ID:

dsi_1219

Coordinate:

3l:7421113-7421205 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7420341_7421446_+]; CDS [3l_7420341_7421446_+]

No Repeatable elements found

Sense Strand Reads

################################################################################################################################################################################################# AATTTCCACGTTTCCACAGATTCTGAGTCATTACCCTACTCGAAACTAGAGTCTCTTTCTCGGGAATCATCTCCCAAGCCATCGAGCTTCGGTTCATTTTCCACACACAGTTCACTTCGCCAGTCGGAATTTCCTAGCTTTAGTTCGCCAGATATTGGGTCATCTTCCTACTCCAGGCTGGAGCCCTTTTCCC ************************************************..((....((.(((((...(((.....((....(((((..((........))......))))).....)).....))).))))).))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries
..........................GTCATTACCCTACTCGAAA....................................................................................................................................................	19	0	1	1.00	1	1	0
...................................................................................................................................TCCTAGCATGAGTTCG..............................................	16	2	15	0.07	1	0	1
.............................................CTAGAGTCTCCTTCT.....................................................................................................................................	15	1	15	0.07	1	0	1
......................................................................................................................GCCAGTCGGAATTCCCA..........................................................	17	2	20	0.05	1	0	1

Anti-sense strand reads

TTAAAGGTGCAAAGGTGTCTAAGACTCAGTAATGGGATGAGCTTTGATCTCAGAGAAAGAGCCCTTAGTAGAGGGTTCGGTAGCTCGAAGCCAAGTAAAAGGTGTGTGTCAAGTGAAGCGGTCAGCCTTAAAGGATCGAAATCAAGCGGTCTATAACCCAGTAGAAGGATGAGGTCCGACCTCGGGAAAAGGG ************************************************..((....((.(((((...(((.....((....(((((..((........))......))))).....)).....))).))))).))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	GSM343915 embryo
.................................CGGATGAGCTTTGATCGC..............................................................................................................................................	18	2	3	0.67	2	2	0	0	0	0	0	0	0
.................................GGAGTGAGCTTTGATCGCA.............................................................................................................................................	19	3	10	0.30	3	0	3	0	0	0	0	0	0
...........................................................................................................GTCAACTGAAGCGGTCCG....................................................................	18	2	4	0.25	1	0	0	1	0	0	0	0	0
.....................................................................................................GTGTGTGTCAAGTGACGAGGTG......................................................................	22	3	4	0.25	1	0	0	0	1	0	0	0	0
................................CGGAATGAGCTTTGATCGC..............................................................................................................................................	19	3	10	0.10	1	0	0	0	0	0	0	1	0
..................................................................................GTTCGAAGCCAAGTGA...............................................................................................	16	2	20	0.10	2	0	0	0	0	2	0	0	0
.............................................................CCCTTAGTCGAGGGTT....................................................................................................................	16	1	11	0.09	1	0	0	0	0	1	0	0	0
.......................................AGCATTGATCTAAGAGA.........................................................................................................................................	17	2	13	0.08	1	0	0	0	0	0	1	0	0
......................................................................................................................................................................GGATGAAGTCCCAACTCGG........	19	3	14	0.07	1	0	0	0	0	0	1	0	0
...............TGTCTAGGACTCCGCAATG...............................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	0	0	1

Generated: 04/24/2015 at 08:53 AM