dsi_1226

Name	Class	Family	Strand
(TATG)n	Simple_repeat	Simple_repeat	+

TGAAACATTAAAAAAACATAGAAAATAAACGCAACTTAGCAAAGTGATATGTAAGTAAATAAATAAATATGCATACACACATACATACATATGTACATAAGCAAGTTACGTTGTATGCACGACCTTATTGAGTGTATTGATAGTACTAGAATGCGGTTCATCCCATTCGCGGGCGCATTTGACTTGGCATTTAACGGTCTACACGTGCAGCAACAATGTAACTTTGACGCCAGCGTCGACAGGTGTAACC ************************************************(((.(((.((......)).))).))).......((((((.((((((........)).))))))))))...((((...((((((((......(((....(((((((......(((......)))))))))).)))..)))))))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
.........................................................................................................................................................CGGTTCATCCGGTTCGCGGG.............................................................................	20	2	2	1.50	3	0	3	0	0
...................................................................................................................TGCACGACCTTATTGAGTGTATG................................................................................................................	23	1	1	1.00	1	1	0	0	0
.........................................................................................................................................................CGGTTCATCCGGTTCGCGGGA............................................................................	21	3	2	1.00	2	0	2	0	0
...........................................................................................................ACGTTGTATGCACCA................................................................................................................................	15	1	7	0.71	5	5	0	0	0
.......................................................................................................................................................................CGCGGGCGCGTTTGA....................................................................	15	1	3	0.33	1	0	0	1	0
..........................................AGTGGTATGTAAGTAA................................................................................................................................................................................................	16	1	4	0.25	1	1	0	0	0
............................................................................................................................TTACTGAGTGGATTGATA............................................................................................................	18	2	5	0.20	1	1	0	0	0
............................................................................................................................TTATTGAGTGGATTGA..............................................................................................................	16	1	5	0.20	1	1	0	0	0
............................................................................................................................TTACTGAGTGGATTGATGGT..........................................................................................................	20	3	10	0.10	1	1	0	0	0
...............................................................................................................................................TAATAGGATGCGGTACATC........................................................................................	19	3	10	0.10	1	1	0	0	0
..............AACATAGAAAATAAA.............................................................................................................................................................................................................................	15	0	20	0.05	1	0	0	0	1

ACTTTGTAATTTTTTTGTATCTTTTATTTGCGTTGAATCGTTTCACTATACATTCATTTATTTATTTATACGTATGTGTGTATGTATGTATACATGTATTCGTTCAATGCAACATACGTGCTGGAATAACTCACATAACTATCATGATCTTACGCCAAGTAGGGTAAGCGCCCGCGTAAACTGAACCGTAAATTGCCAGATGTGCACGTCGTTGTTACATTGAAACTGCGGTCGCAGCTGTCCACATTGG ************************************************(((.(((.((......)).))).))).......((((((.((((((........)).))))))))))...((((...((((((((......(((....(((((((......(((......)))))))))).)))..)))))))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries
.....GTAATTTTTTTGTATCTT...................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................GTAAATTGCCAGATGTGCACGTCGTTG....................................	27	0	1	1.00	1	1	0	0	0	0
....................................ATCGTTTCACTATACATTCAT.................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
.......................................................................GTATGTGTGGATGTATGGAT...............................................................................................................................................................	20	2	18	0.06	1	0	0	0	1	0
..................................................................................TGTATGTATACATGTAT.......................................................................................................................................................	17	0	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:3018257-3018506 -	dsi_1226	TG---AAACAT-----TAAAAAAACATA--GAAAATAAAC---------------------GCAACT--------TAGCAAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------TA--TGTAAGTAAATAAATA--------------------------------------------AATA--TGC--------------A----TACACACATACATAC-AT-----------------------------ATGTACATAAGCAAGTTACGTTGTATGCACG------------------------------------------------------ACCTTATTGAGTGTATTGATAG------TACTAGAATGCGGTTCATCCCATTCGCGGG------CGCATTTGACTTGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCAGCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-ACC
droSec2	scaffold_10:2969650-2969964 -		TG---AAACAT-----TAAAAAAACATA--GAAAATAAACGCG--------GCACACAGGAGCAACT--------TAGCAAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------TA--TGTAAGTAAATAAATAAATATGCATACATA--CATA------------------------CATACATAC--------------ATACATAC----ATACATAC-A-TACATACATACATACATACATACATACATATGTACATAAGCAAGTTACGTTGTATGCACG------------------------------------------------------ACCTTATTGAGTGTATTGATAC------TACTAGAATGCGGTTCATCCCATTCGCGGG------CGCATTTGACTTGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCAGCGTCAACA----------------------------------------------------------------------------GGCAGGTG-----------------TA-ACC
dm3	chrX:3264798-3265048 -		GG---AAACAT-----CGAAAATATAGA--AAGAAT----------------------GGAGCAACT--------CAGGAAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------AA--TGTAAGTACATA------------------------------------------------AATA--TAC--------------A----TATGTACATACATAC-AT-----------------------------ATTAGCATTAGCAGGTTACGTTGTATGCACA------------------------------------------------------ACCTTATTGAGTGTATTGATAGTACTAGTACTAGAATGAGGTTCATCCCATTCGCAGG------CGCATTTGACTCGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCAGCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CCC
droEre2	scaffold_4690:677278-677545 -		TGTCGATATAT-----TAAAAAAGGACA--AAAAAG---------------GACCAAAGGAGCAACG--------AAGCAATGTAA----------------------------------------------------------------------------------------------------------------------------------------------------GA--TGTATGTGGATAG----------------------------CACAGTGTAGCA--GTGTATG----TAC--------------G----TACACACATACATACAAT-----------------------------A--TGTATAAGCAAGTTCCATA--------------------------------------------------------TTGAATGATCTTATTGATAGTGTTGATAG------TGCTAGATTGAGGTTCATCCCATCACCAGG------CGCATTTGACATGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCGCCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CTC
droYak3	X:5112779-5113060 +		TGTCGATAGAT-----TAGAAAAAGATA--AGAAAG-----AATGCGTGGAAGGCGAAGAAACACCAAAGCAACTTA--------A----------------------------------------------------------------------------------------------------------------------------------------------------GA--TGTATGT----------------------ACATGTGGATACCACAGTGTAGCTTCATTTA------------------------------------------T-GT-----------------------------ATGTATGTAAGCAAGTTACATAA-A----TG------------------------------------TGTACATACGGCTGTACGATCTTATCGACAGTATTGCTAA------TTCTGGATTGAGGTTCATCCCATCCCCAGG------CGCAGTTGACTTGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCGGTGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CTC
droEug1	scf7180000409178:36485-36760 -		TG---ATAAAT-----TTCAAAAATCGATAAATGAA-----AGTATTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTATACTATAATT--ATTA------------------------ATTACTTAAAAGTAAAATTTTAAAT---AATTTTTTAACATAC-AT-----------------------------TATTACAGAAACCAAGTATTATGTGTGCCAGACGTTTGTTTTATTTAATTATACGTATGTATTCAAA------TAAA----------------------TTTTTTAA------TATTATAATGCATTTGATCT----------------GACATTTGACTTGATATTTAACAGTCTACACGTGCAGCAACAATGTA------AGGTTGACGCCGCCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TT-CCT
droBia1	scf7180000302126:1915899-1916001 +		GA---GTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTACCCATCGCCAGG------GGCCTTTGACTTGATATTTAACGGTCTACACGTGCAGCAACAATGTA------ACACCGACGCCTCTGTC--------------------------------------------------------------------------------GACAGGTG-----------------TCGACT
droTak1	scf7180000415360:238142-238252 -		TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------TACTATAATGAATTTCACCCCATCTCTAGG------TTCACTCGACTTGATATTTAACGGTCTACACGTGCAGCAACAATGTA------ACCCTGACGCCGCCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TCGACT
droEle1	scf7180000490996:459032-459145 -		AT---G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TATTCTAATGCATTTCGACCCACCCCTATTTATAGTGCCATTTAACTTGATGTTTAACGGTTTACACGTGCCGCAACAATGTA------GCATTGACGCC---GTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CTT
droRho1	scf7180000779337:480067-480189 -		TT---AATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAT-------------TTATAATGCATATCGCCCCATCTCTATTTTTAGTGGCATTTGACTTGATATTTAACGGTCTACGCGTGCAGCAACAATGTAT--GTAACTTAGACGCC---GTC--------------------------------------------------------------------------------GACAGGTG-----------------TT-CCT
droFic1	scf7180000454072:54760-54834 +		CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAACTTGATATTGAACGGTCTACACGTGCAGCCACAATGTA------ACTTTAACGCCGTTTTT--------------------------------------------------------------------------------GCAAGGTG-----------------TT-TCT
droKik1	scf7180000302258:317415-317838 -		TA---TAGCATTACATTGAAACTGCATT--AAAATC---------------AACTAATTAATTTTTA--------AATTAATTTTAAATATAATTCAACATTTAAAAATAATACAATCTGTTCACATTAAGCAAATTACCAGACTTCAGCTTGACCAGATTTCGGAAATTGTATTCTTTATTACTTTGTTTATTTTTTTTCTGTTTTATAAAACTTAACAAGTAGCTTGTAAGCAATAAACATGTTT---AAAGAAT------------------------------------------------AT--------------T----AAAATACATATGT-------------------------------------------------------------------------------------------------------------------------------------------------------CGAATATA-TTTAAGCCATCTCTAGTCAT-----AGTTTTACTTGATATTTAACGGTTTACACGTGCATCAACAATGTA------GCTTTAACGACGACGCTAATATATGCTTGTAGTATATAGTAAGTAAGTATTAGGTAGTATATATACATAGTAGCTGATAAGGCGGACTGGAGCCGAGGACAGGTG-----------------TG--CT
droAna3	scaffold_12613:101919-102004 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATCACTAGC------CAGACTTTATGTGATATTTAACGGTTTACACGTGCAGCAACAATGTAACAGTAACGTTGACGCCGGCGTC--------------------------------------------------------------------------------AGC----------------------------
droBip1	scf7180000396038:4588-4666 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATCACTAGC------CAGATTTTATGTGATATTTAACGGTTTACACGTGCAGCAACAATGTA------ACATTAACGTTGACGCC--------------------------------------------------------------------------------GGC----------------------------
droWil2	scf2_1100000004952:554520-554646 +		GT---GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTGTG--TATG------------------------GATGTATAC--------------ATATGCGC----GTACATCA-A-CAGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAATTTGCAATTGAACCAAT-TCG
droVir3	scaffold_12875:10037841-10037958 +		CA---AAACAT-----TTACA-CATACA--AAAATCAAACGCG---------------------TCG--------CTTTTACACAG----------------------------------------------------------------------------------------------------------------------------------------------------TA--CAAAATCGGCT--------------------------------------------ACTTATGCA--CAC--------------A----CACACACACACACAT-AT-----------------------------ATATATATATATATGTTATATGGTATGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6473:14100468-14100612 +		AT---GTAAAA-----TA------------AAAGAC-----AGTTAATTTA--------ATGCTATT--------CAATCAATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACATATGTATGT--ACATATG------------------------------TAC--------------A----TATGTACATACATAT-GT---------AT------------------GTATGTATTAACATGTATGTATGTATGAACA------------------------------------------TGCATAT--------GTATCAAGTGTATCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
droGri2	scaffold_15245:13255205-13255284 -		AT---ACATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------------------A--CATA------------------------CATACATAC--------------ATACATACATACATACATAC-AT-----------------------------ACATACATACACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCGTACAT------------------------------------------------------------------------------------------TAGTA-----------------TG-TAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TG---AAACAT-----TAAAAAAACATA--GAAAATAAAC---------------------GCAACT--------TAGCAAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------TA--TGTAAGTAAATAAATA--------------------------------------------AATA--TGC--------------A----TACACACATACATAC-AT-----------------------------ATGTACATAAGCAAGTTACGTTGTATGCACG------------------------------------------------------ACCTTATTGAGTGTATTGATAG------TACTAGAATGCGGTTCATCCCATTCGCGGG------CGCATTTGACTTGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCAGCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-ACC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................TGCACG------------------------------------------------------ACCTTATTGAGTGTATG....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................AACATA--GAAAATAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

TG---AAACAT-----TAAAAAAACATA--GAAAATAAACGCG--------GCACACAGGAGCAACT--------TAGCAAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------TA--TGTAAGTAAATAAATAAATATGCATACATA--CATA------------------------CATACATAC--------------ATACATAC----ATACATAC-A-TACATACATACATACATACATACATACATATGTACATAAGCAAGTTACGTTGTATGCACG------------------------------------------------------ACCTTATTGAGTGTATTGATAC------TACTAGAATGCGGTTCATCCCATTCGCGGG------CGCATTTGACTTGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCAGCGTCAACA----------------------------------------------------------------------------GGCAGGTG-----------------TA-ACC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GG---AAACAT-----CGAAAATATAGA--AAGAAT----------------------GGAGCAACT--------CAGGAAAGTGA----------------------------------------------------------------------------------------------------------------------------------------------------AA--TGTAAGTACATA------------------------------------------------AATA--TAC--------------A----TATGTACATACATAC-AT-----------------------------ATTAGCATTAGCAGGTTACGTTGTATGCACA------------------------------------------------------ACCTTATTGAGTGTATTGATAGTACTAGTACTAGAATGAGGTTCATCCCATTCGCAGG------CGCATTTGACTCGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCAGCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTTCATCCCATTCGCAGG------CGCATT...............................................................................................................................................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGACTCGGCATTTAACG..............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................ACATACATAC-AT-----------------------------ATTAGCAT..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CAT-----CGAAAATATAGA--AAGAAT----------------------GGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGGTTCATCCCATTC................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AAACAT-----CGAAAATATAGA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGTCGATATAT-----TAAAAAAGGACA--AAAAAG---------------GACCAAAGGAGCAACG--------AAGCAATGTAA----------------------------------------------------------------------------------------------------------------------------------------------------GA--TGTATGTGGATAG----------------------------CACAGTGTAGCA--GTGTATG----TAC--------------G----TACACACATACATACAAT-----------------------------A--TGTATAAGCAAGTTCCATA--------------------------------------------------------TTGAATGATCTTATTGATAGTGTTGATAG------TGCTAGATTGAGGTTCATCCCATCACCAGG------CGCATTTGACATGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCGCCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TGTCGATAGAT-----TAGAAAAAGATA--AGAAAG-----AATGCGTGGAAGGCGAAGAAACACCAAAGCAACTTA--------A----------------------------------------------------------------------------------------------------------------------------------------------------GA--TGTATGT----------------------ACATGTGGATACCACAGTGTAGCTTCATTTA------------------------------------------T-GT-----------------------------ATGTATGTAAGCAAGTTACATAA-A----TG------------------------------------TGTACATACGGCTGTACGATCTTATCGACAGTATTGCTAA------TTCTGGATTGAGGTTCATCCCATCCCCAGG------CGCAGTTGACTTGGCATTTAACGGTCTACACGTGCAGCAACAATGTA------ACTTTGACGCCGGTGTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CTC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

TG---ATAAAT-----TTCAAAAATCGATAAATGAA-----AGTATTTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTATACTATAATT--ATTA------------------------ATTACTTAAAAGTAAAATTTTAAAT---AATTTTTTAACATAC-AT-----------------------------TATTACAGAAACCAAGTATTATGTGTGCCAGACGTTTGTTTTATTTAATTATACGTATGTATTCAAA------TAAA----------------------TTTTTTAA------TATTATAATGCATTTGATCT----------------GACATTTGACTTGATATTTAACAGTCTACACGTGCAGCAACAATGTA------AGGTTGACGCCGCCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TT-CCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GA---GTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTACCCATCGCCAGG------GGCCTTTGACTTGATATTTAACGGTCTACACGTGCAGCAACAATGTA------ACACCGACGCCTCTGTC--------------------------------------------------------------------------------GACAGGTG-----------------TCGACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------TACTATAATGAATTTCACCCCATCTCTAGG------TTCACTCGACTTGATATTTAACGGTCTACACGTGCAGCAACAATGTA------ACCCTGACGCCGCCGTC--------------------------------------------------------------------------------GACAGGTG-----------------TCGACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AT---G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TATTCTAATGCATTTCGACCCACCCCTATTTATAGTGCCATTTAACTTGATGTTTAACGGTTTACACGTGCCGCAACAATGTA------GCATTGACGCC---GTC--------------------------------------------------------------------------------GACAGGTG-----------------TA-CTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TT---AATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAT-------------TTATAATGCATATCGCCCCATCTCTATTTTTAGTGGCATTTGACTTGATATTTAACGGTCTACGCGTGCAGCAACAATGTAT--GTAACTTAGACGCC---GTC--------------------------------------------------------------------------------GACAGGTG-----------------TT-CCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAACTTGATATTGAACGGTCTACACGTGCAGCCACAATGTA------ACTTTAACGCCGTTTTT--------------------------------------------------------------------------------GCAAGGTG-----------------TT-TCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TA---TAGCATTACATTGAAACTGCATT--AAAATC---------------AACTAATTAATTTTTA--------AATTAATTTTAAATATAATTCAACATTTAAAAATAATACAATCTGTTCACATTAAGCAAATTACCAGACTTCAGCTTGACCAGATTTCGGAAATTGTATTCTTTATTACTTTGTTTATTTTTTTTCTGTTTTATAAAACTTAACAAGTAGCTTGTAAGCAATAAACATGTTT---AAAGAAT------------------------------------------------AT--------------T----AAAATACATATGT-------------------------------------------------------------------------------------------------------------------------------------------------------CGAATATA-TTTAAGCCATCTCTAGTCAT-----AGTTTTACTTGATATTTAACGGTTTACACGTGCATCAACAATGTA------GCTTTAACGACGACGCTAATATATGCTTGTAGTATATAGTAAGTAAGTATTAGGTAGTATATATACATAGTAGCTGATAAGGCGGACTGGAGCCGAGGACAGGTG-----------------TG--CT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATCACTAGC------CAGACTTTATGTGATATTTAACGGTTTACACGTGCAGCAACAATGTAACAGTAACGTTGACGCCGGCGTC--------------------------------------------------------------------------------AGC----------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATCACTAGC------CAGATTTTATGTGATATTTAACGGTTTACACGTGCAGCAACAATGTA------ACATTAACGTTGACGCC--------------------------------------------------------------------------------GGC----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droWil2

GT---GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTGTG--TATG------------------------GATGTATAC--------------ATATGCGC----GTACATCA-A-CAGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAATTTGCAATTGAACCAAT-TCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................AGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGG..........................................................................................................................	26	20	2.10	42	0	0	1	41	0
..................................................................................................................................................................................................................................................TGCGAATGAAT-------TATGTGTG--TATG------------------------G....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................AGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG...........................................................................................................................	25	20	1.20	24	0	2	0	22	0
....................................................................................................................................................................................................................................................................TATGTGTG--TATG------------------------GATGTATAC--------------ATA...........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.T---GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTGTG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.......TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTGTG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.......TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTGTG--TTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................GAAT-------TATGTGTG--TATG------------------------GATGTATAC--------------A.............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................TGCGAATGAAT-------TATGTGTG--TATG------------------------GA...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATA.......................................................................................................................	26	20	0.40	8	0	4	2	2	0
.T---GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	19	0.37	7	0	4	0	3	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAATTTGCAAT.............	28	11	0.36	4	0	4	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................................................	21	20	0.30	6	0	0	0	6	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------------------------------------------------------------------------AGGAGATTAATTTGCAATTGAACC.......	26	11	0.27	3	0	1	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAATTTG.................	24	12	0.25	3	0	2	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................AGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG.............................................................................................................................	23	20	0.25	5	0	1	0	4	0
.......TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.21	4	0	3	0	1	0
.................................................................................................................................................................................................................................................................................................................................................ATCA-A-CAGATGACGATGTATGTATG...................................................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0
................................................................................................................................................................................................................................................................................................................TAC--------------ATATGCGC----GTACATCA-A-CAGATGA................................................................................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	4	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGA.........................................................................................................................	27	20	0.20	4	0	4	0	0	0
..............................................................................................................................................................................................................................................................................TATG------------------------GATGTATAC--------------ATATGCGC----G.................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................TATG------------------------GATGTATAC--------------ATATGCGC----GTA...............................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAAT....................	25	12	0.17	2	0	1	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................ATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGG..........................................................................................................................	24	20	0.15	3	0	1	0	2	0
............................................................................................................................................................................................................................................................................................................................................................TGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGAT........................................................................................................................	25	20	0.15	3	0	2	0	1	0
............................................................................................................................................................................................................................................................................................................................................................TGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATAC......................................................................................................................	27	20	0.15	3	0	3	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CA-A-CAGATGACGATGTATG.......................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGG..........................................................................................................................	25	20	0.15	3	0	2	1	0	0
............................................................................................................................................................................................................................................................................................................TGTATAC--------------ATATGCGC----GTACAT............................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0
.....GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	19	0.11	2	0	1	0	1	0
.T---GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	19	0.11	2	0	1	0	1	0
...................................................................................................................................................................................................................................................................................................................................................CA-A-CAGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................................................	25	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGA.........................................................................................................................	24	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................CA-A-CAGATGACGATGTATGTATG...................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGG..........................................................................................................................	23	20	0.10	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................TATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCG.................................................................................................................	24	20	0.10	2	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................TATGCGC----GTACATCA-A-CAGATGACGA.............................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAATTTGCA...............	26	11	0.09	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGATTAATTTGCAATTGAACCA......	25	11	0.09	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------------------------------------------------------------------------AGGAGATTAATTTGCAATTGAACCAAT-...	29	11	0.09	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAATTTG.................	26	12	0.08	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATACGCGCGTG--------------------------------------------------------------------------------AGGAGATTAATT...................	26	12	0.08	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------------------------------------------------------------------------AGGAGATTAATTTGCAATTGAAC........	25	12	0.08	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................TGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AGGAGAT........................	27	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AGGAGAT........................	25	13	0.08	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AGGAGA.........................	24	16	0.06	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AGGAG..........................	25	18	0.06	1	0	0	1	0	0
......GTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
.....GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	19	0.05	1	0	0	0	1	0
.T---GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------...............................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG...........................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ACATCA-A-CAGATGACGATGTATG.......................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................TATGCGC----GTACATCA-A-CAGATGA................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGAT........................................................................................................................	24	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------...............................	25	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................GTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCG.................................................................................................................	25	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................C--------------ATATGCGC----GTACATCA-A-CA.....................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................AATGTGCGAATGAAT-------TATGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................CGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACT.....................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------A..............................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................TGTGCGAATGAAT-------TATGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACG.....................................................................................................................	28	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TCA-A-CAGATGACGATGTATGTATGT..................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AGG............................	25	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATCA-A-CAGATGACGATGTATGTAT....................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.T---GGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTGCGAATGAAT-------TATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................A-CAGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGT............................................................................................................................	26	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................CA-A-CAGATGACGATGTATGTATGT..................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATCA-A-CAGATGACGATGTATGTATGT..................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGA.........................................................................................................................	26	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AG.............................	26	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................C--------------ATATGCGC----GTACATCA-A-CAGATG.................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGGATACGCGCGTG--------------------------------------------------------------------------------AG.............................	19	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CAGATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG...........................................................................................................................	26	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................GATGACGATGTATGTATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG.............................................................................................................................	22	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ATCA-A-CAGATGACGATGTATGTA.....................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

droVir3

CA---AAACAT-----TTACA-CATACA--AAAATCAAACGCG---------------------TCG--------CTTTTACACAG----------------------------------------------------------------------------------------------------------------------------------------------------TA--CAAAATCGGCT--------------------------------------------ACTTATGCA--CAC--------------A----CACACACACACACAT-AT-----------------------------ATATATATATATATGTTATATGGTATGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................CACACACACACAT-AT-----------------------------ATATATA...................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droMoj3

AT---GTAAAA-----TA------------AAAGAC-----AGTTAATTTA--------ATGCTATT--------CAATCAATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACATATGTATGT--ACATATG------------------------------TAC--------------A----TATGTACATACATAT-GT---------AT------------------GTATGTATTAACATGTATGTATGTATGAACA------------------------------------------TGCATAT--------GTATCAAGTGTATCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AT---ACATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------------------A--CATA------------------------CATACATAC--------------ATACATACATACATACATAC-AT-----------------------------ACATACATACACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCGTACAT------------------------------------------------------------------------------------------TAGTA-----------------TG-TAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_1226

x:3018307-3018456 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads