dsi_12251

exon [3r_19054935_19054997_+]; exon [3r_19055062_19055226_+]; CDS [3r_19054935_19054997_+]; CDS [3r_19055062_19055226_+]

Sense Strand Reads

Anti-sense strand reads

##################################################----------------------------------------------------------------################################################## CTGTCTTTGTGTGTCTGCTGCTGGGATTGGTGGGCGTGGCCACGCCAAGGGTAAGTGACCCAGTTGAGCGGACTGAATCCGAATTGCGACGCTCGATTGATCGTGACTTTGCAGCGTATGCGAGGTCCGCAAGCTGACCGACTGGCGATCACCCTGTACTACGA ************************************************...((((...(((((...((((.....)))))))))...)))).********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	GSM343915 embryo	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	M053 female body	O002 Head	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
..................................................GTAAGTGACCCAGTTGAGC...............................................................................................	19	0	1	18.00	18	12	4	0	2	0	0	0	0	0	0	0
..................................................GTAAGTGACCCAGTTGAGCG..............................................................................................	20	0	1	16.00	16	1	0	11	0	1	0	0	1	1	1	0
.......................................................TGACCCAGTTGAGCGGAC...........................................................................................	18	0	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0
..................................................GTAAGTGACCCAGTTGAG................................................................................................	18	0	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................TGATCGTGACTTTGCAGA.................................................	18	1	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATGCGAGGTCCGCAAGCTG............................	19	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..................................................GTAAGTGACCCAGTTGAGCGT.............................................................................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
......................................................GTGACCCAGTTGAGCGGACTGAATC.....................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................................................GTAAGTGACCCAGTTGAGCGGAC...........................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TGACCCAGTTGAGCGGACT..........................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................AGCTGACCGACTGGCGATC..............	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..................................................GTAAGTGACCCAGTTGAGCGGA............................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......................................................................ACTGAATCCGAATTGCGACG.........................................................................	20	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GCTGGGATTGGTGGGCGT...............................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................TGAATCCGAATTGCGACGCTC......................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GACCGACTGGCGATCACCC..........	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................TGAATCCGAATTGCGACGCTCGAT...................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CCGCAAGCTGACCGACTG....................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CGACTGGCGATCACC...........	15	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droSim2	3r:19054948-19055111 +	dsi_12251	CTGTCTTTGTGTGTCTGCTG---CTGGGATTGGTGGGCGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGAGCGG--A-----CTGAA------TC-CGAA-T--TGCGACGCT--CGATTGATCGTG------ACTTTGCAGCGTATGCGAGGTC---------CGCAAGCTGACCGACTGGCGATCACCCTGTACTACGA
droSec2	scaffold_0:19862384-19862547 +	dse_571	CTGTCTTTGTGTGTCTGCTG---CTGGGATGGGTGAGCGTGGCCACGCTAAGGGTAAGTGACCCAG----------TTGAGCGG--A-----CTGAA------TC-CGAA-T--TGCGACGCT--CGATTGATCGTG------ACTTTGCAGCGTTTGCGAGGTC---------CGCAAGCTGACCGACTGGCGATCACCCTGTACTACGA
dm3	chr3R:19504700-19504865 +		CTGTCTTTGTGTGTCTGCTG---CTGGGATGGGTGGGCGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGATCGG--A-----CTGAA------TCCCGAA-T--TGCGACGCTCCC-ATTGATCGTG------ACTTTGCAGCGTTTGCGCGGAC---------CGCAAGCTGACCGACTGGCGATCACCCTGTACTACGA
droEre2	scaffold_4820:8540105-8540256 -		CGGTTTTTGTGTGTCTGCTG---CTGGGATGGGTGGGCGTGGCCATGCCAAGGGTAAGTGACCCAG----------TTGTGGGG---------TGAA------TC-CGAG-T-------------C-GTTGATCGTG------ACATTGCAGCGGCTGCGTGGAG---------CGCAAGCTGACCGACTGGCAATCACCCTGTACTACGA
droYak3	3R:20401443-20401603 +		CTGTCTTTGTCTGTCTGCTG---CTGGGATGGGTGGGCGTGGCTGCGCCAAGGGTAAGTGACCCAA----------TTGAGCGA---------TGAA------TC-CGCA-T--TGCGACGCT--C-GCTGATCGTG------ACATTGCAGCGTCTGCTTGGAC---------CGCAAACTGACCGACTGGCCATCACCCTGTACTACGA
droEug1	scf7180000409798:892176-892336 -		T-ATCAATGTTTGCCTTCTGCTACTGGGATTGGTGGGCGTGGCAAGGACGACGGTAAGTGACCCAG----------TTGGGCATTGATATGT--------------AGGA-T--T----AATT--C-ATTGATCGTG------ACTTTGCAGAAATTTTATACAC---------CACAAGCTGATCGACTGCCCGTCAACTTGTACTACGA
droBia1	scf7180000302075:5048236-5048399 +		GCGCCTTTGTGTGCCTGCTGCTGCTGGGCTGGGTGGGCGTGGCCCTGCCAAGGGTAAGTGAACCCG----------TTGCACAA---------CGAT------TC-CGAA-T--GGCGACGAT--C-GCTGATCATG------ACTTTGCAGCGGCTGCGAGGGC---------CGCAGGCTGACCGACTGGCGGTTACCCTGTACTACGA
droTak1	scf7180000415765:1434130-1434286 -		TTGTCTTTGTCTGCCTGCTG---CTGGGATGGGTGGGCGTGGCCACGCCCAGGGTAAGTGAACCAG----------TTGAACGA---------TGAT-----------GA-T--TCCAACGAT--T-AATGATCATG------AATTTCCAGCGACTGCGAGCAC---------CACAAACTGACCGACTGCCCATTACCCTGTACTATGA
droEle1	scf7180000491261:57827-57981 -		TTGCATTTGTGTGCCTGCTG---ATGGGACTGGTGGGCGTGGCCACGGCAAGGGTAAGTGACCCAG----------TTGACA----------------------C-CGAATT--TGCGACGAT--C-ATTGAATATG------ACTTTGCAGCGCCATAGTGGAC---------CGCAGACTGACAGACTGCCAGTTACCCTGTACTATGA
droRho1	scf7180000779659:527171-527332 -		TTGCCTTTGTCTGCCTGCTG---CTGGGATTTGTGGGTGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGGTGCC--G-----AACAA------TC-ATAG-A----CAATGAT--CAATGGATCATG------ACATTGCAGCGACACAGAGTAG---------CGCAGACTGACAGACTGCCGGTTACCCTGTACTACGA
droFic1	scf7180000453906:309346-309499 -		TCATCTTTGTCTGCCTTCTT---CTGGGATGGGTGGGCGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGGAG----------------------C-CCCA-T--CGCGGCGAT--C-ACTGAACGCG------ACTTTGCAGCGTCATCGAGGCC---------AGCAGACTGACAGACTGCCAGTTACCCTGTACTACGA
droKik1	scf7180000302639:3075378-3075539 -		TTGTCTTTGTCTGCCTTCTGATGATGGGATTGATGGGCGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGAGCTT---------TGAT------TC-CGAA-T--TATGACGAT--C-ATTGGGGAT--------ATTTGCAGCGTCATCATAAAG---------CTCAGAGTAACAGACTCCCGGTCGCGCTTTACTACGA
droAna3	scaffold_13340:20027314-20027477 -		TCCTCTATGTCTGCCTGATGATTCTGGGCTTAGTAGGCGTGGCTACGGCTAAGGTGGGTGTCCCAGATTGTTTTATTTGGAA---------------------T-CTAAA-T---GCA-------T-ATTGATATTA-ACGGCACCTGACAGCGT---CGAGGAC---------CAGTTCGAGACAAGCTCCCAGTTACACTGTACTACGA
droBip1	scf7180000396413:2366204-2366370 +		TCCTCAATGTCTGCCTGCTGATGCTGGGGTTTGTAGCCGTGGCCACTGCTAAGGTAAGTGTCCCAA----------TTGAATTG--TTTTGGATGAT------TT-GGAA-T--T-CATATCA--CAATTAA-CGGC------ATCTAACAGCGT---CGTGGAC---------CAGTGCGTGACAAGCTGCCAGTGACACTGTACTACGA
dp5	2:3006492-3006671 +		TTGTCTTTGTCTGTCTACTG---ATGTGCATTATGGCGCTGGCCAGTGCGAGGGTGAGTGACATTGCTCCCTCCAGTTCAGGGG--A-----C--AACAGCGAT-CTAAA-ACA-----AGAA--C-A----TTGTGA-----ATTTTGCAGCGTCATCATGCTCGAGAGACAGAGGAGAGTGACAAACTGGCCGTAACACTGTACTACGA
droPer2	scaffold_7:1342813-1342992 -		TTGTCTTTGTCTGTCTACTG---ATGTGCATTATGGCGCTGGCCAGTGCGAGGGTGAGTGACATTGCTCCCTCCAGTTCAGGGG--A-----C--AACAGCGAT-CTAAA-ACA-----AGAA--C-A----TTGTGA-----ATTTTGCAGCGTCATCATGCACGAGAGACAGAGGAGAGTGACAAACTGGCCGTAACACTGTACTACGA
droWil2	scf2_1100000004943:5568537-5568560 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCCGATTACCCTGTACTACGA
droVir3	scaffold_12822:2237941-2237999 +	dvi_2590	AT-----------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGCGTAATCATGATC---------CCGACGCGCCCAAGCTGCCCATAACACTCTACTACGA
droMoj3	scaffold_6540:10957331-10957353 -		C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCATTACGCTCTATTATGA
droGri2	scaffold_14624:3174743-3174790 +		GCAA----------------------------------------------------------------------------------------------------------------------------------------------------AATCATCGA---------------GATAATCCAAAGCTGCCCATTACTTTATACTACGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CTGTCTTTGTGTGTCTGCTG---CTGGGATTGGTGGGCGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGAGCGG--A-----CTGAA------TC-CGAA-T--TGCGACGCT--CGATTGATCGTG------ACTTTGCAGCGTATGCGAGGTC---------CGCAAGCTGACCGACTGGCGATCACCCTGTACTACGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis
.....................................................GTAAGTGACCCAG----------TTGAGC.................................................................................................................................	19	1	18.00	18	12	2	4	0	0	0	0	0	0	0	0	0	0	0
.....................................................GTAAGTGACCCAG----------TTGAGCG................................................................................................................................	20	1	16.00	16	1	0	0	0	0	1	1	0	0	1	1	11	0	0
..........................................................TGACCCAG----------TTGAGCGG--A-----C......................................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................GTAAGTGACCCAG----------TTGAG..................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................ATGCGAGGTC---------CGCAAGCTG............................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.........................................................GTGACCCAG----------TTGAGCGG--A-----CTGAA------TC-.........................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GTAAGTGACCCAG----------TTGAGCGG--A-----C......................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................TGACCCAG----------TTGAGCGG--A-----CT.....................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AGCTGACCGACTGGCGATC..............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................GTAAGTGACCCAG----------TTGAGCGG--A-----.......................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................A-----CTGAA------TC-CGAA-T--TGCGACG..........................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................G---CTGGGATTGGTGGGCGT...........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.............................................................................................TGAA------TC-CGAA-T--TGCGACGCT--C.....................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................GACCGACTGGCGATCACCC..........	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TGAA------TC-CGAA-T--TGCGACGCT--CGAT..................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................C---------CGCAAGCTGACCGACTG....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CGACTGGCGATCACC...........	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CTGTCTTTGTGTGTCTGCTG---CTGGGATGGGTGAGCGTGGCCACGCTAAGGGTAAGTGACCCAG----------TTGAGCGG--A-----CTGAA------TC-CGAA-T--TGCGACGCT--CGATTGATCGTG------ACTTTGCAGCGTTTGCGAGGTC---------CGCAAGCTGACCGACTGGCGATCACCCTGTACTACGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................GTAAGTGACCCAG----------TTGAGCG................................................................................................................................	20	1	220.00	220	17	115	12	76
.....................................................GTAAGTGACCCAG----------TTGAGC.................................................................................................................................	19	1	20.00	20	3	1	2	14
......................................................TAAGTGACCCAG----------TTGAGCG................................................................................................................................	19	1	3.00	3	3	0	0	0
.....................................................GTAAGTGACCCAG----------TTGAG..................................................................................................................................	18	1	3.00	3	0	0	1	2
.........................................................................................................................CT--CGATTGATCGTG------ACTTTGCAG...........................................................	23	1	2.00	2	0	1	0	1
.........................................................................................................................CT--CGATTGATCGTG------ACTTTGCA............................................................	22	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................CGACTGGCGATCACCCTGTACTA...	23	1	1.00	1	1	0	0	0
......TTGTGTGTCTGCTG---CTGGGATG....................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
......................................................................................................................................................AGCGTTTGCGAGGTC---------CGCAAG...............................	21	1	1.00	1	0	1	0	0
.......................................................AAGTGACCCAG----------TTGAGCG................................................................................................................................	18	1	1.00	1	1	0	0	0
..........GTGTCTGCTG---CTGGGATGGGTGAGC.............................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..............................................................................................GAA------TC-CGAA-T--TGCGACGCT--CGATTGAT..............................................................................	27	1	1.00	1	1	0	0	0
.......TGTGTGTCTGCTG---CTGGGAT.....................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................GATGGGTGAGCGTGGCCAC.....................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........................................................................................................................CT--CGATTGATCGTG------ACTTTG..............................................................	20	1	1.00	1	0	1	0	0
................GCTG---CTGGGATGGGTGAG..............................................................................................................................................................................	18	1	1.00	1	0	1	0	0
..........GTGTCTGCTG---CTGGGATGG...................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........................................................................................................................CT--CGATTGATCGTG------ACTTTGC.............................................................	21	1	1.00	1	0	1	0	0
.......................CTGGGATGGGTGAGCGTGGCCACG....................................................................................................................................................................	24	1	1.00	1	0	0	1	0
...................................................................................................................GCGACGCT--CGATTGATCG............................................................................	18	1	1.00	1	0	0	1	0

droEre2

CGGTTTTTGTGTGTCTGCTG---CTGGGATGGGTGGGCGTGGCCATGCCAAGGGTAAGTGACCCAG----------TTGTGGGG---------TGAA------TC-CGAG-T-------------C-GTTGATCGTG------ACATTGCAGCGGCTGCGTGGAG---------CGCAAGCTGACCGACTGGCAATCACCCTGTACTACGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head
.......................CTGGGATGGGTGGGCGTGG.........................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0
........................TGGGATGGGTGGGCGTGGCCATGCCAAG...............................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
.......................CTGGGATGGGTGGGCGTGGC........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...TTTTTGTGTGTCTGCTG---CTGGG.......................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droYak3

CTGTCTTTGTCTGTCTGCTG---CTGGGATGGGTGGGCGTGGCTGCGCCAAGGGTAAGTGACCCAA----------TTGAGCGA---------TGAA------TC-CGCA-T--TGCGACGCT--C-GCTGATCGTG------ACATTGCAGCGTCTGCTTGGAC---------CGCAAACTGACCGACTGGCCATCACCCTGTACTACGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body
...................G---CTGGGATGGGTGGGCGTGGCTGCGC...................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...............TGCTG---CTGGGATGGGTGGGC.............................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1
...........................GATGGGTGGGCGTGGCTGCGC...................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1

droEug1

T-ATCAATGTTTGCCTTCTGCTACTGGGATTGGTGGGCGTGGCAAGGACGACGGTAAGTGACCCAG----------TTGGGCATTGATATGT--------------AGGA-T--T----AATT--C-ATTGATCGTG------ACTTTGCAGAAATTTTATACAC---------CACAAGCTGATCGACTGCCCGTCAACTTGTACTACGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCGCCTTTGTGTGCCTGCTGCTGCTGGGCTGGGTGGGCGTGGCCCTGCCAAGGGTAAGTGAACCCG----------TTGCACAA---------CGAT------TC-CGAA-T--GGCGACGAT--C-GCTGATCATG------ACTTTGCAGCGGCTGCGAGGGC---------CGCAGGCTGACCGACTGGCGGTTACCCTGTACTACGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTGTCTTTGTCTGCCTGCTG---CTGGGATGGGTGGGCGTGGCCACGCCCAGGGTAAGTGAACCAG----------TTGAACGA---------TGAT-----------GA-T--TCCAACGAT--T-AATGATCATG------AATTTCCAGCGACTGCGAGCAC---------CACAAACTGACCGACTGCCCATTACCCTGTACTATGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTGCATTTGTGTGCCTGCTG---ATGGGACTGGTGGGCGTGGCCACGGCAAGGGTAAGTGACCCAG----------TTGACA----------------------C-CGAATT--TGCGACGAT--C-ATTGAATATG------ACTTTGCAGCGCCATAGTGGAC---------CGCAGACTGACAGACTGCCAGTTACCCTGTACTATGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGCCTTTGTCTGCCTGCTG---CTGGGATTTGTGGGTGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGGTGCC--G-----AACAA------TC-ATAG-A----CAATGAT--CAATGGATCATG------ACATTGCAGCGACACAGAGTAG---------CGCAGACTGACAGACTGCCGGTTACCCTGTACTACGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCATCTTTGTCTGCCTTCTT---CTGGGATGGGTGGGCGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGGAG----------------------C-CCCA-T--CGCGGCGAT--C-ACTGAACGCG------ACTTTGCAGCGTCATCGAGGCC---------AGCAGACTGACAGACTGCCAGTTACCCTGTACTACGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGTCTTTGTCTGCCTTCTGATGATGGGATTGATGGGCGTGGCCACGCCAAGGGTAAGTGACCCAG----------TTGAGCTT---------TGAT------TC-CGAA-T--TATGACGAT--C-ATTGGGGAT--------ATTTGCAGCGTCATCATAAAG---------CTCAGAGTAACAGACTCCCGGTCGCGCTTTACTACGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCTCTATGTCTGCCTGATGATTCTGGGCTTAGTAGGCGTGGCTACGGCTAAGGTGGGTGTCCCAGATTGTTTTATTTGGAA---------------------T-CTAAA-T---GCA-------T-ATTGATATTA-ACGGCACCTGACAGCGT---CGAGGAC---------CAGTTCGAGACAAGCTCCCAGTTACACTGTACTACGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TCCTCAATGTCTGCCTGCTGATGCTGGGGTTTGTAGCCGTGGCCACTGCTAAGGTAAGTGTCCCAA----------TTGAATTG--TTTTGGATGAT------TT-GGAA-T--T-CATATCA--CAATTAA-CGGC------ATCTAACAGCGT---CGTGGAC---------CAGTGCGTGACAAGCTGCCAGTGACACTGTACTACGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTGTCTTTGTCTGTCTACTG---ATGTGCATTATGGCGCTGGCCAGTGCGAGGGTGAGTGACATTGCTCCCTCCAGTTCAGGGG--A-----C--AACAGCGAT-CTAAA-ACA-----AGAA--C-A----TTGTGA-----ATTTTGCAGCGTCATCATGCTCGAGAGACAGAGGAGAGTGACAAACTGGCCGTAACACTGTACTACGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....TTTGTCTGTCTACTG---ATGTGC......................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................AGAGGAGAGTGACAAACTGGCC.................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTGTCTTTGTCTGTCTACTG---ATGTGCATTATGGCGCTGGCCAGTGCGAGGGTGAGTGACATTGCTCCCTCCAGTTCAGGGG--A-----C--AACAGCGAT-CTAAA-ACA-----AGAA--C-A----TTGTGA-----ATTTTGCAGCGTCATCATGCACGAGAGACAGAGGAGAGTGACAAACTGGCCGTAACACTGTACTACGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................ATGTGCATTATGGCGCTGGCCAGTG...................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0

droWil2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCCGATTACCCTGTACTACGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AT-----------------------------------------------------------------------------------------------------------------------------------------------TTTGCAGCGTAATCATGATC---------CCGACGCGCCCAAGCTGCCCATAACACTCTACTACGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body
..................................................................................................................................................................ATC---------CCGACGCGCCCAAGCTGCCCATAAC............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCATTACGCTCTATTATGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GCAA----------------------------------------------------------------------------------------------------------------------------------------------------AATCATCGA---------------GATAATCCAAAGCTGCCCATTACTTTATACTACGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_12251

3r:19054998-19055061 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads