ID:

dsi_12254

 Coordinate:

3r:17235997-17236057 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_17235881_17235996_+]; CDS [3r_17235881_17235996_+]; CDS [3r_17236058_17236271_+]; exon [3r_17236058_17236271_+]; intron [3r_17235997_17236057_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
TGGTCGATGAGAGTATGCTGAATGACATCAAGATACATTGGTACTTTAAGGTATGTACTGTTTGATTTCTATTATTGTTGGTACCCATTGATAAGTATTAAACCATTTCAGCAATGCAGCGAAAACAATTGCCATCAGTTGGGATCTGTGGATGAGTGGAC
**************************************************.........(((((((.....((((((.(((...))).))))))..)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............TGCTGAATGACATCAAGATACATTGG........................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................GAATGACATCAAGATACATTG......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................GGTATGTACTGTCTGA................................................................................................ 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................CATTGATAAGTATTAAACT......................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................AATTGCCATCAGTTGGGATCTGT............ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................GCTGAATGACATCAAGATACATTG......................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................TTGCCATCAGTTGGGTTCTGTGGATGAG..... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0
TGGTCGATGAGAGTATGCTGAATGACA...................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................TGCCATCAGTTGGGATCTGTTGATGAG..... 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0
..................TGAATGACATTAAGAGAC............................................................................................................................. 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0
..........................................................................................................TTCAGCAATGCACCGTA...................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 1 0
................................................................................................................AATGCAGCGAAAACC.................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................CTGTTTGATTTCTAA......................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
..GTCGAGGAGAGTATCCTA............................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACCAGCTACTCTCATACGACTTACTGTAGTTCTATGTAACCATGAAATTCCATACATGACAAACTAAAGATAATAACAACCATGGGTAACTATTCATAATTTGGTAAAGTCGTTACGTCGCTTTTGTTAACGGTAGTCAACCCTAGACACCTACTCACCTG
**************************************************.........(((((((.....((((((.(((...))).))))))..)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
..........................................................................................................................TTCGTTAAGGGTAGTCA...................... 17 2 20 0.05 1 1
..........................................................................................................................TTTGTTACCGGGAGTC....................... 16 2 20 0.05 1 1

Generated: 04/23/2015 at 02:42 PM