ID:

dsi_12267

 Coordinate:

2r:10679951-10680241 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.3 -27.8 -27.6 -27.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTAAAGCCCAGTGTGTGGACTCAAGAACCTACACAGAGAAAAAATCATGCGAATTATGCCAATGAAAAGACTTAAGAGGGCAAGCAAAGAAATTTTCTCTGTGTATATTCTGGGACCTAAAACTTTTTGAATTTTGTTAACAACTTAGTAGTTGATAGCCTTTAAGTTGGTACTTTTGTGCTGCTGTAGTTATGCTTGTAGTTCAGTCTAGTACTTAAGTTAGTTTCTGATTTAATAACTTGGTTTGGCATATGGAACTATGGTTGTTTAATCCAATTCGAATTTCCATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
**************************************************************************************************************************************************************...........................((....((((.(((.((((((((...((((.((((((((.(((.(((((.(((....)))..))))).)))...)))))).)).))))...)))..))))).))).))))..))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGGCCGAAATCATTGAGAAC.. 27 0 1 2.00 2 2 0 0 0 0 0 0
.....GCCCAGCGCGCCGTCCAGAA.............................................................................................................................................................................................................................................................................................................................................................................. 20 2 1 2.00 2 2 0 0 0 0 0 0
...................CCAGAACTTTGCCAATCAAA................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 2.00 2 0 0 2 0 0 0 0
..............................................................................................................................................................TCTGGGACCTAAAACTTTTTGAATT................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGAAATCATTGAGA.... 20 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................AAAAATCGTGCGAATTAGGTC......................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TAGTTTCTGATTTAATAACTTGGTTTGGC............................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................TAGTAGGTGATAGCCCT................................................................................................................................................................................... 17 2 2 0.50 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................CATAGTAGGTGATAGCCTTG.................................................................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................CGGTATTTATGCTTGTAGT........................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................CTACTGTAGTTAAGCTGGTA............................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................TTTAATAACTTGGTT................................................................................................ 15 0 4 0.25 1 0 0 0 1 0 0 0
.............................................ACAAGGAAAAGCCCAGCGTG...................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.20 2 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TATTGCGTAAGTTAGTTTCTGATT............................................................................................................. 24 3 5 0.20 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................................................GTTCGAATCTCCATAGG................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................TTTAAAAAGTTGGTTTGG............................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

CGCCGCGGGTCGCGCCGCGGGTCTTGAAACGGTTAGTTTGAGGGATGGTCCATTTCGGGTCACACACCTGAGTTCTTGGATGTGTCTCTTTTTTAGTACGCTTAATACGGTTACTTTTCTGAATTCTCCCGTTCGTTTCTTTAAAAGAGACACATATAAGACCCTGGATTTTGAAAAACTTAAAACAATTGTTGAATCATCAACTATCGGAAATTCAACCATGAAAACACGACGACATCAATACGAACATCAAGTCAGATCATGAATTCAATCAAAGACTAAATTATTGAACCAAACCGTATACCTTGATACCAACAAATTAGGTTAAGCTTAAAGGTATCCACCGACAATATCGGCCGTTGAACCTCGACCGGCTTTAGTAACTCTTGAT
********************************************************************************************...........................((....((((.(((.((((((((...((((.((((((((.(((.(((((.(((....)))..))))).)))...)))))).)).))))...)))..))))).))).))))..))************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 O002
Head
 M024
male body		 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..............................GGTTAGTTTGAGGGATGG....................................................................................................................................................................................................................................................................................................................................................... 18 0 1 6.00 6 6 0 0 0 0 0 0 0 0
.............................AGCTTAGTTTGAGGGATGG....................................................................................................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................GGTTAGTTTGAGGGATGGAC..................................................................................................................................................................................................................................................................................................................................................... 20 1 4 0.50 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................TCGACAGGCCTTAGTAAGTCT.... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................TCGACAGGCCTTAGTAAGTC..... 20 3 7 0.29 2 0 0 0 1 0 1 0 0 0
...............................GTCAGTTTGAGGGATGGT...................................................................................................................................................................................................................................................................................................................................................... 18 1 4 0.25 1 0 1 0 0 0 0 0 0 0
.................................CAGTTTGACGGATGGTCC.................................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0
.................................TAGTTTGAGGGATGGACC.................................................................................................................................................................................................................................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0
................................TTAGTTTGAGGGATGGAC..................................................................................................................................................................................................................................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0
.............................GGGTTAGTTTGAGGGATGG....................................................................................................................................................................................................................................................................................................................................................... 19 1 4 0.25 1 0 0 0 0 1 0 0 0 0
.............................GGGTTAGTTTGAGGGATG........................................................................................................................................................................................................................................................................................................................................................ 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................GTTAGTTTGAGGGATGGA...................................................................................................................................................................................................................................................................................................................................................... 18 1 5 0.20 1 0 0 1 0 0 0 0 0 0
.................................TCGTTTGAGGGATGG....................................................................................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAAAACAGGACGAGATCAATA.................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 1 0 0
..................................AGTTTGACGGATGGTAC.................................................................................................................................................................................................................................................................................................................................................... 17 2 18 0.11 2 0 1 1 0 0 0 0 0 0
.......................................................................GTGGTTGGATGTGTCTCT.............................................................................................................................................................................................................................................................................................................. 18 2 20 0.10 2 0 2 0 0 0 0 0 0 0
......................................TGAGGGATGGTCAGTT................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.10 2 0 2 0 0 0 0 0 0 0
...................................................................................................................................TTCGTTTCTTTAAGAG.................................................................................................................................................................................................................................................... 16 1 11 0.09 1 0 1 0 0 0 0 0 0 0
...............................TCTAGTTTGAGGGATGG....................................................................................................................................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0
....GGGGGTCGCGCCGCGGC.................................................................................................................................................................................................................................................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0
..................................AGTTTGAGGGGTGGTGC.................................................................................................................................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 1
..................................AGTTTGACGGATGGT...................................................................................................................................................................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 1 0 0 0 0 0 0
................................TCAGTTTGAGGGATGGTTG.................................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0
..........................................................................................................ACGGTTTCTTTGCTGATTTC......................................................................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................AAGCCACAGCATGAATTCA......................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0
.............................GGGTTAGTTTGACGGAT......................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................GACTCAGATACGACCCTG................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................TTGAGGGTTGGGCCATTC................................................................................................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10679901-10680291 - dsi_12267 GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTGTGGACTCAAGAACCTA------------CA-------CAGAGAAAAA----------------------------ATCATGCGAATTA------------TGCCAATGAAAAGACTTAAGA-------------------GGGCA----------------AGCAAAG--AAATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CTAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGCCTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACTTAAGT----------------TAGT-TTC-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGCATATGGAACTATGGTTGTTT---AATCC--AATT--CGAATTTC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
droSec2 scaffold_1:7480716-7481121 - GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTGTGGACTCAAGAACCTA------------CA-------CAGAGAAAAA----------------------------ATCATGCAAATTACTTTTACCCGTATGCCAATTAAAAGACTTAAGA----------------GGAGGGCA----------------AGCAAAG--AAATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CTAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGCATTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTTAGTC-----TAGTACTTAAGT----------------TAGT-TTC-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGTATATGGAACTATGGTTGTTT---AATCC--AATT--CAATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
dm3 chr2R:9956367-9956771 - GCGGCGCACAGCGCGGCGCACAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTCTGGACTCAAGAACCTA------------CA-------CAGAGAAAA--------------------------AAAATCATGCGAATTACTTTTACCCGTTTGCCAATGAAAAGATTTAAAA-------------------CCGCA----------------TGCAACG--ATATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CTAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGCCTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACTTAAGC----------------TAGT-TTT-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGTATATGGAACTATGGTTTTTT---AATCC--AATT--CGATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
droEre2 scaffold_4845:15864891-15865312 + GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT--CC----AGACCCCGGTCTGGACTCCAGAACCTA------------CA-------CAGAGCAAAT-------------------GGAAAATGGATCATGCGAATTACTTGTACTCTTATGCCGATGAAAAGAGGTTGGA-------------------GCGCA----------------TGCAAAG--TTATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CGAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGTCCTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACCTAAGT----------------TAGT-TTT-----------CGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGCTTATGGAACTATGGTTTTTT---AATCC--ACTT--CGATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
droYak3 2R:9905242-9905649 - GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTCTGGACTCAAGAACCTA------------CA-------CAGAGAAAA--------------------------TCGATCGTGCGATTTAATGATAACCATAT--------------ATAACCATATATACTAATAACAGGAT-GCA----------------TGCAAAG--TCATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CAAA-------AACTT--TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGACTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTAGCTAAGT----------------TAGT-TTT-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGCTCATGGAACTATGGTTTTTT---AATCC--ACTT--CGATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
droEug1 scf7180000409462:2876943-2877202 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--TCTCC--GTGTAACCTCTAGACC-----------------------CAAC-----CAAACTTT-TTGAATTT------TGTT-G--ATAACTT--GTAGT-TTGTAGTCTCTAAGTTTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTT-----TAGTACCTAAGT----------------TAGT-TTT-----------TGATTTAATAAC--TTTG-GT---------------------------------------------------------T----ACTGGTTCATGGTCTAACGGTTCTTT---AATCC--AATG--CTATTTTCTACAACATTAGGTGGCTGTCATAGCCGGCAACCTGGAGCTGGCTGAAATCATTGAGAACTA
droBia1 scf7180000301592:113057-113349 - A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTAAAC-------------------CTGCAATTAAAGAAACATACACACCGTCTATTTTTT--TCTCT--GTGTAAACTCTGGGCC-----------------------CTAA-------A----T-TTGAAATT------TGTTTA--ATAACTC--GTAGT-TTGTAGTCTCTAAG-ATGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACCTAAGA----------------TAGT-TTT----------GTGATTTAATAACAGCT-C-GT---------------------------------------------------------------TTGGTTCGTGGAATTTCGGTTTTCT---AACAC--AACA--TTGTTTCC------CATAGGTGGCTGTCATTGCCGGCAACCTGGAGCTGGCCGAAATCATTGAGAACTA
droTak1 scf7180000415376:180789-181055 - AAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG--ATATTT--TCTCT--GTGTAAACTCTGGACC-----------------------CTTA-------AACTTT-TTGAAATTTAGATTTGTT-GAGATAACTC--GTAGT-TTGTAGTCTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGAGCCTAAGT----------------TAGT-TTT-----------GGAATTAATAAC--TT-TCTT---------------------------------------------------------------TTGGTTTTTGGAATTACAGTC-TCT---AACCC--AATG--CTATCTCC------CTTAGGTGGCCGTCATAGCCGGCAACTTGGAGCTAGCCGAAATCATTGAGAACTA
droEle1 scf7180000491201:12669-12919 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA--TCTCT--GTGTACACTCTGGATC-----------------------CAAAA----AAAACTTA-CTGAATTT------TGTT-G--ATAACTT--GTAGT-TTGTAGTCTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTTAATAAGT----------------TAGTGTTT-----------TGAGTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGTCTTTGGAATACCGGTT-TTT---AATGC--AATG--CTGTTTCC------CTTAGGTGGCTGTCATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
droRho1 scf7180000777200:284111-284364 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--ATATTT--TCTCT--GTGTATTCTCTGGAAC-----------------------CAAA-------AACTTA-CTGAATTT------TGTT-G--ATAACTT--GTAGT-GTGTAGTCTGTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTT-----TAGTAACTAAGT----------------TAGT-TTT-----------TGATTTATTAAC--TT-G-GT---------------------------------------------------------------TTGGTTCTTGGAATTCCGGTTTTTT---AATCC--AATG--CTATTTCC------CATAGGTGGCTGTCATTGCCGGCAACTTGGAGCTGGCTGAAATCATTGAAAACTA
droFic1 scf7180000453948:453410-453685 + AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATACATAACA-------------------A--GA----------------AACAAGA--TTTTTT--TCTCT--GTGCATACTCTGAACC-----------------------GT---------AACTTT-TTGAATTT------AGTT-G--AAAACTT--GTAGT-TTGTTATACCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ACGCT-TGTAGTTCAGTC-----TAGTGACTAAGT----------------TAGT-CTT-----------TGACTTAATAAC--TTTG-AT---------------------------------------------------------------CTGGTTGCTGGAACTGCAGATTGTT---AACCC--AAAT--CCGTTTCT------CTCAGGTGGCTGTCATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTA
droKik1 scf7180000302385:83299-83711 - GCGGCGCCCAGCGTGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGACCAGTGTC--------TCTCTGTCGGGAGTCTAGAAGTTA-----------GTA-------CAGGGCAGGAA----------------ATGTAAGATGG---------------------------CTAATAAAATTAATTAAAA-------------------T--CAATCTTAG-------------AAC--ATATTCCCTCTCT--GTGCAAACTCTGGACT-----------------------CTTG-------AAAGTA-ATGAATTT----TTCGTT-G--TTAACTC--GTAGTTTTGTAGTCTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-GTGCTGCTGCCGCTGTAGTT-ACGCTTTGTAGTTCAGTT----ACAGTGATTAAGT---------------TTAGT-TTTTGT--------TGAGTTAATAAC--TT-G-AT---------------------------------------------------------T----TTTGGTT---------CCGGTTATTT---AATAC--GTTTTGTGATTCCCCCC--CTCTAGGTGGCTGTCATAGCCGGCAACTTGGAACTGGCGGAGATAATTGAGAACTA
droAna3 scaffold_13266:5942786-5943184 + GGGGCGCCCAGCGAGGTGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCTAA-TGCCC----AGATCTCTA---------TAGATGCTAGATATTATGGATTATGGGAG------A-AGAATATGGA-----------------GTAG---------------------------ACAGTATAAT-AACAAATA----------------------TAATCTCA----------AG-TACC--ATATTCTCTTCCA--TTTTAATATCTAGTTT-----------------------CTAA-------TAATTA-AT-----A------TCTTTA--GTATCTTTATTAGTTTTGTTATTTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ACGCT-TGTAGTTGAGAC-----TAGTTCTTAAGT----------------TAGT-TTT----------GAGTTCTAATGATGACT-C------------------------------------------------------------T----ATCGGTT---------CTGGTCCTTTTATTAAAT--ACTA--TTATTCCA------TCTAGGTGGCTGTCATCGCCGGCAACTTGGAGCTAGCCGAGATAATTGAGAACTA
droBip1 scf7180000395839:101304-101723 + GCGGCGCCCAGCGAGGTGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCTAA-TGCCCTATGAG-T----GTCTA----TGAGAGGCTAGATATT---------GGGAGATTGGGATGGAATATGGAAATAGTTATCATGCAAGAAAG---------------------------ATA-----------------------------------------TTAAATAAATCTAAATCCTACC--ATATTC--TCTCTTAACCTAATATCTAGTTT-----------------------CCAAGAAATAAAACTTTAT----TTT--AATTCAAA-G--ATTACTA--GTAGT-TTGTAATTTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGCC-----TAGTTCTTAAGT----------------TAGT-TTT----------GCCTTCTAATGAC--TT-G-TA---------------------------------------------------------T----TTTGGTT-CTGGATC--------TTATATTAAAT--ATTG--TTATTCTA------TCTAGGTGGCTGTCATCGCCGGCAACTTAGAGCTAGCCGAGATAATTGAGAACTA
dp5 3:2667723-2667932 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGA-ATGGAAT------------------------------------------------------------------------------------------------------------TATG-C------TGCTACTGTAGTT-ACGCT-TGTAGTCTAG----------CCCTTAAGTATCTTATATTTACATTTAGT-TTCAATTGGTTTTGGGT---------AGTG-T-GTCTGGTGCCTGGT--------------------------CATCTAATGCCAACGTCTCT----CTCGATC---------TCCC-------------T--CTCT--CTCTCTTC------CCTAGGTGGCTGTCATAGCTGGCAACTTGGAGCTGGCCGAAGTCATTGAGAACTA
droWil2 scf2_1100000004558:1633362-1633630 + GTGGCGCACAACGTGGCGCCCAGAATTTTGCCAACCAAACTCCCTATCAGGTA---------AACTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCAAAAACAAAAATAAATGGAAAT---------------TTT-ATG-------------TA-G-----------------------------------------------------------------------------------------------------------------------TCTTAATTTGTAGAGTATTTACTAGTATTTATCT----------TA------------------------------------------------------------AGT-AT-----TGTAGTCGGT---------AGTC-T-TGCTTGTAGTTAGTCGACAATATTGACAAGAATTGGACATTAACTAATG-----------------------------------------------TT--AATT--TTCATTTC------TCTAGGTTGCTGTCATAGCTGGTAACTTGGAATTAGCTGAAATTATTGAGAATTA
droVir3 scaffold_12875:1960842-1961141 + dvi_4959 GCGGCGCACAACGCGGTGCCCAGAACTTTGCCAACCAAACTCCCTATCAGGTA---------T----------------------------------------------------------------------------------------------------------------------------------------------TTA-------------------------------------------------------------------------------AAACAAAAACGA------ATCCAAATT-AAA-------GT-CTG-ACA-----------------------------------------------------CACTTTTA-GCTACAGTTAAT---------------------CGTAATATACT-C-GTA-TATACTTATA-AGATACTAGTTGTCTTC--ATG--------------GTACTTTT------------CACGTAGTTTTTGCT-TGTAGTCAATCCGAATTTAGTGCCTAGCC----------------AAGC-TTC-----------TGGTTTCAT--------------------------------------------------------------------------------T-CTGG-----------GCT---AATAT--AACT--TTA--TTC------TTCAGGTTGCTGTCATCGCTGGCAACTTGGAACTTGCCGAAATAATTGAGAACTA
droMoj3 scaffold_6496:23303018-23303331 - GCGGCGCACAACGCGGTGCCCAGAACTTTGCCAACCAAACTCCCTATCAGGTATTTAAAACAAAGCCAA-------------------TCCAAATTCAATAACATA------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------CACTTTTAGGCTACAAA--CAACGTAACGTAACGTAATGTAACGTAATATACT-C-GTAA------TATA-AGGTACTCGTAGTTATAG-CTG--------------GTACTTCT-T------CA----CGTAGTT--TGCT-TGTAGTCTATAC-----GAATT-----------------------------------------------GAA-------T-G-CT---------------------------------------------------------------TTTGCTTCTGGTTTCACGGTCGGCT---AATAA--AACT--CTGTCTAC------CTTAGGTTGCGGTCATCGCTGGCAACTTGGAACTAGCTGAGATCATTGAGAACTA
droGri2 scaffold_15112:4067554-4067873 + GCGGCGCACAACGCGGTGCCCAGAACTTTGCCAACCAAACTCCCTATCAGGTA-----------------------------------TTTAAAAACAAAAACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAAAT--------------------------C-----------------------AAATC-TCCAAATTACAAAA-TTGACACTTTTAAGCTACAATTACA---------------------ATTAAT--ACTTCAATAATATATGTATAAATATACAAGTAGTCTTAGTCTG--------------GTACTTATTT----------CATGTAGTC-TTGCT-TGCTATGTAGTG-----AAATT---------------------------------------------------------------------------------------------------------CAATATTAACATAATATTCATTTAAAATCTGG-----------GCT---AATATTTA--A--ATGTATCC------CTTAGGTGGCTGTCATCGCTGGGAACTTGGAACTGGCCGAAATCATTGAGAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTGTGGACTCAAGAACCTA------------CA-------CAGAGAAAAA----------------------------ATCATGCGAATTA------------TGCCAATGAAAAGACTTAAGA-------------------GGGCA----------------AGCAAAG--AAATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CTAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGCCTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACTTAAGT----------------TAGT-TTC-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGCATATGGAACTATGGTTGTTT---AATCC--AATT--CGAATTTC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGGCCGAAATCATTGAGAAC..2712.00200000002000000000
...................CCAGAACTTTGCCAATCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
...........................................................................................................................................................................................................................................................................................TCTGGGAC-----------------------CTAA-------AACTTT-TTGAATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGAAATCATTGAGA....2011.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGT-TTC-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGC.........................................................................................................2911.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATAAC--TT-G-GT---------------------------------------------------------------T.............................................................................................................1540.25100000000010000000
droSec2
GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTGTGGACTCAAGAACCTA------------CA-------CAGAGAAAAA----------------------------ATCATGCAAATTACTTTTACCCGTATGCCAATTAAAAGACTTAAGA----------------GGAGGGCA----------------AGCAAAG--AAATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CTAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGCATTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTTAGTC-----TAGTACTTAAGT----------------TAGT-TTC-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGTATATGGAACTATGGTTGTTT---AATCC--AATT--CAATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGAGCTGGCCGAAATCATTGA......2611.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGCCGGCAACTTGGAGCT.....................2311.0010001
dm3
GCGGCGCACAGCGCGGCGCACAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTCTGGACTCAAGAACCTA------------CA-------CAGAGAAAA--------------------------AAAATCATGCGAATTACTTTTACCCGTTTGCCAATGAAAAGATTTAAAA-------------------CCGCA----------------TGCAACG--ATATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CTAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGCCTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACTTAAGC----------------TAGT-TTT-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGTATATGGAACTATGGTTTTTT---AATCC--AATT--CGATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGCCGGCAACTTGGAGC......................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTTGGAGCTGGCCGAAATCA..........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTTGGAGCTGGCCGAA..............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGTA---------AAGCCCAGT----------------GTCTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGC....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGGCCGAAATCATTGAG.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGCTGTTATAGCCGGCA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCAACTTGGAGCTGGCCGAAATC...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-G------TGCTGCTGTAGTT-ATGCT-TGTAG.............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTATAGCCGGCAACTTGGAGCT.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CGCA----------------TGCAACG--ATATTT--TCTCT--GTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AATT--CGATTTCC------CATAGGTG...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC--AATT--CGATTTCC------CATAGGTGGCTGT..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.CGGCGCACAGCGCGGCGCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCGCACAGCGCGGCGCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTTGGAGCTGGCCGA...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................GCCAATCAAACTCCCTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AAGATTTAAAA-------------------CCGCA----------------TGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGGCCGAAATCATTGAGAACT.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACTATGGTTTTT......................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCTGGCCGAAATCATTGA......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATGCT-TGTAGTTCAGTC-----TAG..............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------TTGGTATATGGAACTAT.............................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGAGCTGGCCGAAATC...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......ACAGCGCGGCGCACAGAACTTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGGCCGAAATCATTGAGAA...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGCCGAAATCATTGAGAAC..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGGCCGAAATCATTGA......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT--CC----AGACCCCGGTCTGGACTCCAGAACCTA------------CA-------CAGAGCAAAT-------------------GGAAAATGGATCATGCGAATTACTTGTACTCTTATGCCGATGAAAAGAGGTTGGA-------------------GCGCA----------------TGCAAAG--TTATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CGAA-------AACTTT-TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGTCCTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACCTAAGT----------------TAGT-TTT-----------CGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGCTTATGGAACTATGGTTTTTT---AATCC--ACTT--CGATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....GCCCAGCGCGGCGCCCAGAACTTTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTATGGAACTATGGTTTTTT---A.................................................................................2411.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGAGCTGGCCGAA..............1811.0010000010
........CAGCGCGGCGCCCAGAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000100
droYak3
GCGGCGCCCAGCGCGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCCCAGT----------------GTCTGGACTCAAGAACCTA------------CA-------CAGAGAAAA--------------------------TCGATCGTGCGATTTAATGATAACCATAT--------------ATAACCATATATACTAATAACAGGAT-GCA----------------TGCAAAG--TCATTT--TCTCT--GTGTATATTCTGGGAC-----------------------CAAA-------AACTT--TTGAATTT------TGTT-A--ACAACTT-AGTAGT-TGATAGACTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTAGCTAAGT----------------TAGT-TTT-----------TGATTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGCTCATGGAACTATGGTTTTTT---AATCC--ACTT--CGATTTCC------CATAGGTGGCTGTTATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....GCCCAGCGCGGCGCCCAGAACTTTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAAATCATTGAGAACT.2011.00100100000000
.................GCCCAGAACTTTGCCAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
droEug1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--TCTCC--GTGTAACCTCTAGACC-----------------------CAAC-----CAAACTTT-TTGAATTT------TGTT-G--ATAACTT--GTAGT-TTGTAGTCTCTAAGTTTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTT-----TAGTACCTAAGT----------------TAGT-TTT-----------TGATTTAATAAC--TTTG-GT---------------------------------------------------------T----ACTGGTTCATGGTCTAACGGTTCTTT---AATCC--AATG--CTATTTTCTACAACATTAGGTGGCTGTCATAGCCGGCAACCTGGAGCTGGCTGAAATCATTGAGAACTASizeHit CountTotal NormTotal
No Reads
droBia1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTAAAC-------------------CTGCAATTAAAGAAACATACACACCGTCTATTTTTT--TCTCT--GTGTAAACTCTGGGCC-----------------------CTAA-------A----T-TTGAAATT------TGTTTA--ATAACTC--GTAGT-TTGTAGTCTCTAAG-ATGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTACCTAAGA----------------TAGT-TTT----------GTGATTTAATAACAGCT-C-GT---------------------------------------------------------------TTGGTTCGTGGAATTTCGGTTTTCT---AACAC--AACA--TTGTTTCC------CATAGGTGGCTGTCATTGCCGGCAACCTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotal
No Reads
droTak1
AAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG--ATATTT--TCTCT--GTGTAAACTCTGGACC-----------------------CTTA-------AACTTT-TTGAAATTTAGATTTGTT-GAGATAACTC--GTAGT-TTGTAGTCTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGAGCCTAAGT----------------TAGT-TTT-----------GGAATTAATAAC--TT-TCTT---------------------------------------------------------------TTGGTTTTTGGAATTACAGTC-TCT---AACCC--AATG--CTATCTCC------CTTAGGTGGCCGTCATAGCCGGCAACTTGGAGCTAGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotal
No Reads
droEle1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA--TCTCT--GTGTACACTCTGGATC-----------------------CAAAA----AAAACTTA-CTGAATTT------TGTT-G--ATAACTT--GTAGT-TTGTAGTCTTTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTC-----TAGTTAATAAGT----------------TAGTGTTT-----------TGAGTTAATAAC--TT-G-GT---------------------------------------------------------------TTGGTCTTTGGAATACCGGTT-TTT---AATGC--AATG--CTGTTTCC------CTTAGGTGGCTGTCATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotal
No Reads
droRho1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--ATATTT--TCTCT--GTGTATTCTCTGGAAC-----------------------CAAA-------AACTTA-CTGAATTT------TGTT-G--ATAACTT--GTAGT-GTGTAGTCTGTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGTT-----TAGTAACTAAGT----------------TAGT-TTT-----------TGATTTATTAAC--TT-G-GT---------------------------------------------------------------TTGGTTCTTGGAATTCCGGTTTTTT---AATCC--AATG--CTATTTCC------CATAGGTGGCTGTCATTGCCGGCAACTTGGAGCTGGCTGAAATCATTGAAAACTASizeHit CountTotal NormTotal
No Reads
droFic1
AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATACATAACA-------------------A--GA----------------AACAAGA--TTTTTT--TCTCT--GTGCATACTCTGAACC-----------------------GT---------AACTTT-TTGAATTT------AGTT-G--AAAACTT--GTAGT-TTGTTATACCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ACGCT-TGTAGTTCAGTC-----TAGTGACTAAGT----------------TAGT-CTT-----------TGACTTAATAAC--TTTG-AT---------------------------------------------------------------CTGGTTGCTGGAACTGCAGATTGTT---AACCC--AAAT--CCGTTTCT------CTCAGGTGGCTGTCATAGCCGGCAACTTGGAGCTGGCCGAAATCATTGAGAACTASizeHit CountTotal NormTotal
No Reads
droKik1
GCGGCGCCCAGCGTGGCGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGACCAGTGTC--------TCTCTGTCGGGAGTCTAGAAGTTA-----------GTA-------CAGGGCAGGAA----------------ATGTAAGATGG---------------------------CTAATAAAATTAATTAAAA-------------------T--CAATCTTAG-------------AAC--ATATTCCCTCTCT--GTGCAAACTCTGGACT-----------------------CTTG-------AAAGTA-ATGAATTT----TTCGTT-G--TTAACTC--GTAGTTTTGTAGTCTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-GTGCTGCTGCCGCTGTAGTT-ACGCTTTGTAGTTCAGTT----ACAGTGATTAAGT---------------TTAGT-TTTTGT--------TGAGTTAATAAC--TT-G-AT---------------------------------------------------------T----TTTGGTT---------CCGGTTATTT---AATAC--GTTTTGTGATTCCCCCC--CTCTAGGTGGCTGTCATAGCCGGCAACTTGGAACTGGCGGAGATAATTGAGAACTASizeHit CountTotal NormTotal
No Reads
droAna3
GGGGCGCCCAGCGAGGTGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCTAA-TGCCC----AGATCTCTA---------TAGATGCTAGATATTATGGATTATGGGAG------A-AGAATATGGA-----------------GTAG---------------------------ACAGTATAAT-AACAAATA----------------------TAATCTCA----------AG-TACC--ATATTCTCTTCCA--TTTTAATATCTAGTTT-----------------------CTAA-------TAATTA-AT-----A------TCTTTA--GTATCTTTATTAGTTTTGTTATTTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ACGCT-TGTAGTTGAGAC-----TAGTTCTTAAGT----------------TAGT-TTT----------GAGTTCTAATGATGACT-C------------------------------------------------------------T----ATCGGTT---------CTGGTCCTTTTATTAAAT--ACTA--TTATTCCA------TCTAGGTGGCTGTCATCGCCGGCAACTTGGAGCTAGCCGAGATAATTGAGAACTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......CCCAGCGAGGTGCCCAGAACTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
GCGGCGCCCAGCGAGGTGCCCAGAACTTTGCCAATCAAACTCCCTACCAGGTA---------AAGCTAA-TGCCCTATGAG-T----GTCTA----TGAGAGGCTAGATATT---------GGGAGATTGGGATGGAATATGGAAATAGTTATCATGCAAGAAAG---------------------------ATA-----------------------------------------TTAAATAAATCTAAATCCTACC--ATATTC--TCTCTTAACCTAATATCTAGTTT-----------------------CCAAGAAATAAAACTTTAT----TTT--AATTCAAA-G--ATTACTA--GTAGT-TTGTAATTTCTAAG-TTGGTAC------------------------------------------------------------------------------------------------------------TTTT-G------TGCTGCTGTAGTT-ATGCT-TGTAGTTCAGCC-----TAGTTCTTAAGT----------------TAGT-TTT----------GCCTTCTAATGAC--TT-G-TA---------------------------------------------------------T----TTTGGTT-CTGGATC--------TTATATTAAAT--ATTG--TTATTCTA------TCTAGGTGGCTGTCATCGCCGGCAACTTAGAGCTAGCCGAGATAATTGAGAACTASizeHit CountTotal NormTotal
No Reads
dp5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGA-ATGGAAT------------------------------------------------------------------------------------------------------------TATG-C------TGCTACTGTAGTT-ACGCT-TGTAGTCTAG----------CCCTTAAGTATCTTATATTTACATTTAGT-TTCAATTGGTTTTGGGT---------AGTG-T-GTCTGGTGCCTGGT--------------------------CATCTAATGCCAACGTCTCT----CTCGATC---------TCCC-------------T--CTCT--CTCTCTTC------CCTAGGTGGCTGTCATAGCTGGCAACTTGGAGCTGGCCGAAGTCATTGAGAACTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGTCATAGCTGGCAAC.............................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAGCTGGCAACTTGGAGCTGGC..................2611.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAGCTGGCAACTTGGAGCTG....................2411.0010100000000
droWil2
GTGGCGCACAACGTGGCGCCCAGAATTTTGCCAACCAAACTCCCTATCAGGTA---------AACTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCAAAAACAAAAATAAATGGAAAT---------------TTT-ATG-------------TA-G-----------------------------------------------------------------------------------------------------------------------TCTTAATTTGTAGAGTATTTACTAGTATTTATCT----------TA------------------------------------------------------------AGT-AT-----TGTAGTCGGT---------AGTC-T-TGCTTGTAGTTAGTCGACAATATTGACAAGAATTGGACATTAACTAATG-----------------------------------------------TT--AATT--TTCATTTC------TCTAGGTTGCTGTCATAGCTGGTAACTTGGAATTAGCTGAAATTATTGAGAATTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCTGAAATTATTGAGAAT..2211.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAGAATTGGACATTA.....................................................................................................................................1911.00100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATAGCTGGTAACTT...........................1811.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGAATTAGCTGAAATTATTGAGA....2711.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGAATTAGCTGAAATTATTGAGA....2811.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGCTGTCATAGCTGGTA...............................2111.00100010
droVir3
GCGGCGCACAACGCGGTGCCCAGAACTTTGCCAACCAAACTCCCTATCAGGTA---------T----------------------------------------------------------------------------------------------------------------------------------------------TTA-------------------------------------------------------------------------------AAACAAAAACGA------ATCCAAATT-AAA-------GT-CTG-ACA-----------------------------------------------------CACTTTTA-GCTACAGTTAAT---------------------CGTAATATACT-C-GTA-TATACTTATA-AGATACTAGTTGTCTTC--ATG--------------GTACTTTT------------CACGTAGTTTTTGCT-TGTAGTCAATCCGAATTTAGTGCCTAGCC----------------AAGC-TTC-----------TGGTTTCAT--------------------------------------------------------------------------------T-CTGG-----------GCT---AATAT--AACT--TTA--TTC------TTCAGGTTGCTGTCATCGCTGGCAACTTGGAACTTGCCGAAATAATTGAGAACTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCATCGCTGGCAACTTGGAACTTGC..................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------GTACTTTT------------CACGTAGTTTTTGCT-TGT...............................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
......CACAACGCGGTGCCCAGAACTTTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTCATCGCTGGCAACTTGGAAC......................2611.001000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCCGAAATAATTGAGAA...2111.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTA--TTC------TTCAGGTTGCTGTC.........................................2111.001000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTGGCAACTTGGAACT.....................2011.001000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGGCAACTTGGAACTTGCC.................2211.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCAATCCGAATTTAGTGCCTA........................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
GCGGCGCACAACGCGGTGCCCAGAACTTTGCCAACCAAACTCCCTATCAGGTATTTAAAACAAAGCCAA-------------------TCCAAATTCAATAACATA------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------CACTTTTAGGCTACAAA--CAACGTAACGTAACGTAATGTAACGTAATATACT-C-GTAA------TATA-AGGTACTCGTAGTTATAG-CTG--------------GTACTTCT-T------CA----CGTAGTT--TGCT-TGTAGTCTATAC-----GAATT-----------------------------------------------GAA-------T-G-CT---------------------------------------------------------------TTTGCTTCTGGTTTCACGGTCGGCT---AATAA--AACT--CTGTCTAC------CTTAGGTTGCGGTCATCGCTGGCAACTTGGAACTAGCTGAGATCATTGAGAACTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCT-T------CA----CGTAGTT--TGCT-TGTA..............................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACTTGGAACTAGCTGA...............2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTAGTTATAG-CTG--------------GT....................................................................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACT-C-GTAA------TATA-AGGT......................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
GCGGCGCACAACGCGGTGCCCAGAACTTTGCCAACCAAACTCCCTATCAGGTA-----------------------------------TTTAAAAACAAAAACCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAAAT--------------------------C-----------------------AAATC-TCCAAATTACAAAA-TTGACACTTTTAAGCTACAATTACA---------------------ATTAAT--ACTTCAATAATATATGTATAAATATACAAGTAGTCTTAGTCTG--------------GTACTTATTT----------CATGTAGTC-TTGCT-TGCTATGTAGTG-----AAATT---------------------------------------------------------------------------------------------------------CAATATTAACATAATATTCATTTAAAATCTGG-----------GCT---AATATTTA--A--ATGTATCC------CTTAGGTGGCTGTCATCGCTGGGAACTTGGAACTGGCCGAAATCATTGAGAATTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:40 AM