTGTATTATATTGTATCGCTGGCCAATGATTTTGTTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATTGTATCGCTGGCC..............2014.00430100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATTGTATCGCTGGC...............1912.00200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCGCTGGCCAAT...........2012.00220000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTCAGGCTCTGTAC................................1911.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGTATCGCTGGCC..............1811.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCGCTGGCCAATGAT........2311.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCGCTGGCCAATGAT........2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCGCTGGCCAATGATTTTGTT..2711.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGCTCTGTATTATATTGT........................2211.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGGCTCTGTATTATATTGTATCGCT..................2911.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTCAGGCTCTGTAT................................1911.00110000
droVir3
T-TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCGCT--TCCCTCTCTCTC---------------------------------------------------------------------------------------------------G--CTCTC--C--TCT----CTCTC--GTACTTACAGATAATACAGGCAGTGTATTACATTGTCTCCCTTGCGAATGACTTTGTGGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCGGTTTG-----CAATTCAT--TCCACTTCAATTG-----TCAGCTAATCAACCC---------------CCTTTTGAGCTATCAG-----------------------------------------------AATAACATGCCT-ATC----TCTTT--GCACTTACAGATAATACAAGCCCTGTATTACGTTGTCTCCCTCGTGAATGATTTTGTGGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGTTGTCTCCCTCGT...............1912.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCCCTGTATTACGTTGT........................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTTGTCTCCCTCGTGAAT...........2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTTGTCTCCCTCGTGAATG..........2211.001100000
....................................................................................................................................................................................................................................................................T--TCCACTTCAATTG-----TCAGC...............................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTCGTGAATGATTTTGTG..2211.001100000
droGri2
T-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT--ATTTTTGCAGTTAATCCAGGCACTTTATTATATAGTGTCGCTCATCAATGATTTTGTGGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGTCGCTCATCAATG..........1911.00101

Generated: 05/19/2015 at 01:28 AM