ID:

dsi_12273

 Coordinate:

3l:9165527-9165689 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.7 -6.8 -6.8

Flybase annnotation

five_prime_UTR [3l_9165251_9165764_-]; exon [3l_9165194_9165764_-]

No Repeatable elements found

Sense Strand Reads

#######################################################################################################################################################################################################################################################################
CGTGCGCGTGTGTGTGTGTGCTGTAATTCCATCGCCACTTTCGATTCCGAGTTCGTTAGAAACAGCATTGTTCGACTTTTCTAATAGTAGCCTAGCCCGATTTCAAGTGAAAAAGGATACTCCAACACCATATACTCAATAATTAGTTACAACACCCACTCAACCATACAGCAACAACAAGTTTAACGAGTTTTTTGTATTATCATTACTTAGTTTTTTGGTTAATAAGACACAAGTGAACAGCGAACTGCAGGGGAGCGAGA
************************************************************........(((..((((........((((.......((..((((....))))..))................))))........)))).........................)))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 O001
Testis
 M023
head
 GSM343915
embryo
 M024
male body		 O002
Head
..............................................................................................................................................................................................................................TAATAAGACACAAGTGAACAGCGAAC............... 26 0 1 29.00 29 12 8 0 4 1 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACACAAGTGAACAGCGAACTGCA........... 27 0 1 13.00 13 3 0 1 2 6 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTAATAAGACACAAGTGAACAGCGAAC............... 27 0 1 6.00 6 3 2 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTAATAAGACACAAGTGAACAGC................... 26 0 1 6.00 6 4 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTTTGGTTAATAAGACACAAGTGA........................ 25 0 1 4.00 4 0 0 0 1 0 2 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AACAGCGAACTGCAGGGGAGC.... 21 0 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAGACACAAGTGAACAGCGAACT.............. 23 0 1 3.00 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0
..............TGTGTGCTGTAATTCCATCGC.................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACAAGTGAACAGCGAACTGCA........... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................TCGATTCCGAGTTCGTTAGAAACAGCAT................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................GAACTGCAGGGGAGC.... 15 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGAACAGCGAACTGCAGGGG....... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AATAAGACACAAGTGAACAGCGAAC............... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACACAAGTGAACAGCGAACTGCAGG......... 29 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTAATAAGACACAAGTGAACAGCGAAC............... 30 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TAATAAGACACAAGTGAACA..................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................................AACAGCATTGTTCGACTTTTCTAATA................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTGGTTAATAAGACACAAGTGAACAGC................... 28 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGGTTAATAAGACACAAGTGAACAGC................... 27 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTGAACAGCGAACTGCAGGGG....... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AGTGAACAGCGAACTGC............ 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGTGTGCTGTAATTCCATCGCC................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................GTCCGAGTTCGTTAGAAACAGCATTGT................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................AAACAGCATTGTTCGACT.......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................TGAACAGCGAACTGCAGGGGAGCGAGA 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTTTGGTTAATAAGACACAAGTGAACAGC................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AGCCTAGCCCGATTTCAAGTGAAAAA..................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AACGGCGAACTGCAGGGGAT..... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACACAAGTGAACAGCGA................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CACTCAACCATACAGCAACA....................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTAATAAGACACAAGTGAACAGCGA................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TAATAAGACACAAGTGAACAGCGAACT.............. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................AGTGAACAGCGAACTGCAGGGGAGCG... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAGACACAAGTGAACAGCGAACTGC............ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CACAAGTGAACAGCGAACTGCAGGGGA...... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTAATAAGACACAAGTGAACAGCGAA................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TTCGTTAGAAACAGCA.................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AACAGCGAACTGCAGGGGA...... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............GTGTGTGCTGTAATTCCATC...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................AATAAGACACAAGTGAACAG.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AACAGCGAACTGCAGGG........ 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................AGCAGCATTGTTCGACTTTT....................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......CGTGTGTGTGTGTGCTGT............................................................................................................................................................................................................................................... 18 0 5 1.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 5
.................................................................................................................................................................................................................................................GGCGAGCTGCAGGGGAGCGAG. 21 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................CACTTTCGATTCCGAGTTCGT............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................TAGCCCGATTTCAAGTGAAAA...................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CAAGTGAACGGCGAACTGCAG.......... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AAGTGAAAAAGGATACTCCA........................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AACAGCGAACTGCAGGGGAGTAT.. 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTTTAATAAGACACAAGTGAACAGC................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................ACAGCGAACTGCAGGGGAGC.... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................AAGACACAAGTGAACAGCGAA................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTAAACAGCGAACTGCAGGGG....... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTGGTTAATAAGACACAAGTGAACAGCGA................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................CAGCGAACTGCAGGGGAGC.... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................CACAAGTGAACAGCGAACTGCAGGG........ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAGACACAAGTGAACAGCGAACTGCAGG......... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGGTTAATAAGACACAAGTGA........................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATAAGACACAAGTGAACAGCGAACTGC............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GAACAGCGAACTGCAGGGGAG..... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AGTGAACAGCGAACTGCAGGGGAGCGA.. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......CGTGTGTGTGTGTGCTGTAATT........................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TAATAAGACACAAGTGA........................ 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACACAAGTGAACAGCGT................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................TCGATTCCGAGTTCGTTAGAAACAGCA.................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TGTATTATCATTACTTGGTTTTTTGGT......................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AACAGCGAACTGCAGGGGG...... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................CCGAGTTCGTTAGAAACAGCA.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............GTGTGCTGTAATTCCATCGCC................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................AACAGCGAACTGCAGGGGAGCG... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............GTGTGCTGTAATTCCATCGCCT.................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................TTTTTTGGTTAATAAGACACAAGTGAACA..................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTCCATCGCCACTTTCGATTCCGAG.................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGTTAATAAGACACAAGTGAACAGCGA................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGAACAGCGAACTGCAGGGGAGCGA.. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................CGCCACTTTCGATTCCGAGTTCGTT.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAGGCACAAGTGAACAGCGAACT.............. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ACACAAGTGAGCGGCGAACTGC............ 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................TTTCGATTCCGAGTTCGTTGTA........................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................GTTAGAAACAGCATTGTTCGA............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGAAAAAGGATACTCCAACACCATA................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTCCATCGCCACTTTCGATTCCGAGTT.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAGACACAAGTGAACAGCGAACTGCA........... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GAGTTCGTTAGAAACAGCATTGTTCGACT.......................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CGAGTTCGTTAGAAACAGCAT................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACACAAGTGAACAGCGAACTGC............ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATAAGACACAAGTGAACAGCG.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TGTGTGTGTGCTGTAATTCC......................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTACAACACCCACTCAACCAT................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CACAAGTGAACAGCGAACTGCAGGGG....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTGTGTGTGTGTGCTGTAATT........................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................ACTTTCGATTCCGAGTTCGTT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTGAACAGCGAACTGCAGGG........ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCAAGTGAAAAAGGATACTCCAAC......................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AGCGAACTGCAGGGGAGCGAG. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTGATGGGACACAAGTGAACAGCGAAC............... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTGGTTAATGGGACACAAGT.......................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................TGTGCTGTAATTCCATCGCCACTTT.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACACAAGTGAACAGCGAACTG............. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AACAGCGAACTGCAGGGGAGCGA.. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................CGACTTTTCTAATAGTAGCC........................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................AGTGAAAAAGGATACT.............................................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGGGACACAAGTGAACAGCGA................. 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................TCGCCACTTTCGATTCCGAGTTCGTT.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................TCGATTCCGAGTTCGTTAGAA.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTTTTTGGTTAATAAGACACAAGTGAAC...................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GTGAACAGCAAACTGCAGGGT....... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGAACAGCGAACTGCAGGGGTTT.... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTCAAGTGAAAAAGGATACTCCAACACCA..................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................ACTTTCGATTCCGAGT................................................................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTGGTTAATAAGACACAAGTGAACAG.................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TACAGCAACAACAAGTTTAACGAGTT....................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTGTGTGTGCTGTAATTCCAT....................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTTCGATTCCGAGTTCGTTTT............................................................................................................................................................................................................ 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TGTGTGTGTGCTGTAGTTCCA........................................................................................................................................................................................................................................ 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTTTTTGGTTAATAGGACGCA............................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACACAGGTGAGCGGCGA................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CCCACTCAACCGTAC.............................................................................................. 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................CGATTACAGGTGAAGAAGGA.................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CACGAGTTTGTTGTATAATC........................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................GTACCCTAGCCCGGTT................................................................................................................................................................. 16 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GAACGAGTTGGTTGTATTAT............................................................ 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCACGCGCACACACACACACGACATTAAGGTAGCGGTGAAAGCTAAGGCTCAAGCAATCTTTGTCGTAACAAGCTGAAAAGATTATCATCGGATCGGGCTAAAGTTCACTTTTTCCTATGAGGTTGTGGTATATGAGTTATTAATCAATGTTGTGGGTGAGTTGGTATGTCGTTGTTGTTCAAATTGCTCAAAAAACATAATAGTAATGAATCAAAAAACCAATTATTCTGTGTTCACTTGTCGCTTGACGTCCCCTCGCTCT
***************************************************************************************........(((..((((........((((.......((..((((....))))..))................))))........)))).........................)))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O001
Testis
 O002
Head
.......................................................................................ATCGGATCGGGCTAAAGTTCA........................................................................................................................................................... 21 0 1 5.00 5 2 0 0 0 3 0 0 0 0 0 0 0 0
...............................................................TCGTAACAAGCTGAAAAGATT................................................................................................................................................................................... 21 0 1 5.00 5 0 3 0 0 0 0 1 0 1 0 0 0 0
.........................................................................................CGGATCGGGCTAAAGTTCACT......................................................................................................................................................... 21 0 1 4.00 4 1 0 0 1 2 0 0 0 0 0 0 0 0
......................................................................................CATCGGATCGGGCTAAAGTTC............................................................................................................................................................ 21 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATCGGGCTAAAGTTCACTTT....................................................................................................................................................... 21 0 1 3.00 3 1 0 0 0 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................TGTGGGTGAGTTGGTATGTCG........................................................................................... 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0
........................TTAAGGTAGCGGTGAAAGCTA.......................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTGAGTTGGTATGTCGTTGTT...................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGGATCGGGCTAAAGTTCAC.......................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATCGGATCGGGCTAAAGTTCAC.......................................................................................................................................................... 22 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................CTTTGTCGTAACAAGCTGAAA........................................................................................................................................................................................ 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GGTATGTCGTTGTTGTTCAAA............................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCATCGGATCGGGCTAAAGT.............................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTCGTTGTTGTTCAAATTGCTC......................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................TTCGGATCGGGCTAAAGTTCA........................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GAGTTGGTATGTCGTTGTTGT.................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................TGTCGTAACAAGCTGAAAAGA..................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0
.................................................................................................................................................................TTGGTATGTCGTTGTTGTTCA................................................................................. 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TCGGGCTAAAGTTCACTTTTT..................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0 0
.................................................................................ATTATCATCGGATCGGGCTAAA................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................GGTAGCGGTGAAAGCTAAGGC...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCGGATCGGGCTAAAGTTCACTT........................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGGTTGTGGTATATGAGTT............................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACAAGCTGAAAAGATTATCAT.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGGTTGTGGTATATGAGTTA........................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TATATCATCGGATCGGGCTAAAGT.............................................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGTCGTTGTTGTTCAAATTGCT.......................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................TGACATTAAGGTAGCGGTGAAA.............................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGGTGAGTTGGTATGTCGTTG........................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................TTCGGGTCGGGCTAAAGTTC............................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TGTAGCGGTGAAAGCTAAGGCT..................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................TAGCGGTGAAAGCTAAGGCTCA................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................GAGGTTGTGGTATATGAGTTA........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATGAGTTATTAATCAATGTTG.............................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AATGTTGTGGGTGAGTTGGTA................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................GAGTTGGTATGTCGTTGTTGTT................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................AGTCGGGTCGGGCTAAAGTTCA........................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCATCGGGTCGGGCTAAAGTTC............................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................ATTCGGATCGGGCTAAAGTTC............................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGCGGTGAAAGCTAAGGCTCA................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGGTGTATGAGTTATTAGTCAGT.................................................................................................................. 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................CGGTGAAAGCTAAGGCTCAAG................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................GGCTCAAGCAATCTTTGT....................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................GCTGAAAAGATTATCATCGGA.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................TTCCTATGAGGTTGTGGTATA.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........ACACACACACGACATTAAGGTA....................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................CTCAAGCAATCTTTGTCGTAA.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................ATCATCGGATCGGGCTAAAGTT............................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGGGTGAGTTGGTATGTCGTT......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTCAAATTGCTCAGGAAACATG............................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TTGGGTGAGTTGGTATGTCGTT......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGTATGTCGTTGTTGTTCAAAT.............................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATCATCGGGTCGGGCTGGAGTT............................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TATCGGATCGGGCTAAAGT.............................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............TACACGACATTAAGGTAGCGGT.................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TCTAAGGCTCGAGCAATCTTTG........................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCATCGGATCGGGCTAAAGTT............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATCGTTGTTGTTCAAATTGCTC......................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................TATCATCGGATCGGGCTAAAG............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TTTATCATCGGGTCGGGCTAAA................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CCGTAACAAGCTGAAAAGATT................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................GTGGGTGAGTTGGTATGTCGT.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TTATTAATCAATGTTGTGGGT......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGTCGTTGTTGTTCAAATTGC........................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................CAAGCAATCTTTGTCGTAACA................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGTTGTGGTATATGAGTTATT......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................ATCGGGTCGGGCTGAAGTTC............................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AACAAGCTGAAAAGATTATCAT.............................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGAAAGCTAAGGCTCAAGCAAT............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................AGTTGGTATGTCGTTGTTGTT................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTAACAAGCTGAAAAGAT.................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................GTCGTAACAAGCTGAAAAGAT.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................CGTAACAAGCTGAAAAGATT................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................GATTATCATCGGATCGGGCTA.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCAAATTGCTCAAAAAACA................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................CTAAGGCTCAAGCAATCTTTG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TCGGATCGGGCTAAAGTTCAC.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................AATCAATGTTGTGGGTGAGTT.................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................GATCTGGCTAAAGTTCACTTT....................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................GTAGCGGTGGAAGCTGAGGCT..................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTGTGGGTGAGTTGGTATGT............................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGATGTGGGTTAGTTGGTATG.............................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................AAAAGACTATCATCG............................................................................................................................................................................ 15 1 11 0.18 2 0 0 0 0 0 0 0 0 0 2 0 0 0
....................................................................................................................................................CGATGTGGGTTAGTTGGTAT............................................................................................... 20 3 12 0.17 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.........................................GCTGAGGCTCAAGCAA.............................................................................................................................................................................................................. 16 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................CAGAGGCTCAAGCAATC............................................................................................................................................................................................................ 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AAGCTAGCTTTGTCGTA................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................GGTTGTGCTGTATGAGTA............................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................AAAGTGAAGGCTCAAGC................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9165477-9165739 - dsi_12273 CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--C--GAGTT---------------CGTT-------AGAAACAGCA----TT---GTTC----------------G-------------ACTT--TT--CT-A----ATAGTAGCCTA---GCCC----------------------GATTTCAAGTGA---------------------------------------AAAAGGAT--AC--------------------TCCAACACCA--TATA--CTCAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAACCATACAGCA--ACAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-
droSec2 scaffold_0:1639775-1640036 - CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--C--GAGTT---------------CGTT-------AGGAACAGCA----TT---GTTC----------------A-------------ACTT--TT--CT-A-----AAGTAGCCTA---GCCC----------------------GATTTCAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCAACGCCA--TATA--CTCAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAACCATACAGCA--ACAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-
dm3 chr3L:9394418-9394681 - CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------CCTTTCGATT-----C--C--GAGTT---------------CGTT-------AGGAACAGCA----TT--AGTTC----------------G-------------CCTA--TT--TT-A----GTAGTAGCCTA---GTCC----------------------GATTTTAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCAACACCA--TATA--CTCAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAACCATACAGCA--ACAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAAGAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-
droEre2 scaffold_4784:9389399-9389659 - CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTTGATT-----C--G--GAGTT---------------CCTT-------AGGAACAGCACTATTA---GTTC----------------G-------------CATT--TT--CT-A----CCAGTAGCCTA---GTCC----------------------CTTTTCAAGTGA---------------------------------------AATAGGAT--AC--------------------TCAAACACCA--CATA--CTCAATAAATAGTTACAAC------------------------------AC------------------------CCACTCAACCAC--------ACATCAAGTTTAACGAG--TTT-------TTTGTATCATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAAGGGAGCGAGA-
droYak3 3L:2525989-2526253 + CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--G--GAGTT---------------CGTT-------AGGAACAGCA----TT--AGTTC----------------G-------------CATT--TT--TT-A----CCAGTAGCCTA---GTCC----------------------CTATTTAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCAACTTCA--CATA--CTCAATAAATAGTTACAAC------------------------------AC------------------------CCACTCAACCACACAACA--ACAACAAGTTTAACGAG--TTT-------TTTGTATCATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAGCAA--------CGA---------------------------------ACTGCAGGGAAGCGAGAA
droEug1 scf7180000409824:141128-141376 + CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCT------------------------ACTTTCGATT-----C--G--GAGTT---------------ACCT-------AGGAACAT------TT---GTTC----------------G-------------TTTT--TT--T-------CTAGTAGT--------TC----------------------GCTTAAAAGTGA---------------------------------------AACAGGAT--AC--------------------TCC---TCCA--CATA--CTCAATA------TACAATACTATACTCACACCCT-----------------------------------------TACTC--------AGTAA-CCAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAAAAG--------CGA---------------------------------ACTGCAGGGAA--GAGA-
droBia1 scf7180000300910:1817432-1817666 + CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--G--GAGTT---------------TGCT-------AGGAACAT------TT---GTTC----------------G-------------ACTT--TT--TT------CTAGTAGCCCC---GCCC-------------------------CCAAAGGGA---------------------------------------ATCAGGACATAC--------------------TC------CAC--ATACAC-----------TTACA---------------------------------C------CCCGAA---------CAACCAGTCAA--------TA--CCAACAAGTTTAACGAG--TTT--------TTGTATTATCATTACTTAGTTATTTGGTTAATA------------AA--AC--AAGTGAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-
droTak1 scf7180000415664:238985-239242 + CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--G--GAGTT---------------CGCT-------AGGAACAT------TT---GTTC----------------G-------------CCTT--TT--TT----TACCAGTAGCGTA---GA-----------------------------GTAGTGA---------------------------------------AGCAGGATAAAC--------------------TC------CACATATA--CTCAATATATACTTACA---------------------------------C------CCCCAAACAACCAACCAACCACTCAA--------TAATCCAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTATTTGGTTAATA------------AAACAC--AAGTGAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-
droEle1 scf7180000491193:3645729-3645960 - CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGTC------------------------ACTTTCGATT-----C--G--GAGTT---------------CGCT-------AGGGACAG------TT---GTTC----------------T-------------T-----TT--TTTACTTACCAGTAGTC------------------------------C---CCAAAGTGA---------------------------------------AACAGGAT--AC--------------------TT------CAC--ATA--CTCACAA-----------TAC-------------TA----------AACAC-C----------------------CCACTCAA--------CA----TACAAGTTTAACGAG--ATT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGGAAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-
droRho1 scf7180000777725:10682-10915 - CGTGCGCGTGTGTGTGTG------TGCTGTAAATCCA----TCGCC------------------------ACTTTCGATT-----T--G--GAGTT---------------CGCT-------AGGAACAG------TT---GTTC----------------T-------------TTTT--TT--TT-ACTTACCAGTAGCC------------------------------C---CCAAAGTGA---------------------------------------AACAGGAT--AC--------------------TC------CAC--ATA--CTCACTA-----------CAC-------------TA----------AACAC-C----------------------CCACTCAA--------TA----TACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGGGAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-
droFic1 scf7180000454065:2254017-2254258 + CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTCTCGATT-----C--G--GAGTT---------------TGCT-------AGGAACAG------TT---GTTC----------------G-------------CTTT--TT--TTTAGCTACTAGTAGCA------------------------------C---CCAAAGTGA---------------------------------------AACAGGAT--AC--------------------TC------TAC--ATA--CTCACAACATACTTTC-CC------------------------------AC------------------------CCACTCAA--------TAA---TACAAGTTTAACGAGATTTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAAAAGCAG-----TGG---------------------------------ATTGCA-----GTCAGA-
droKik1 scf7180000302486:1932350-1932546 - CGTGTGTGTGTGTGTGTG------TGCTGTT-TTTCA----TTGCT------------------------ACTTTCGATT-----C--G--GAGTT---------------CGTC-------AGGAACAG------TT---GTTT----------------TAACCCTATAAATGTATT--TT--T-------CTAG---TCCA---ACCC----------------------G-TCTAAAGTAA--------------------------------------------------------------------------------------------------TAGTT-TAAC------------------------------AC------------------------TCACCCA--------------TAACTAGT-TAACG----TTT-------TTAATA--------------TTTTTTGGTTAATAATACCC-----------G--AAGTGAAGAG--------------------------------------------ACTGCA-----GTGAGA-
droAna3 scaffold_13337:16980642-16980984 - CGTGCGCGTGTGTGTGAG------TGCTGTAATTTCT----CCCCCCCTCGCT-------CGTACACAGCACTTTCATATCGTATC--G--GAGTTGGAGTTGAAAAA--AAAAA-------AAAAAAAA------GCTCAGTTCGGAAACAGTTAGGATCC-------------TTCT--TTT-TT----TCCCAAA-------------GGAA-----------------A---CCAAAGTGAAACTGCCATAAGAAAA----------------------AA----GAA----AATACAACAGAAACAACAGCTC------CGC--TCA--CTCACCC-------------------------CCTTTCTCA--CTCAAATCTCACTCC------------------------CCC------AA--ACAACAAGTTTAACGAG--TTTGTATTATTTTGTATAATTTTT-TTTTGTTTTCGCCAAAATA------------ATACAC--AAGTGAAAATCCGTAAGGCGA--------G----------------------AGACTGCA-----GTCAGA-
droBip1 scf7180000396641:470360-470727 - AGTGCGCGTGTGTGTGAG------TGCTGTAATTTCTAACCCCACCCCTCGCCTTGCCCCAGTAAACAGCACTTTCATATCGTATAGCCGAGAGTTGGAGCT----------GCTACAGGCAAAAAAAAA------GCTTAGTTCGGAAG-------------------------CCT----------AGTTAGGAGGAGTCTCCAC----GG--------------------GATCCAAAGTGAAACTGCCACAAGAAAAAAAAATTCAAAAAAAAAAAGAAAA----GAA----AATATAAA--AAACGACAGCTT------CGC--CCA--CTCACC---------------------------CTTTCTCACACTGAAAAT-C------------------------ACTC---------GCA--ACAACACGTTTAACGAG--TTTGTATTATTTTGTATAATTTT--TTTTGTTTTCGCCAAAATA------------ATACATTAAAGTGAAAATCCGTAAAGCGA--------G----------------------AGACTGCA-----GTCAGA-
dp5 XR_group8:8521203-8521520 + CGTGCGTGCATGTGAGTGTAGAAGTGTTGTAAGAGCA----ACTTC------------------------ACTTTCGTGTCGAATA-------CTT----TTCAAGGAGTACGAA-------GAAAATAA------TT---TTTT----------------TTT-GTTAAAATTTA---TT--TTTT------CGAA--------------TCGAACAAAGAAAATTGTGCCG---CAAAAGTAA---------------------------------------ATCGGGTC--ACCGGACAACGCAAAC------TCT-----GAC--ATA--CGCACT--------------------------------------------------TC------------------------------CATTT--ACAACAAGTTTAACAAG--TTT-------TTTTGCCAATCATTATT---TTTGTTGGTTATTTTTTGCCAAATTGAAAAAC--AAGTGAATAG--------CAAGAACTCGATCTCCAGGCCGTTTAAACCCTGTGCGGTGCA-----GTCAGA-
droPer2 scaffold_40:730138-730455 + CGTGCGTGCATGTGAGTGTAGAAGTGTTGTAAGAGCA----ACTTC------------------------ACTTTCGTGTCGAATA-------CTT----TTCAAGGAGTACGAA-------GAAAATAA------TT---TTTT----------------TTT-GTTAAAATTTA---TT--TTTT------CGAA--------------TCGAACAAAGAAAATTGTGCCG---CGAAAGTAA---------------------------------------ATCGGGTC--ACCGGACAACGCGAAC------TCT-----GAC--ATA--CGCACT--------------------------------------------------TC------------------------------CATTT--ACAACAAGTTTAACAAG--TTT-------TTTTGCCAATTATTATT---TTTGTTGGTTATTTTTTGCCAAATTGAAAAAC--AAGTGAATAG--------CAAGCACTCGATCTCCAGGCCGTTTAAACCCTGTGCGGTGCA-----GTCAGA-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--C--GAGTT---------------CGTT-------AGAAACAGCA----TT---GTTC----------------G-------------ACTT--TT--CT-A----ATAGTAGCCTA---GCCC----------------------GATTTCAAGTGA---------------------------------------AAAAGGAT--AC--------------------TCCAACACCA--TATA--CTCAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAACCATACAGCA--ACAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------AC................26129.0029000000812422010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGCA............27113.001300010003200061000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------AC................2716.00600000023010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAATA------------AGACAC--AAGTGAACAG--------C.....................................................2616.00600000014100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGTTAATA------------AGACAC--AAGTGA..................................................................2514.00400000000121000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGAGC.....2113.00300000000003000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACT...............2313.00300300000000000000
..............TGTG------TGCTGTAATTCCA----TCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--AAGTGAACAG--------CGA---------------------------------ACTGCA............2112.00200000010000100000
..........................................................................TCGATT-----C--C--GAGTT---------------CGTT-------AGAAACAGCA----T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------ACTGCAGGGGAGC.....1512.00200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAG--------CGA---------------------------------ACTGCAGGGG........2012.00200000000000002000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------AC................2512.00200000011000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGG..........2912.00200000001100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------AC................3012.00200000001100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA------------AGACAC--AAGTGAACA...............................................................2012.00200000000200000000
.............................................................................................................................AACAGCA----TT---GTTC----------------G-------------ACTT--TT--CT-A----ATA....................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTTAATA------------AGACAC--AAGTGAACAG--------C.....................................................2812.00200000001010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAATA------------AGACAC--AAGTGAACAG--------C.....................................................2712.00200000001000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAG--------CGA---------------------------------ACTGCAGGGG........2112.00200000001000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACAG--------CGA---------------------------------ACTGC.............1712.00200000002000000000
..............TGTG------TGCTGTAATTCCA----TCGCC------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
............................................................................................................................AAACAGCA----TT---GTTC----------------G-------------ACT......................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-2711.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGTTAATA------------AGACAC--AAGTGAACAG--------C.....................................................3011.00100000010000000000
......................................................................................................................................................................................................AGCCTA---GCCC----------------------GATTTCAAGTGA---------------------------------------AAAA........................................................................................................................................................................................................................................................................................................2611.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------AGACAC--AAGTGAACAG--------CGA---------------------------------..................2111.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CACTCAACCATACAGCA--ACA........................................................................................................................................................2011.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------..................2511.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACT...............2711.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACAG--------CGA---------------------------------ACTGCAGGGGAGCG....2611.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGC.............2511.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGGGGA.......2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------A.................2911.00100000000100000000
..............................................................................................TT---------------CGTT-------AGAAACAGCA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGA.......1911.00100000000000001000
.............GTGTG------TGCTGTAATTCCA----TC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA------------AGACAC--AAGTGAACAG--------......................................................2011.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGG.........1711.00100000000001000000
......CGTGTGTGTGTG------TGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1851.00500000500000000000
.............................................C------------------------ACTTTCGATT-----C--C--GAGTT---------------CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
..........................................................................................................................................................................................................TA---GCCC----------------------GATTTCAAGTGA---------------------------------------AAA.........................................................................................................................................................................................................................................................................................................2111.00100000001000000000
...............................................................................................................................................................................................................................................AAGTGA---------------------------------------AAAAGGAT--AC--------------------TCCA........................................................................................................................................................................................................................................................................2011.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGAGTAT...2311.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG--------CGA---------------------------------ACTGCAGGGGAGC.....2011.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AGACAC--AAGTGAACAG--------CGA---------------------------------A.................2111.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------..................3011.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--------CGA---------------------------------ACTGCAGGGGAGC.....1911.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGGG.........2511.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGG..........2811.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAATA------------AGACAC--AAGTGA..................................................................2211.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGC.............2711.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG--------CGA---------------------------------ACTGCAGGGGAG......2111.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACAG--------CGA---------------------------------ACTGCAGGGGAGCGA...2711.00100000000000010000
......CGTGTGTGTGTG------TGCTGTAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA------------AGACAC--AAGTGA..................................................................1711.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------AGACAC--AAGTGAACAG--------CGT---------------------------------..................2111.00100000000000001000
..........................................................................TCGATT-----C--C--GAGTT---------------CGTT-------AGAAACAGCA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGG.......1911.00100000000001000000
.....................................................................................C--C--GAGTT---------------CGTT-------AGAAACAGCA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
...............GTG------TGCTGTAATTCCA----TCGCC------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGAGCG....2211.00100001000000000000
...............GTG------TGCTGTAATTCCA----TCGCC------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGGTTAATA------------AGACAC--AAGTGAACA...............................................................2911.00100000010000000000
................................TTCCA----TCGCC------------------------ACTTTCGATT-----C--C--GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAATA------------AGACAC--AAGTGAACAG--------CGA---------------------------------..................2811.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAG--------CGA---------------------------------ACTGCAGGGGAGCGA...2511.00100000000000010000
..........................................CGCC------------------------ACTTTCGATT-----C--C--GAGTT---------------CGTT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................................GTT-------AGAAACAGCA----TT---GTTC----------------G-------------A........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..................................................................................................................................................................................................................................................TGA---------------------------------------AAAAGGAT--AC--------------------TCCAACACCA--TA..............................................................................................................................................................................................................................................................2511.00100000010000000000
................................TTCCA----TCGCC------------------------ACTTTCGATT-----C--C--GAGTT---------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGCA............2611.00100000001000000000
...........................................................................................GAGTT---------------CGTT-------AGAAACAGCA----TT---GTTC----------------G-------------ACT......................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
........................................................................................C--GAGTT---------------CGTT-------AGAAACAGCA----T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTGC.............2611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA------------AGACAC--AAGTGAACAG--------CG....................................................2111.00100000000000001000
..........TGTGTGTG------TGCTGTAATTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................TTACAAC------------------------------AC------------------------CCACTCAACCAT...................................................................................................................................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGGGG........2611.00100000001000000000
.......GTGTGTGTGTG------TGCTGTAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
......................................................................ACTTTCGATT-----C--C--GAGTT---------------CGTT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAG--------CGA---------------------------------ACTGCAGGG.........2011.00100000000000001000
............................................................................................................................................................................................................................................TTCAAGTGA---------------------------------------AAAAGGAT--AC--------------------TCCAAC......................................................................................................................................................................................................................................................................2511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------CGA---------------------------------ACTGCAGGGGAGCGAG..2111.00100000000000001000
................TG------TGCTGTAATTCCA----TCGCC------------------------ACTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------AGACAC--AAGTGAACAG--------CGA---------------------------------ACTG..............2511.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGAGCGA...2311.00100000000000010000
................................................................................................................................................C----------------G-------------ACTT--TT--CT-A----ATAGTAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
................................................................................................................................................................................................................................................AGTGA---------------------------------------AAAAGGAT--AC--------------------T...........................................................................................................................................................................................................................................................................1611.00100000001000000000
.........................................TCGCC------------------------ACTTTCGATT-----C--C--GAGTT---------------CGTT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................TCGATT-----C--C--GAGTT---------------CGTT-------AGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGGTTAATA------------AGACAC--AAGTGAAC................................................................2811.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAG--------CGA---------------------------------ACTGCAGGGGTTT.....2311.00100000000000001000
...........................................................................................................................................................................................................................................TTTCAAGTGA---------------------------------------AAAAGGAT--AC--------------------TCCAACACCA--................................................................................................................................................................................................................................................................3011.00100000010000000000
......................................................................ACTTTCGATT-----C--C--GAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTTAATA------------AGACAC--AAGTGAACAG--------......................................................2711.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCA--ACAACAAGTTTAACGAG--TT......................................................................................................................................2611.00100000001000000000
...........GTGTGTG------TGCTGTAATTCCA----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
........................................................................TTTCGATT-----C--C--GAGTT---------------CGTT-------TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000000001000
droSec2
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--C--GAGTT---------------CGTT-------AGGAACAGCA----TT---GTTC----------------A-------------ACTT--TT--CT-A-----AAGTAGCCTA---GCCC----------------------GATTTCAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCAACGCCA--TATA--CTCAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAACCATACAGCA--ACAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................TT---------------CGTT-------AGGAACAGCA----TT---GTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020101
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGAGC.....2112.0020020
..............................................................................................................................................................................................................................................CAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCA........................................................................................................................................................................................................................................................................2112.0021010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAGGGGA.......1911.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG--------CGA---------------------------------ACTGCAGGGGAGCGA...2411.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTTAGTTTTTTGGTT................................................................................................1911.0011000
...............................ATTCCA----TCGCC------------------------ACTTTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...........................................................................................................................................................................................................A---GCCC----------------------GATTTCAAGTGA---------------------------------------A...........................................................................................................................................................................................................................................................................................................1811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG--------CGA---------------------------------ACTGCAGGGGAGC.....2211.0010100
...................................................................................................................................................................................................................................................................................................T--AC--------------------TCCAACGCCA--TATA--CTCA......................................................................................................................................................................................................................................................2111.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTTAACGAG--TTT-------TT............................................................................................................................1811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-2611.0010010
................................................................................................................GTT-------AGGAACAGCA----TT---GTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........................................................................TTTCGATT-----C--C--GAGTT---------------CGTT-------AGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA------------ATACAC--AAGTGAACAG--------C.....................................................2111.0011000
..........................................................................................................................................................................................................TA---GCCC----------------------GATTTCAAGTGA---------------------------------------AAC.........................................................................................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGTGAACAG--------CGA---------------------------------ACTGCA............2011.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATA------------ATACAC--AAGTGAACAG--------CGA---------------------------------AC................2811.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---------------------------------ACTGCAGGGGAGCGAGA-2011.0010010
.................................................................................................................................................................................TT--TT--CT-A-----AAGTAGCCTA---GCCC----------------------...............................................................................................................................................................................................................................................................................................................................................................2111.0010001
........................................................................................................................................................................................................CCTA---GCCC----------------------GATTTCAAGT.....................................................................................................................................................................................................................................................................................................................................................1811.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------CGA---------------------------------ACTGCAGGGGAGCGA...2011.0010100
....CGCGTGTGTGTGTG------TGCTGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310100
dm3
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------CCTTTCGATT-----C--C--GAGTT---------------CGTT-------AGGAACAGCA----TT--AGTTC----------------G-------------CCTA--TT--TT-A----GTAGTAGCCTA---GTCC----------------------GATTTTAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCAACACCA--TATA--CTCAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAACCATACAGCA--ACAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAAGAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAG--------CGA---------------------------------ACTGCAGGGGAGC.....21142.00420000000000000000000000010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000200210000000000010000000000000000000000000000000000000000000000010000200201000000100325100000000000000000000000010000000000000000000000100000003000100001000010100000100000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-22131.003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001389000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--------CGA---------------------------------ACTGCAGGGGAGCGA...22128.002800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002620000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------CGA---------------------------------ACTGCAGGGGAGCGA...20122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007113000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTTCGATT-----C--C--GAGTT---------------CGTT-------AGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--------CGA---------------------------------ACTGCAGGGGAGCG....21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC--AAGTGAAGAG--------CGA---------------------------------ACTGC.............22111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007301000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CGATT-----C--C--GAGTT---------------CGTT-------AGGAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------CGA---------------------------------ACTGCAGGGGAGCGAG..2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000233000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--------CGA---------------------------------ACTGCAGGGGAGCGAG..2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAG--------CGA---------------------------------ACTGCAGGGG........2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-2417.0070000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAGAG--------CGA---------------------------------ACTGC.............1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--------CGA---------------------------------ACTGCAGGGGAGC.....2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------ATACAC--AAGTGAAGAG--------CGA---------------------------------..................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--AAGTGAAGAG--------CGA---------------------------------ACTGC.............2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AGCCTA---GTCC----------------------GATTTTAAGTGA---------------------------------------AAC.........................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAG--------CGA---------------------------------ACTGCAGGGGAG......2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000100000000000000000000000000010000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------CGA---------------------------------ACTGCAGGGGAGCG....1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000100000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAG--------CGA---------------------------------ACTGCAGGGGAG......2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000100000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................A----TCGCC------------------------CCTTTCGATT-----C--C--GAGTT---------------CGTT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAGAG--------CGA---------------------------------ACTGCAGG..........2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAATA------------ATACAC--AAGTGA..................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAG--------CGA---------------------------------ACTGCAGGGGAGCGA...2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAC--AAGTGAAGAG--------CGA---------------------------------ACTGCAGG..........2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--------CGA---------------------------------ACTGCAGGGGAG......1914.0040000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GTT---------------CGTT-------AGGAACAGCA----TT--AGTTC----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CGA---------------------------------ACTGCAGGGGAGCG....1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAG--------CGA---------------------------------ACTGCAGGG.........2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CGA---------------------------------ACTGCAGGGGAGCGAGA-2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAC--AAGTGAAGAG--------CGA---------------------------------AC................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAG--------CGA---------------------------------ACTGCAGGGGAGCG....2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TGTGTG------TGCTGTAATTCCA----TC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAC--AAGTGAAGAG--------CGA---------------------------------A.................2014.0040000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000
...............................................................................T-----C--C--GAGTT---------------CGTT-------AGGAACAGCA----TT--AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................CGTT-------AGGAACAGCA----TT--AGTTC----------------G-------------CCTA--...................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................C--C--GAGTT---------------CGTT-------AGGAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------ACTGCAGGGGAGCGAGA-1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000
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................................................................................................................................................................................................................................................................................................................................................CAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAA.......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAG--------CGA---------------------------------ACTGCAGGGGAGCGAGA-2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AATTAGTTACAAC------------------------------AC------------------------CCACTCA........................................................................................................................................................................2211.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAATA------------ATACAC--AAGTGAAGAG--------CG....................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGTGAAGAG--------CGA---------------------------------ACTGCAGG..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTTAATA------------ATACAC--AAGT....................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGAG--------CGA---------------------------------ACTGCAGG..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAATA------------ATACAC--AAGTG...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCAATAATTAGTTACAAC------------------------------AC------------------------CCACTCAA.......................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--AAGTGAAGAG--------CGA---------------------------------ACTGCA............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................ACAGGAT--AC--------------------TCCAACACCA--TATA--CT........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AGGAT--AC--------------------TCCAACACCA--TATA--CTC.......................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGTGAAGAG--------CGA---------------------------------ACTGC.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAC--AAGTGAAGAG--------CGA---------------------------------ACTGCAG...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACCATACAGCA--ACAACAAGTT.................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAGAG--------CGA---------------------------------ACTGCAG...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------ATACAC--AAGTGAAGAG--------CG....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................TGTAATTCCA----TCGCC------------------------CCTTTCGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG--------CGA---------------------------------ACTGCAGGGGA.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACGAG--TTT-------TTTGTATTATC...................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TAGCCTA---GTCC----------------------GATTTTAAGTGA---------------------------------------AA..........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------ATACAC--AAGTGAAGAG--------CGA---------------------------------ACTGCAG...........2811.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GTTACAAC------------------------------AC------------------------CCACTCAACCATACA................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CC------------------------CCTTTCGATT-----C--C--GAGTT---------------CGTT-------AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTTGGTTAATA------------ATACAC--A.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTACAAC------------------------------AC------------------------CCACTCAACCATAC.................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................T---------------CGTT-------AGGAACAGCA----TT--AGTTT----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATA------------ATACAC--AAGTGAAGAG--------CG....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG--------CGA---------------------------------ACTGCAGGGGAG......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGTGAAGAG--------CGA---------------------------------ACTGCAGGGGA.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAGAG--------CGA---------------------------------ACTGCAGGGGAG......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTTGATT-----C--G--GAGTT---------------CCTT-------AGGAACAGCACTATTA---GTTC----------------G-------------CATT--TT--CT-A----CCAGTAGCCTA---GTCC----------------------CTTTTCAAGTGA---------------------------------------AATAGGAT--AC--------------------TCAAACACCA--CATA--CTCAATAAATAGTTACAAC------------------------------AC------------------------CCACTCAACCAC--------ACATCAAGTTTAACGAG--TTT-------TTTGTATCATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAACAG--------CGA---------------------------------ACTGCAAGGGAGCGAGA-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG--------CGA---------------------------------ACTGCAAGGGAGC.....2213.0032100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------CGA---------------------------------ACTGCAAGGGAG......2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................................TACAAC------------------------------AC------------------------CCACTCAACCAC--------...........................................................................................................................................................2011.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG--------CGA---------------------------------ACTGCAAGGGAGCGA...2411.0010001000
...............................................................................................................CCTT-------AGGAACAGCACTATTA---GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG--------CGA---------------------------------ACTGCAAGGGAGC.....2011.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAC--------ACATCAAGTTTAACGA...........................................................................................................................................2111.0010100000
.......................................................................................................................................TTA---GTTC----------------G-------------CATT--TT--CT-A----CCAGTAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAACAG--------CGA---------------------------------ACTGCAAGGGAGC.....2611.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGTGAACAG--------CGA---------------------------------ACTGCAAGGGA.......2511.0010000100
.................................................................................................................................................................................................................................................................................................GAT--AC--------------------TCAAACACCA--CATA--CTCAAT....................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAG--------CGA---------------------------------ACTGCAAGGGAG......2311.0010000100
..................................................................................................................................................................................T--TT--CT-A----CCAGTAGCCTA---GTCC----------------------CTT............................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.............................................................................................................................................GTTC----------------G-------------CATT--TT--CT-A----CCAGTAGCCTA---.........................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................................................CTATTA---GTTC----------------G-------------CATT--TT--CT-A----CCAGT..................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.....................................................................................................................................TATTA---GTTC----------------G-------------CATT--TT--CT-A----CCAGTAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
...................................................................................................................................................................................................................................................GA---------------------------------------AATAGGAT--AC--------------------TCAAACACCA--CAT.............................................................................................................................................................................................................................................................2511.0010100000
........................................................................................................................................TA---GTTC----------------G-------------CATT--TT--CT-A----CCAGTAGCC..............................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...............................................................................................................CCTT-------AGGAACAGCACTATTA---G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
............................GTAATTCCA----TCGCC------------------------ACTTTTGATT-----C--G--GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
droYak3
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--G--GAGTT---------------CGTT-------AGGAACAGCA----TT--AGTTC----------------G-------------CATT--TT--TT-A----CCAGTAGCCTA---GTCC----------------------CTATTTAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCAACTTCA--CATA--CTCAATAAATAGTTACAAC------------------------------AC------------------------CCACTCAACCACACAACA--ACAACAAGTTTAACGAG--TTT-------TTTGTATCATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAGCAA--------CGA---------------------------------ACTGCAGGGAAGCGAGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................TTCCA----TCGCC------------------------ACTTTCGATT-----C--G--GAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.00600000000006
.............................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------AC------------------------CCACTCAACCACACA................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA--------CGA---------------------------------ACTGCAGGGAAGCGA...2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAC--AAGTGAGCAA--------CGA---------------------------------ACTGCAGGGA........2811.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CACTCAACCACACAACA--ACA........................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................A----CCAGTAGCCTA---GTCC----------------------CTATTTAAGTG....................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC--AAGTGAGCAA--------CGA---------------------------------ACTGCA............2311.00101000000000
...................................................................................................................................................................................................................................................GA---------------------------------------AACAGGAT--AC--------------------TCCAACTT....................................................................................................................................................................................................................................................................2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------ACTGCAGGGAAGCGAGA.1911.00100000010000
............................................................................................................................................................................................................................................TTTAAGTGA---------------------------------------AACAGGAT--AC--------------------TCCAACTTC...................................................................................................................................................................................................................................................................2811.00100000010000
................................................................................................................................................................................................................................................................................................................................................CAATAAATAGTTACAAC------------------------------AC------------------------CCACTCAAC......................................................................................................................................................................2811.00101000000000
..............................................................................TT-----C--G--GAGTT---------------CGTT-------AGGAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAA--------CGA---------------------------------ACTGCAGG..........1911.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................AATAGTTACAAC------------------------------AC------------------------CCACTCAACCACAC.................................................................................................................................................................2811.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TTTGTATCATCATTACTTAGTTTT......................................................................................................2511.00101000000000
......................................................................................................................................................................................T--TT-A----CCAGTAGCCTA---GTCC----------------------CTATTTAAG......................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA------------ATACAC--AAGTGAGCAA--------C.....................................................2211.00100000010000
...........GTGTGTG------TGCTGTAATTCCA----TC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCT------------------------ACTTTCGATT-----C--G--GAGTT---------------ACCT-------AGGAACAT------TT---GTTC----------------G-------------TTTT--TT--T-------CTAGTAGT--------TC----------------------GCTTAAAAGTGA---------------------------------------AACAGGAT--AC--------------------TCC---TCCA--CATA--CTCAATA------TACAATACTATACTCACACCCT-----------------------------------------TACTC--------AGTAA-CCAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAAAAG--------CGA---------------------------------ACTGCAGGGAA--GAGA-SizeHit CountTotal NormTotal
No Reads
droBia1
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--G--GAGTT---------------TGCT-------AGGAACAT------TT---GTTC----------------G-------------ACTT--TT--TT------CTAGTAGCCCC---GCCC-------------------------CCAAAGGGA---------------------------------------ATCAGGACATAC--------------------TC------CAC--ATACAC-----------TTACA---------------------------------C------CCCGAA---------CAACCAGTCAA--------TA--CCAACAAGTTTAACGAG--TTT--------TTGTATTATCATTACTTAGTTATTTGGTTAATA------------AA--AC--AAGTGAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-SizeHit CountTotal NormTotal
No Reads
droTak1
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTTTCGATT-----C--G--GAGTT---------------CGCT-------AGGAACAT------TT---GTTC----------------G-------------CCTT--TT--TT----TACCAGTAGCGTA---GA-----------------------------GTAGTGA---------------------------------------AGCAGGATAAAC--------------------TC------CACATATA--CTCAATATATACTTACA---------------------------------C------CCCCAAACAACCAACCAACCACTCAA--------TAATCCAACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTATTTGGTTAATA------------AAACAC--AAGTGAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-SizeHit CountTotal NormTotal
No Reads
droEle1
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGTC------------------------ACTTTCGATT-----C--G--GAGTT---------------CGCT-------AGGGACAG------TT---GTTC----------------T-------------T-----TT--TTTACTTACCAGTAGTC------------------------------C---CCAAAGTGA---------------------------------------AACAGGAT--AC--------------------TT------CAC--ATA--CTCACAA-----------TAC-------------TA----------AACAC-C----------------------CCACTCAA--------CA----TACAAGTTTAACGAG--ATT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGGAAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-SizeHit CountTotal NormTotal
No Reads
droRho1
CGTGCGCGTGTGTGTGTG------TGCTGTAAATCCA----TCGCC------------------------ACTTTCGATT-----T--G--GAGTT---------------CGCT-------AGGAACAG------TT---GTTC----------------T-------------TTTT--TT--TT-ACTTACCAGTAGCC------------------------------C---CCAAAGTGA---------------------------------------AACAGGAT--AC--------------------TC------CAC--ATA--CTCACTA-----------CAC-------------TA----------AACAC-C----------------------CCACTCAA--------TA----TACAAGTTTAACGAG--TTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGGGAAAAG--------CGA---------------------------------ACTGCAGGGA----AGA-SizeHit CountTotal NormTotal
No Reads
droFic1
CGTGCGCGTGTGTGTGTG------TGCTGTAATTCCA----TCGCC------------------------ACTCTCGATT-----C--G--GAGTT---------------TGCT-------AGGAACAG------TT---GTTC----------------G-------------CTTT--TT--TTTAGCTACTAGTAGCA------------------------------C---CCAAAGTGA---------------------------------------AACAGGAT--AC--------------------TC------TAC--ATA--CTCACAACATACTTTC-CC------------------------------AC------------------------CCACTCAA--------TAA---TACAAGTTTAACGAGATTTT-------TTTGTATTATCATTACTTAGTTTTTTGGTTAATA------------ATACAC--AAGTGAAAAGCAG-----TGG---------------------------------ATTGCA-----GTCAGA-SizeHit CountTotal NormTotal
No Reads
droKik1
CGTGTGTGTGTGTGTGTG------TGCTGTT-TTTCA----TTGCT------------------------ACTTTCGATT-----C--G--GAGTT---------------CGTC-------AGGAACAG------TT---GTTT----------------TAACCCTATAAATGTATT--TT--T-------CTAG---TCCA---ACCC----------------------G-TCTAAAGTAA--------------------------------------------------------------------------------------------------TAGTT-TAAC------------------------------AC------------------------TCACCCA--------------TAACTAGT-TAACG----TTT-------TTAATA--------------TTTTTTGGTTAATAATACCC-----------G--AAGTGAAGAG--------------------------------------------ACTGCA-----GTGAGA-SizeHit CountTotal NormTotal
No Reads
droAna3
CGTGCGCGTGTGTGTGAG------TGCTGTAATTTCT----CCCCCCCTCGCT-------CGTACACAGCACTTTCATATCGTATC--G--GAGTTGGAGTTGAAAAA--AAAAA-------AAAAAAAA------GCTCAGTTCGGAAACAGTTAGGATCC-------------TTCT--TTT-TT----TCCCAAA-------------GGAA-----------------A---CCAAAGTGAAACTGCCATAAGAAAA----------------------AA----GAA----AATACAACAGAAACAACAGCTC------CGC--TCA--CTCACCC-------------------------CCTTTCTCA--CTCAAATCTCACTCC------------------------CCC------AA--ACAACAAGTTTAACGAG--TTTGTATTATTTTGTATAATTTTT-TTTTGTTTTCGCCAAAATA------------ATACAC--AAGTGAAAATCCGTAAGGCGA--------G----------------------AGACTGCA-----GTCAGA-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................AAAA------GCTCAGTTCGGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002010001
CGTGCGCGTGTGTGTGAG------TGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCGTAAGGCGA--------G----------------------AGACTGC.............2311.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................TCC------------------------CCC------AA--ACAACAAGTTTAACGAG--C.......................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCGTAAGGCGA--------G----------------------AGACTGC.............2411.001000010
...................................CT----CCCCCCCTCGCT-------CGTACACAGCACTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................CATATCGTATC--G--GAGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAGGCGA--------G----------------------AGACTGCA-----GT.....2111.001001000
..TGCGCGTGTGTGTGAG------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201000100
droBip1
AGTGCGCGTGTGTGTGAG------TGCTGTAATTTCTAACCCCACCCCTCGCCTTGCCCCAGTAAACAGCACTTTCATATCGTATAGCCGAGAGTTGGAGCT----------GCTACAGGCAAAAAAAAA------GCTTAGTTCGGAAG-------------------------CCT----------AGTTAGGAGGAGTCTCCAC----GG--------------------GATCCAAAGTGAAACTGCCACAAGAAAAAAAAATTCAAAAAAAAAAAGAAAA----GAA----AATATAAA--AAACGACAGCTT------CGC--CCA--CTCACC---------------------------CTTTCTCACACTGAAAAT-C------------------------ACTC---------GCA--ACAACACGTTTAACGAG--TTTGTATTATTTTGTATAATTTT--TTTTGTTTTCGCCAAAATA------------ATACATTAAAGTGAAAATCCGTAAAGCGA--------G----------------------AGACTGCA-----GTCAGA-SizeHit CountTotal NormTotal
No Reads
dp5
CGTGCGTGCATGTGAGTGTAGAAGTGTTGTAAGAGCA----ACTTC------------------------ACTTTCGTGTCGAATA-------CTT----TTCAAGGAGTACGAA-------GAAAATAA------TT---TTTT----------------TTT-GTTAAAATTTA---TT--TTTT------CGAA--------------TCGAACAAAGAAAATTGTGCCG---CAAAAGTAA---------------------------------------ATCGGGTC--ACCGGACAACGCAAAC------TCT-----GAC--ATA--CGCACT--------------------------------------------------TC------------------------------CATTT--ACAACAAGTTTAACAAG--TTT-------TTTTGCCAATCATTATT---TTTGTTGGTTATTTTTTGCCAAATTGAAAAAC--AAGTGAATAG--------CAAGAACTCGATCTCCAGGCCGTTTAAACCCTGTGCGGTGCA-----GTCAGA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........GTGAGTGTAGAAGTGTTGTAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000300
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATAG--------CAAGAACTCGATCTCCAGGC..................................2712.0020000000020
...................................................................................................................................................................................................................................................................................................C--ACCGGACAACGCAAAC------TCT-----GGT--...............................................................................................................................................................................................................................................................2312.0020000000200
................................................................................................................................................................................................................................................AGTAA---------------------------------------ATCGGGTC--ACCGGACA..........................................................................................................................................................................................................................................................................................2112.0020200000000
...................................................................................................................................................................................................................................................................................................C--ACCGGACAACGCAAAC------TCT-----GAC--A..............................................................................................................................................................................................................................................................2411.0010100000000
............TGAGTGTAGAAGTGTTGTAAGAGCA----AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000010
........................................................................................................................................................................................TTT------CGAA--------------TCGAACAAAGAAAA.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
....................GAAGTGTTGTAAGAGCA----ACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCTGTGCGGTGCA-----GTCA...2111.0010100000000
CGTGCGTGCATGTGAGTGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAACCCTGTGCGGTGCA-----GTC....2211.0010100000000
...................................................................................................................................................................................................................................................................................................C--ACCGGACAACGCAAAC------TCT-----GAC--...............................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................CAACGCAAAC------TCT-----GAC--ATA--C.........................................................................................................................................................................................................................................................2011.0010100000000
.......GCATGTGAGTGTAGAAGTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................CT-----GAC--ATA--CGCACT--------------------------------------------------TC------------------------------CATTT--...........................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGTGCGGTGCA-----GTCA...2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTGCGGTGCA-----GTCA...1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCAAATTGAAAAAC--AAGT....................................................................2111.0010100000000
................................................................................................................................................................................................................................ATTGTGCCG---CAAAAGTAA---------------------------------------ATCGGGT.....................................................................................................................................................................................................................................................................................................2511.0010000001000
..........TGTGAGTGTAGAAGTGTTGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
............................................................................................................................................................................TTTA---TT--TTTT------CGAA--------------TCGAACA..............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
CGTGCGTGCATGTGAGTGTAGAAGTGTTGTAAGAGCA----ACTTC------------------------ACTTTCGTGTCGAATA-------CTT----TTCAAGGAGTACGAA-------GAAAATAA------TT---TTTT----------------TTT-GTTAAAATTTA---TT--TTTT------CGAA--------------TCGAACAAAGAAAATTGTGCCG---CGAAAGTAA---------------------------------------ATCGGGTC--ACCGGACAACGCGAAC------TCT-----GAC--ATA--CGCACT--------------------------------------------------TC------------------------------CATTT--ACAACAAGTTTAACAAG--TTT-------TTTTGCCAATTATTATT---TTTGTTGGTTATTTTTTGCCAAATTGAAAAAC--AAGTGAATAG--------CAAGCACTCGATCTCCAGGCCGTTTAAACCCTGTGCGGTGCA-----GTCAGA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................C--ACCGGACAACGCGAAC------TCT-----GA..................................................................................................................................................................................................................................................................2213.003300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATAG--------CAAGCACTCGATCTCC......................................2313.003300000
...................................................................................................................................................................................................................................................................................................C--ACCGGACAACGCGAAC------TCT-----GAC--...............................................................................................................................................................................................................................................................2312.002200000
............................................................................................................................................................................................................................................................................................................CAACGCGAAC------TCT-----GAC--ATA--CGC.......................................................................................................................................................................................................................................................2212.002200000
..................................................................................................................................................................................................................................................................................................................GAAC------TCT-----GAC--ATA--CGCACT--------------------------------------------------..................................................................................................................................................................................................1912.002200000
......TGCATGTGAGTGTAGAAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.................GTAGAAGTGTTGTAAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................TCT-----GAC--ATA--CGCACT--------------------------------------------------TC------------------------------CATTT--ACAA.......................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACTCGATCTCCAGGCC.................................2011.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCGATCTCCAGGCCGTTT.............................2111.001010000
....................................................................................................................................................................................................................................................A---------------------------------------ATCGGGTC--ACCGGACAAC........................................................................................................................................................................................................................................................................................1911.001100000
..................................GCA----ACTTC------------------------ACTTTCGTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............................................................................................................................................................................................................................................................................................................CGCGAAC------TCT-----GAC--ATA--CGC.......................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAG--------CAAGCACTCGATCTCCAGGC..................................2611.001100000
............................GTAAGAGCA----ACTTC------------------------ACTTTCGTGTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCCTGTGCGGTGCA-----GTCA...2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAACCCTGTGCGGTGCA-----GTC....2211.001010000
...............................................................................................T----TTCAAGGAGTACGAA-------GAAAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................................................AAGTAA---------------------------------------ATCGGGTC--ACCGGACAACGC......................................................................................................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................................................................CG---CGAAAGTAA---------------------------------------ATCGGGTC--A.................................................................................................................................................................................................................................................................................................2011.001010000
........................................................................................................................................................................................................................................................................................................CGGACAACGCGAAC------TCT-----GAC--ATA--CGC.......................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTCGATCTCCAGGC..................................1811.001100000

Generated: 05/18/2015 at 02:34 PM