ID:

dsi_12236

 Coordinate:

3l:22213726-22213876 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.0 -13.5 -13.4 -13.4

Flybase annnotation

exon [3l_22213877_22214200_-]; CDS [3l_22213877_22214200_-]; exon [3l_22213609_22213725_-]; CDS [3l_22213609_22213725_-]; intron [3l_22213726_22213876_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGGTGCATGGCACAAAGGTGAGTTCTAATCAAACGTTTTGCTCATGTGCATGTAGTTCTTTTACACTAAAACCCACTAACTGACGATTGCTTTGCTTCACTGCTCCGCCTGCTCCTTTCCTCCCATGACTCCGTTACTCCTCCATGTTGTACACATTACACCCACCAGCTGCATTTGGAACAGACGGACAAGAGCGAGGGCAACGAAGCCGCTAGGGA
**************************************************....................(((.....(((..((((((.....((((...........((((.((....((............((.......))...........))....)).))))...........))))...))))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................................TTGGAACAGACGGACAAGAGCGAGGG.................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGACGGACCAGAGCGA..................... 16 1 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0
...................................................................................TGTAGTTCTTTTACACTA...................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................CTTTTACACTAAAACCCACTA............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................CAGCTGCATTTGGAACAGACGGACAAGA......................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................ATTTGGAACAGACGGACAAGAGC....................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGACGGACAAGAGCGAGGGCAACGA............ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................GAACAGACGGACAAGAGC....................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................AACGAAGCCGCTAGG.. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGACGGACCAGAGCGAAAGC................. 20 3 10 0.60 6 2 0 0 0 0 0 0 0 4 0 0
.......................................................................................................................................................................................................................GACGGACCAGAGCGA..................... 15 1 10 0.50 5 3 0 0 0 0 0 0 0 2 0 0
...............................................................................................................................................................................................................................AGAGCGAGGGCAACGA............ 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGACGGACCAGAGCG...................... 15 1 8 0.50 4 3 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................AGACGGACCAGAGCGAA.................... 17 2 18 0.39 7 6 0 0 0 0 0 0 0 1 0 0
..............................................................................................................AACTGACTATTGCTTT............................................................................................................................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCTGGAACACACCGACAAG.......................... 19 3 20 0.30 6 4 0 0 0 1 0 0 0 1 0 0
............................................................................ATGTGGATGACGTTCTTTTA........................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................GCGAGGGCAATGATGCCG....... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AACAGATGGACAAGA......................... 15 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................TAGAACAGCCGGACAAGA......................... 18 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
......................................................ATTCTAATCAAACGT...................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGTTCGACACACGGGTCCGGGTCGTCCGGTACTTCCACGTACCGTGTTTCCACTCAAGATTAGTTTGCAAAACGAGTACACGTACATCAAGAAAATGTGATTTTGGGTGATTGACTGCTAACGAAACGAAGTGACGAGGCGGACGAGGAAAGGAGGGTACTGAGGCAATGAGGAGGTACAACATGTGTAATGTGGGTGGTCGACGTAAACCTTGTCTGCCTGTTCTCGCTCCCGTTGCTTCGGCGATCCCT
**************************************************....................(((.....(((..((((((.....((((...........((((.((....((............((.......))...........))....)).))))...........))))...))))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................................................................................................................................AGACCTTGTGTGGCTGTTC.......................... 19 3 20 1.70 34 27 0 5 2 0
....................................................................................................................................GACGAGTCGGACGAGTAAAGG.................................................................................................. 21 2 2 0.50 1 0 1 0 0 0
...................................................................................................AGTTTGGGTAATTGACT....................................................................................................................................... 17 2 19 0.11 2 2 0 0 0 0
......................................................................................TCAAGAACATGTGATC..................................................................................................................................................... 16 2 20 0.10 2 0 0 0 1 1
................................................................................................................................................................................................................ACCTTGTGTGGCTGTTC.......................... 17 2 18 0.06 1 0 0 0 1 0
.................................................................................................TGATGTTGGGTGATGGAGT....................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
....................................................................................................................................................AAAGGAGGCTACTGA........................................................................................ 15 1 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:22213676-22213926 - dsi_12236 ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGGTGCATGGCACAAAGGTGAGTT----CTAATCA----AAC------GTT-----------------------TTGCTCA--TGTGCATGTAGTTC--------------------------------------------------------------------------TTTTACACT---------------AA------AACCCACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CCGCCTGCTCCTTTCC-TCCCATGACTCCG--------------------------------------TTACTC---CTCCATG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGAACAG------ACGGACAAGAG---CGAGGGCAACGAAGCCGCTAG------------------------GGA
droSec2 scaffold_11:2630130-2630380 - ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGGTGCATGGCACAAAGGTGAGTT----CAAATCA----ACC------GTT-----------------------TTGTTCA--TGTGCATGTAGTTA--------------------------------------------------------------------------TTTTACACT---------------AA------AACCCACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CCGCCTGCTCCTTTCC-TCCCATGACTCCG--------------------------------------TTACTC---CTCCATG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGAACAG------ACGGACAAGAG---CGAGGGCAACGAAGCCGCTAG------------------------GGA
dm3 chr3L:22709465-22709718 - ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGACGCACGGCACAAAGGTGAGTT----CAAATCA----AAC------GTT-----------------------TTGTTCA--TGCGCATGTACTTT---------------------------------------------------------TC---------------TCTTACACT---------------AA------AACCAACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CCGCCTGCTCCTTTCCTTCCCATGACTCTG--------------------------------------TTCCTC---CTCCATG---TT--GT--AT----A--------------------CTTTGCACC------C--------------------ACCAGCTGCAT---TTGGAACAG------ACGGACAAGAG---CGAGGGCAACGAAGCCGCTAG------------------------GGA
droEre2 scaffold_4784:22361303-22361556 - ACAAGCTGAGTGCTCAGGCCCAGCAGGCCATGAAGGTGCATGGCACAAAGGTGAGTC----CATTACA----GCC------GTT-----------------------GTGTTTA--TGTGCATGTAGTTA--------------------------------------------------------------------------TTTTACATT---------------AA------AGCCCACTA---ACTGACAATTGCTT-TGCTTGAATGCT---------------TTGCCTGCTCCTTTCC-TCCCCTGATTCCG--------------------------------------CTTTTC---CTCCATG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGAGCAG------ACGGACAAGGGCAACGAGGGCAACGAAGCCGCTAA------------------------GGA
droYak3 3L:23196323-23196571 - ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGGTGCACGGCACAAAGGTGAGAT----TAAACCA----CAC------GTT-----------------------GTGTTTA--TGTGCATGTAGTTT--------------------------------------------------------------------------TTTTACACT---------------TA------AGCCCACTA---ACTGATAATTGCTT-TGCTTTAATGCT---------------CTGCCCGCTCGTTCCC-GCCCCTGAC--CG--------------------------------------TTCCTC---CTCCTTG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGATCAG------ACGGACAAGAA---CGAGGGCAACGAAGCCGCTAA------------------------AGA
droEug1 scf7180000409801:289870-290120 - ATAAGTTGAGCGCCCAGGCTCAGCAGGCCATGAAGGTGCATGGAACGAAGGTGAGTT----CAGAGCA----T-C------GAT-----------------------TGACTTGCTACTGCCTGTAGTTC--------------------------------------------------------------------------TGTTAAACTA---------------A------A-CCACCTA---ACCAAATT-----T-TGCTTCACTGCT---------------CTGCCTGCTC---CCC-ACTCCTGATTTCA--------------------------------------TTCCTG---CTCCATG---TC--AC--ACTC--ACGCC----AA-CCA----------ATCTG-------------------------CAACCAGCTGCAC---CTGGAGCAG------ACGGATAAAAG---CGAGGGCAACGAGGTCGCCAA------------------------GGA
droBia1 scf7180000302377:518281-518532 + ACAAGCTGAGCGCCCAGGCCCAGCAGGCGATGAAGGTACACGGAACGAAGGTGAGTT----CCAAACC----CCC------GGC-----------------------TTGTTTGTTTCTGCCTGTAGTTT--------------------------------------------------------------------------TCTGACACTT---------------A------A-CCTACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CTGCCTGCTC---CCC-ACTCCTGACACCA--------------------------------------TTCTTGTTCCTCCCTA---AT--CC--AC----A--------------------CGCCACTCC------C--------------------ATCAGCTGCAT---CTGGAGCAG------ACGGACAAGAG---TGAGGGCAACGAAGCCGCCAA------------------------GGA
droTak1 scf7180000415270:64010-64255 - ATAAGCTGAGTGCCCAGGCCCAGCAGGCCATGAAGGTGCATGGAACGAAGGTGAGTC----TAGGTCA----CCC------GGT-----------------------TGGTTTGTTACTGCCTGTAGTTC-----------------------------------------------------------------TTTT-----CGTTACACT---------------AA------AACCTCCTA---AC-----TTTGCTT-TG--------CT---------------CTGCCTGCTT---TCC-AACCCTGACTCCC--------------------------------------TTCCTC---TTCCACG---AA--AT--AC----AC--ACAAAAAACCG----------A-----------------------------AAACCAGCTGCAT---CTGGAGCAG------ACGGACAAGAG---CGAGGGCAACGAGGCCGCCAA------------------------GGA
droEle1 scf7180000491033:201205-201461 + ATAAGTTGAGCGCCCAGGCCCAACAGGCAATGAAGATACACGGCACGAAGGTGAGTCAGTCCACAGCACCCGTGTGC------TGT-----------G---------TTGTTTGTTATTGCCTGCAGTTC--------------------------------------------------------------------------TGTTACACTA---------------A------A-CCTCCTA---ACCGACATTTGCAT-TGCCCCACTTGT---------------CTGCCTGCTG--------CTCCC------A--------------------------------------ATTCAC---CTCCTTG---CT--CC--GC----A--------------------CACCATACC------CA--------T-----AACCAATCAGCTGCAT---CTGGAGCAG------ACGGACAAGAG---CGAGGGCAACGAGGCCGCCAA------------------------AGA
droRho1 scf7180000767403:27963-28209 + ACAAGCTGAGTGCCCAGGCCCAGCAGGCCATGAAGATACACGGCACGAAGGTGAGTC----CGCAGCA----CTC------GCA-----------------------TTGTTTGTTATTGCCTGTAGTTC--------------------------------------------------------------------------GATTACACCT---------------A------A-CCTCATA---ACTGACATT----T-TGCTTCACTGCT---------------CTGCCTGCCT---CCC-ACTCCCAATTCCC------------------A-------------------CTCCAA---CTCCTTG---CC--AA--AC----A--------------------CACCACACC------T-------------------AACCAGCTGCAT---CTGGAGCAA------ACGGACAAGAG---CGAGGGCAACGAGGTCGCCAA------------------------GGA
droFic1 scf7180000453830:313628-313879 + ACAAGCTGAGCGCCCAAGCCCAGCAGGCCATGAAAGTGCACGGCACGAAGGTAGGTC----ATGAGCA----CCA------GTT-----------------------CCGTTTTTTGATGCCTGTAGTTA--------------------------------------------------------------------------TGTTACACTA---------------A------C-CCACCTT---ACTGACATTTGCTT-TGCTTCACTGCC---------------CTGCCTGTCC---CCC-ACTCCTGATCCAA------------------A-------------------AAAAAA--CACCTAAA---AC--CC--GT----G--------------------CGCCACACC------C-------------------AAACAGCTGCAC---TTGGAGCAG------ACGGACAGGAG---CGAGGGCAACGAGGCCGCCAA------------------------GGA
droKik1 scf7180000299918:107456-107778 - ACAAGCTGGTAGCTCAGGCCCAGCAGGCCATGAAGGTGCACAGCAACAAGGTGAGCT----TTGTAT---TCTTCT-TATTGTAT-GTCT-----------------------------------------------GAAAAAGGGATACAAAAATGATGAAGTTGAGTTACCCGTTACATACTTATGCTCTTGCATGGAGATCTAT-AGACCG---------------A------A-CAACTTA---ATTAACATTTGCTT-TGCTGCCCCGACTTCTGCTTACCCAACCTGCTTGCCA---CCC-ACTCCTGATTTCC------------------AATCTCCAATTCGA--------CCCC---CGCCATG---TC--CA--AT----A--------------------CA---------------------------------ATACAGCTGCAT---CTGGAGCAT------TTAGACAAGAG---CGAAGGCAACGAGGCCGCCAA------------------------GGA
droAna3 scaffold_13337:22460822-22461081 - ACAAACTAAGCAGCCAGGCCCAACAAGCTATAAAGGTTCACGGCACCAAGGTTAGTT----AATAAAT--CCCCC------GTT-----------------------TCAATGGATTCCGCTTGTT------------------------------------------------------------------------------TTTGACACCA---------------A--------TCCAATA---ATAAAAATTTGCTTCCGCTTTCCTGGCTCCC-------------GCTTACTATTACCC-ACCTATGATTTCC-----GCTCCCAC--------------------------------G----CCCACCTTT--CC--AC----------TCTCAAACG----------CCTCC-------------------------AACACAGCTGCAT---CTGGAGCAG------TCGGAGAAAAG---CGAGGGTAATGAGTCTGCCAA------------------------GGA
droBip1 scf7180000396426:379141-379396 + ACAAATTAAGCAGCCAGGCCCAGCAAGCAATAAAGGTGCACGGCACCAAGGTAAGTT----ACC--------CCC------GAT-----------------------TCGATGGGTTCTGCTTGTTCT----------------------------------------------------------------------------TTTGACACCG---------------A------T--CCAACA---TTAAACATTTGCTTCCGCTTTCCCGGCTCCC-------------GCGTTCTATTGTTC-ACCTTTGATTTCC-----ACTCCCAT--------------------------------C----TCCGAATTTT--C--AC----------TCTCAAACG----------TCTCC-------------------------AATACAGCTGCAT---CTGGAGCAG------TCGGAGAAAAG---CGAAGGTAATGAGTCCGCCAA------------------------GGA
dp5 XR_group8:390577-390870 - ACAAGCTTAGTGCCCAGGCCCAGCAGGCCATGAAGGTGCACGGAACCAAGGTGAGTT----CCCACT---TCCAC------GTCT-GGCTCTGACAAT---------TTGTTATTTGTTGCCTGGAGTTT--------------------------------------------------------------------------CTTGACACTG---------------T------C-ACACCTG---ATTAACATTTGCTTTTGCTAACATGCCGTGCGCTTT---------------T---CCG-AACTACGATTCCGATTCCGATCCCAATCCC-AAT--------CGACAT---------------ACCG---CC--AC--AC----A----CCCAAAACCG----------ACACC-------------------------AACACAGCTGCATCTTCTGGAGCCG---GCGGTCGACAAGAG---CGAGGGCAACGAGGCTGCCAA------------------------GGA
droPer2 scaffold_96:85765-86058 + ACAAGCTTAGTGCCCAGGCCCAGCAGGCCATGAAGGTGCACGGAACCAAGGTGAGTT----CCCAGT---TCCAC------GTCT-GGCTCTGACAAT---------TTGTTATTTGTTGCCTGGAGTTT--------------------------------------------------------------------------CTTGACACTG---------------T------C-ACACCTG---ATTAACATTTGCTTTTGCTAACATGCCGTGCGCTTT---------------T---CCG-AACTACGATTCCGATCCCAATCCCAATCCC-AAT--------CGACAT---------------ACCG---CC--AC--AC----A----CCCAAAACCG----------ACACC-------------------------AACACAGCTGCATCTTCTGGAGCCG---GCGGTCGACAAGAG---CGAGGGCAACGAGGCTGCCAA------------------------GGA
droWil2 scf2_1100000004511:6991147-6991478 + dwi_630 ACAAATTGACGGCACAGGCTCAGCAGGTGATGAAAATTCATGGAACTAAGGTGAGTT----TGGAAT---CCTTT------TTTTCGTTTCT------TTTCTTTTG---TTT-TGGTTTCGT-----TTTGTTTTATTAATAATGCTTTAAAAATGAGAGAA----------------------------------------------TTCTG---------------TTATGTTTAATTAACA---ACAAATACTTTT-TCTGCTTGTATTGCTTGTGTTGT-----------------------------------------------------T--------------TA-TAT-----GCCACACCCACAATATA--T--AC----------ACACAAACGCAC-----ACACACACACACAC-ACACATGTGTCCACCTGGCTGCAGTTGCAT---TTGGATCAACAATCGACGGACAAATC---AGAGGGCAATGATTTGTCCAAAA---------CGGA---T---GAGGA
droVir3 scaffold_13049:17021941-17022223 + ACAAGCTGGCGGCGCAGGCACAGCAGGCGATGAAGGTCTATGGCACCAAGGTGAGCA----TCTGGCC-GCGTTTGC------TGCGCTC-----------------CTGTTGTTTCTTGTTGGGATTTT---------------------------------------------------------------------------GTGCTA--GTACGATTTAACCCTGA------AACCAACTAACACAAAACATTTGCCG-TT-----CTCGCTTGCGCTTT--------ACTTGTAT----------------CTTG------------T----T--------------TC-TCC-----A------------TTCCCAC--ACTCACAC--G----CA------C-----ACACACG---------------------------CAAAGCTGCAC---TTGGACCCG---GCGGCGGATAAGAG---CGAGGGCAATGATGCCGCCAGGG---------AGGACCAG---GAGGA
droMoj3 scaffold_6680:22008153-22008444 + ACAAGCTGGCGGCACTTGCTCAGCAGGCGATGAAGGTGCACGGCACCAAGGTAAGCA----GCTCGCT-GCCCTCT-TTTCGTTC-GCCTCT------TTGCTTT------------------------------------------------------------------------ATTTACTT-TGTTTACTCTTTGAGTTTGACTTTATTA--------AACACTGA------ATCCG-------ACTAACACTTGGTT-TGCTCT---CGCTTGCGCTTT--------ACTTG-------------TATGTATTTT-----GTT-------------------------C-TCT-----GTT----ACC--------GCACATTC--AC--A----CAA-----------ACACACG---------------------------TACAGCTACAC---TTGGACCCG---GCGGCGGATAAGAA---CGAGGGCAACGAGGCCGGCAGAG---------AGGACCAG---GAGGA
droGri2 scaffold_15110:15155026-15155324 - ATAAGCTATCGTCGCTCGCCCAGCAGGCAATGAAAGTGCATGGCACCAAGGTGAGCA----GCTGCCT-CCATTTACTTTTGTTT-GTCTTT------TTTTTTTCG---TTCT--TTTGTTTGGATTTT------------------------------------------------------------------------------ATGCT---------------TA------AAACTAACA---CAAAACATTTGCTG-TTCT-----CGCTTGCGCCT--------CGCTTGTGTCTTGT--------------------------------T--------------TA-TCT-----GTTTTATTCTG---TT--CC--AC----------TCACAAACC--AAAACATCAAATT---------------------------TAAAGCTGCAT---TTGGATCCA---ACCCTGGACAAGAG---CGAGGGAAATGATGCTGCCAAGGAGCTTTCGGAGGAGCAGGAGCAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGGTGCATGGCACAAAGGTGAGTT----CTAATCA----AAC------GTT-----------------------TTGCTCA--TGTGCATGTAGTTC--------------------------------------------------------------------------TTTTACACT---------------AA------AACCCACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CCGCCTGCTCCTTTCC-TCCCATGACTCCG--------------------------------------TTACTC---CTCCATG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGAACAG------ACGGACAAGAG---CGAGGGCAACGAAGCCGCTAG------------------------GGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACAG------ACGGACAAGAG---CGAGGG..........................................2612.00200000000000020000
..........................................................................................................................TGTAGTTC--------------------------------------------------------------------------TTTTACACT---------------A......................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.................................................................................................................................C--------------------------------------------------------------------------TTTTACACT---------------AA------AACCCACTA---...................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAT---TTGGAACAG------ACGGACAAGA....................................................2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TTGGAACAG------ACGGACAAGAG---C...............................................2311.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------ACGGACAAGAG---CGAGGGCAACGA....................................2511.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG------ACGGACAAGAG---C...............................................1811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAAGCCGCTAG------------------------G..1511.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG---CGAGGGCAACGA....................................1620.50100000000100000000
droSec2
ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGGTGCATGGCACAAAGGTGAGTT----CAAATCA----ACC------GTT-----------------------TTGTTCA--TGTGCATGTAGTTA--------------------------------------------------------------------------TTTTACACT---------------AA------AACCCACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CCGCCTGCTCCTTTCC-TCCCATGACTCCG--------------------------------------TTACTC---CTCCATG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGAACAG------ACGGACAAGAG---CGAGGGCAACGAAGCCGCTAG------------------------GGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------ACGGACAAGAG---CGAGGG..........................................2211.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------ACGGACAAGAG---CGAG............................................1911.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAG------ACGGACAAGAG---C...............................................1911.0010010
...........................................................................................................................................................................................................................................................GACGATTGCTT-TGCTTCACT...........................................................................................................................................................................................................................................................................2011.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAG---CGAGGGCAACGAAGC.................................2111.0010100
dm3
ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGACGCACGGCACAAAGGTGAGTT----CAAATCA----AAC------GTT-----------------------TTGTTCA--TGCGCATGTACTTT---------------------------------------------------------TC---------------TCTTACACT---------------AA------AACCAACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CCGCCTGCTCCTTTCCTTCCCATGACTCTG--------------------------------------TTCCTC---CTCCATG---TT--GT--AT----A--------------------CTTTGCACC------C--------------------ACCAGCTGCAT---TTGGAACAG------ACGGACAAGAG---CGAGGGCAACGAAGCCGCTAG------------------------GGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------ACGGACAAGAG---CGAGGGCAACGA....................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTGGAACAG------ACGGACAAGAG---CGAG............................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTGGAACAG------ACGGACAAGAG---CGA.............................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT---TTGGAACAG------ACGGACAAGAG---C...............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAG---CGAGGGCAACGAAGCCGCT.............................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------ACGGACAAGAG---CGAGGGCA........................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCTGTGTGCCCAGGCCCAGCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTGGAACAG------ACGGACAAGAG---CGAGG...........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................T--AT----A--------------------CTTTGCACC------C--------------------ACCAGC.....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT---TTGGAACAG------ACGGACAAGAG---CG..............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGCTGTGTGCCCAGGCCCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAG---CGAGGGCAACGAAGCCGCTA............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT---TTGGAACAG------ACGGACAAG.....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAT---TTGGAACAG------ACGGACAAGAG---................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TG---TT--GT--AT----A--------------------CTTTGCACC------C--------------------ACCAGC.....................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCAACGAAGCCGCTAG------------------------GG.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAG---CGAGGGCAACGAAGC.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------ACGGACAAGAG---CGAGGGCAAC......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CTCCATG---TT--GT--AT----A--------------------CTTTGCACC------C--------------------ACCAG......................................................................................2911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CGAGGGCAACGAAGCCGCTAG------------------------G..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCCAGCAGGCCATGAAGACGCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......TGTGTGCCCAGGCCCAGCAGGCCATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAG---CGAGGGCAACGAAGCC................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................................................................................................................................................................................TCCTTTCCTTCCCATGACTCTG--------------------------------------TTCC.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGCAGGCCATGAAGACGCACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGAG---CGAGGGCAACGAAGCCGCT.............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................CATGAAGACGCACGGCACAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTGGAACAG------ACGGACAAGAG---CG..............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------ACGGACAAGAG---CGAGGGCAACGA....................................2711.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------ACGGACAAGAG---CGAGGGCA........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CCATGAAGACGCACGGCACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CATGAAGACGCACGGCACAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACAAGAG---CGAGGGCAACGAAGCCGC..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------ACGGACAAGAG---CGAGG...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................ATGTACTTT---------------------------------------------------------TC---------------TCTTACACT---------------AA------AACCAAC........................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGCAGGCCATGAAGACGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------ACGGACAAGAG---CGAGGGCAACGAA...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------ACGGACAAGAG---CGAGGG..........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------ACGGACAAGAG---CGAGGGCAACGAAG..................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CGAGGGCAACGAAGCCGCTAG------------------------GG.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGGCCATGAAGACGCACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAG------ACGGACAAGAG---C...............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------ACGGACAAGAG---CGAGGGC.........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CGAGGGCAACGAAGCCGCTAG------------------------GGA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................ATGAAGACGCACGGCACAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------ACGGACAAGAG---CG..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..AAGCTGTGTGCCCAGGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAG------ACGGACAAGAG---................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................T----CAAATCA----AAC------GTT-----------------------TTGTTCA--TGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACAAGAG---CGAGGGCAACGA....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAT---TTGGAACAG------ACGGACAAGA....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......GTGTGCCCAGGCCCAGCAGGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TGACGATTGCTT-TGCTTCACTGCT---------------CC.......................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACAAGAG---CGAGGGCAACGAAGCC................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACAAGCTGAGTGCTCAGGCCCAGCAGGCCATGAAGGTGCATGGCACAAAGGTGAGTC----CATTACA----GCC------GTT-----------------------GTGTTTA--TGTGCATGTAGTTA--------------------------------------------------------------------------TTTTACATT---------------AA------AGCCCACTA---ACTGACAATTGCTT-TGCTTGAATGCT---------------TTGCCTGCTCCTTTCC-TCCCCTGATTCCG--------------------------------------CTTTTC---CTCCATG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGAGCAG------ACGGACAAGGGCAACGAGGGCAACGAAGCCGCTAA------------------------GGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------ACGGACAAGGGCAACGAGG...........................................2311.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------ACGGACAAGGGCAACGAGGGC.........................................2511.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAACGAGGGCAACGAAGCCG...............................2411.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TTGGAGCAG------ACGGACAAGGGC..................................................2311.0010100000
droYak3
ACAAGCTGTGTGCCCAGGCCCAGCAGGCCATGAAGGTGCACGGCACAAAGGTGAGAT----TAAACCA----CAC------GTT-----------------------GTGTTTA--TGTGCATGTAGTTT--------------------------------------------------------------------------TTTTACACT---------------TA------AGCCCACTA---ACTGATAATTGCTT-TGCTTTAATGCT---------------CTGCCCGCTCGTTCCC-GCCCCTGAC--CG--------------------------------------TTCCTC---CTCCTTG---TT--GT--AC----A--------------------CATTACACC------C--------------------ACCAGCTGCAT---TTGGATCAG------ACGGACAAGAA---CGAGGGCAACGAAGCCGCTAA------------------------AGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAG------ACGGACAAGAA---CGAGGG..........................................2313.00300000000003
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAG------ACGGACAAGAA---CGA.............................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAT---TTGGATCAG------ACGGA.........................................................2011.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CGAGGGCAACGAAGCCGCTAA------------------------AGA2611.00100100000000
droEug1
ATAAGTTGAGCGCCCAGGCTCAGCAGGCCATGAAGGTGCATGGAACGAAGGTGAGTT----CAGAGCA----T-C------GAT-----------------------TGACTTGCTACTGCCTGTAGTTC--------------------------------------------------------------------------TGTTAAACTA---------------A------A-CCACCTA---ACCAAATT-----T-TGCTTCACTGCT---------------CTGCCTGCTC---CCC-ACTCCTGATTTCA--------------------------------------TTCCTG---CTCCATG---TC--AC--ACTC--ACGCC----AA-CCA----------ATCTG-------------------------CAACCAGCTGCAC---CTGGAGCAG------ACGGATAAAAG---CGAGGGCAACGAGGTCGCCAA------------------------GGASizeHit CountTotal NormTotal
No Reads
droBia1
ACAAGCTGAGCGCCCAGGCCCAGCAGGCGATGAAGGTACACGGAACGAAGGTGAGTT----CCAAACC----CCC------GGC-----------------------TTGTTTGTTTCTGCCTGTAGTTT--------------------------------------------------------------------------TCTGACACTT---------------A------A-CCTACTA---ACTGACGATTGCTT-TGCTTCACTGCT---------------CTGCCTGCTC---CCC-ACTCCTGACACCA--------------------------------------TTCTTGTTCCTCCCTA---AT--CC--AC----A--------------------CGCCACTCC------C--------------------ATCAGCTGCAT---CTGGAGCAG------ACGGACAAGAG---TGAGGGCAACGAAGCCGCCAA------------------------GGASizeHit CountTotal NormTotal
No Reads
droTak1
ATAAGCTGAGTGCCCAGGCCCAGCAGGCCATGAAGGTGCATGGAACGAAGGTGAGTC----TAGGTCA----CCC------GGT-----------------------TGGTTTGTTACTGCCTGTAGTTC-----------------------------------------------------------------TTTT-----CGTTACACT---------------AA------AACCTCCTA---AC-----TTTGCTT-TG--------CT---------------CTGCCTGCTT---TCC-AACCCTGACTCCC--------------------------------------TTCCTC---TTCCACG---AA--AT--AC----AC--ACAAAAAACCG----------A-----------------------------AAACCAGCTGCAT---CTGGAGCAG------ACGGACAAGAG---CGAGGGCAACGAGGCCGCCAA------------------------GGASizeHit CountTotal NormTotal
No Reads
droEle1
ATAAGTTGAGCGCCCAGGCCCAACAGGCAATGAAGATACACGGCACGAAGGTGAGTCAGTCCACAGCACCCGTGTGC------TGT-----------G---------TTGTTTGTTATTGCCTGCAGTTC--------------------------------------------------------------------------TGTTACACTA---------------A------A-CCTCCTA---ACCGACATTTGCAT-TGCCCCACTTGT---------------CTGCCTGCTG--------CTCCC------A--------------------------------------ATTCAC---CTCCTTG---CT--CC--GC----A--------------------CACCATACC------CA--------T-----AACCAATCAGCTGCAT---CTGGAGCAG------ACGGACAAGAG---CGAGGGCAACGAGGCCGCCAA------------------------AGASizeHit CountTotal NormTotal
No Reads
droRho1
ACAAGCTGAGTGCCCAGGCCCAGCAGGCCATGAAGATACACGGCACGAAGGTGAGTC----CGCAGCA----CTC------GCA-----------------------TTGTTTGTTATTGCCTGTAGTTC--------------------------------------------------------------------------GATTACACCT---------------A------A-CCTCATA---ACTGACATT----T-TGCTTCACTGCT---------------CTGCCTGCCT---CCC-ACTCCCAATTCCC------------------A-------------------CTCCAA---CTCCTTG---CC--AA--AC----A--------------------CACCACACC------T-------------------AACCAGCTGCAT---CTGGAGCAA------ACGGACAAGAG---CGAGGGCAACGAGGTCGCCAA------------------------GGASizeHit CountTotal NormTotal
No Reads
droFic1
ACAAGCTGAGCGCCCAAGCCCAGCAGGCCATGAAAGTGCACGGCACGAAGGTAGGTC----ATGAGCA----CCA------GTT-----------------------CCGTTTTTTGATGCCTGTAGTTA--------------------------------------------------------------------------TGTTACACTA---------------A------C-CCACCTT---ACTGACATTTGCTT-TGCTTCACTGCC---------------CTGCCTGTCC---CCC-ACTCCTGATCCAA------------------A-------------------AAAAAA--CACCTAAA---AC--CC--GT----G--------------------CGCCACACC------C-------------------AAACAGCTGCAC---TTGGAGCAG------ACGGACAGGAG---CGAGGGCAACGAGGCCGCCAA------------------------GGASizeHit CountTotal NormTotal
No Reads
droKik1
ACAAGCTGGTAGCTCAGGCCCAGCAGGCCATGAAGGTGCACAGCAACAAGGTGAGCT----TTGTAT---TCTTCT-TATTGTAT-GTCT-----------------------------------------------GAAAAAGGGATACAAAAATGATGAAGTTGAGTTACCCGTTACATACTTATGCTCTTGCATGGAGATCTAT-AGACCG---------------A------A-CAACTTA---ATTAACATTTGCTT-TGCTGCCCCGACTTCTGCTTACCCAACCTGCTTGCCA---CCC-ACTCCTGATTTCC------------------AATCTCCAATTCGA--------CCCC---CGCCATG---TC--CA--AT----A--------------------CA---------------------------------ATACAGCTGCAT---CTGGAGCAT------TTAGACAAGAG---CGAAGGCAACGAGGCCGCCAA------------------------GGASizeHit CountTotal NormTotal
No Reads
droAna3
ACAAACTAAGCAGCCAGGCCCAACAAGCTATAAAGGTTCACGGCACCAAGGTTAGTT----AATAAAT--CCCCC------GTT-----------------------TCAATGGATTCCGCTTGTT------------------------------------------------------------------------------TTTGACACCA---------------A--------TCCAATA---ATAAAAATTTGCTTCCGCTTTCCTGGCTCCC-------------GCTTACTATTACCC-ACCTATGATTTCC-----GCTCCCAC--------------------------------G----CCCACCTTT--CC--AC----------TCTCAAACG----------CCTCC-------------------------AACACAGCTGCAT---CTGGAGCAG------TCGGAGAAAAG---CGAGGGTAATGAGTCTGCCAA------------------------GGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------TCGGAGAAAAG---CGAGG...........................................2111.001100000
.......................CAAGCTATAAAGGTTCACGGCACCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
droBip1
ACAAATTAAGCAGCCAGGCCCAGCAAGCAATAAAGGTGCACGGCACCAAGGTAAGTT----ACC--------CCC------GAT-----------------------TCGATGGGTTCTGCTTGTTCT----------------------------------------------------------------------------TTTGACACCG---------------A------T--CCAACA---TTAAACATTTGCTTCCGCTTTCCCGGCTCCC-------------GCGTTCTATTGTTC-ACCTTTGATTTCC-----ACTCCCAT--------------------------------C----TCCGAATTTT--C--AC----------TCTCAAACG----------TCTCC-------------------------AATACAGCTGCAT---CTGGAGCAG------TCGGAGAAAAG---CGAAGGTAATGAGTCCGCCAA------------------------GGASizeHit CountTotal NormTotal
No Reads
dp5
ACAAGCTTAGTGCCCAGGCCCAGCAGGCCATGAAGGTGCACGGAACCAAGGTGAGTT----CCCACT---TCCAC------GTCT-GGCTCTGACAAT---------TTGTTATTTGTTGCCTGGAGTTT--------------------------------------------------------------------------CTTGACACTG---------------T------C-ACACCTG---ATTAACATTTGCTTTTGCTAACATGCCGTGCGCTTT---------------T---CCG-AACTACGATTCCGATTCCGATCCCAATCCC-AAT--------CGACAT---------------ACCG---CC--AC--AC----A----CCCAAAACCG----------ACACC-------------------------AACACAGCTGCATCTTCTGGAGCCG---GCGGTCGACAAGAG---CGAGGGCAACGAGGCTGCCAA------------------------GGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..AAGCTTAGTGCCCAGGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
...................CCAGCAGGCCATGAAGGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
...............................................................................................AAT---------TTGTTATTTGTTGCCTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
droPer2
ACAAGCTTAGTGCCCAGGCCCAGCAGGCCATGAAGGTGCACGGAACCAAGGTGAGTT----CCCAGT---TCCAC------GTCT-GGCTCTGACAAT---------TTGTTATTTGTTGCCTGGAGTTT--------------------------------------------------------------------------CTTGACACTG---------------T------C-ACACCTG---ATTAACATTTGCTTTTGCTAACATGCCGTGCGCTTT---------------T---CCG-AACTACGATTCCGATCCCAATCCCAATCCC-AAT--------CGACAT---------------ACCG---CC--AC--AC----A----CCCAAAACCG----------ACACC-------------------------AACACAGCTGCATCTTCTGGAGCCG---GCGGTCGACAAGAG---CGAGGGCAACGAGGCTGCCAA------------------------GGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................CATGAAGGTGCACGGAACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droWil2
ACAAATTGACGGCACAGGCTCAGCAGGTGATGAAAATTCATGGAACTAAGGTGAGTT----TGGAAT---CCTTT------TTTTCGTTTCT------TTTCTTTTG---TTT-TGGTTTCGT-----TTTGTTTTATTAATAATGCTTTAAAAATGAGAGAA----------------------------------------------TTCTG---------------TTATGTTTAATTAACA---ACAAATACTTTT-TCTGCTTGTATTGCTTGTGTTGT-----------------------------------------------------T--------------TA-TAT-----GCCACACCCACAATATA--T--AC----------ACACAAACGCAC-----ACACACACACACAC-ACACATGTGTCCACCTGGCTGCAGTTGCAT---TTGGATCAACAATCGACGGACAAATC---AGAGGGCAATGATTTGTCCAAAA---------CGGA---T---GAGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..AAATTGACGGCACAGGCTCAGCAGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
....ATTGACGGCACAGGCTCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................AAAATTCATGGAACTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.................GCTCAGCAGGTGATGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGAGGGCAATGATTTGTC..............................1911.00100010
......TGACGGCACAGGCTCAGCAGGTGATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................AC----------ACACAAACGCAC-----ACACACACACACC................................................................................................................27200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGCAC-----ACACACACA....................................................................................................................18200.05101000
droVir3
ACAAGCTGGCGGCGCAGGCACAGCAGGCGATGAAGGTCTATGGCACCAAGGTGAGCA----TCTGGCC-GCGTTTGC------TGCGCTC-----------------CTGTTGTTTCTTGTTGGGATTTT---------------------------------------------------------------------------GTGCTA--GTACGATTTAACCCTGA------AACCAACTAACACAAAACATTTGCCG-TT-----CTCGCTTGCGCTTT--------ACTTGTAT----------------CTTG------------T----T--------------TC-TCC-----A------------TTCCCAC--ACTCACAC--G----CA------C-----ACACACG---------------------------CAAAGCTGCAC---TTGGACCCG---GCGGCGGATAAGAG---CGAGGGCAATGATGCCGCCAGGG---------AGGACCAG---GAGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................CGTTTGC------TGCGCTC-----------------CTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG---CGAGGGCAATGATGC.................................1811.001000000000100000000000000000000000000000000000000000000000000000
..................CACAGCAGGCGATGAAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAG---CGAGGGCAATGATGC.................................2211.001000000000000000000000000000000000000100000000000000000000000000
..............CAGGCACAGCAGGCGATGAAGGTCTATGGCACCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000000000000000010000000000
......................................................................CGTTTGC------TGCGCTC-----------------CTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTGTTGGGATTTT---------------------------------------------------------------------------GTGCTA--GTACGAT...............................................................................................................................................................................................................................................................................................................................2611.001000000001000000000000000000000000000000000000000000000000000000
..........GGCGCAGGCACAGCAGGCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGCA----TCTGGCC-GCGTTTGC------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCG---GCGGCGGATAAGAG---CGAG............................................2311.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGCCGCCAGGG---------AGG.............1911.001000000000000010000000000000000000000000000000000000000000000000
.................GCACAGCAGGCGATGAAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..............CAGGCACAGCAGGCGATGAAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGCCGCCAGGG---------AG..............1811.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CAC--ACTCACAC--G----CA------C-----ACACAC.......................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACAAGCTGGCGGCACTTGCTCAGCAGGCGATGAAGGTGCACGGCACCAAGGTAAGCA----GCTCGCT-GCCCTCT-TTTCGTTC-GCCTCT------TTGCTTT------------------------------------------------------------------------ATTTACTT-TGTTTACTCTTTGAGTTTGACTTTATTA--------AACACTGA------ATCCG-------ACTAACACTTGGTT-TGCTCT---CGCTTGCGCTTT--------ACTTG-------------TATGTATTTT-----GTT-------------------------C-TCT-----GTT----ACC--------GCACATTC--AC--A----CAA-----------ACACACG---------------------------TACAGCTACAC---TTGGACCCG---GCGGCGGATAAGAA---CGAGGGCAACGAGGCCGGCAGAG---------AGGACCAG---GAGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGAGGCCGGCAGAG---------A...............1911.001010000
droGri2
ATAAGCTATCGTCGCTCGCCCAGCAGGCAATGAAAGTGCATGGCACCAAGGTGAGCA----GCTGCCT-CCATTTACTTTTGTTT-GTCTTT------TTTTTTTCG---TTCT--TTTGTTTGGATTTT------------------------------------------------------------------------------ATGCT---------------TA------AAACTAACA---CAAAACATTTGCTG-TTCT-----CGCTTGCGCCT--------CGCTTGTGTCTTGT--------------------------------T--------------TA-TCT-----GTTTTATTCTG---TT--CC--AC----------TCACAAACC--AAAACATCAAATT---------------------------TAAAGCTGCAT---TTGGATCCA---ACCCTGGACAAGAG---CGAGGGAAATGATGCTGCCAAGGAGCTTTCGGAGGAGCAGGAGCAGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGAG---CGAGGGAAATGATGCTG...............................2511.00110

Generated: 05/18/2015 at 05:33 PM