ID:

dsi_12179

 Coordinate:

3r:4213081-4213230 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.6 -22.4 -22.2

Flybase annnotation

CDS [3r_4213058_4213080_+]; five_prime_UTR [3r_4212742_4213057_+]; exon [3r_4212742_4213080_+]; intron [3r_4213081_4214036_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATATAATCTTGTGAAAAAGCCAGAAAATGTCATCTGTGAATCCGGAATAGTAAGTCGTCACAAACAATTATGCGCAGTTATCTGGAGTAGAAACGGTGACTGGGCTTCCACTTCCTTACCTGGCCTTCGAAAATAGTTTCTTTTATTTTTTCTGCGACGTCATTTCTGCTACGTTTCATTCCCATTCATTATCGAGCAGCCCCACTCCACTCCCTTTTGCCCTCGTTGGCAACTCCAAAAAACAGACCA
**************************************************......(((..((...(((.((((((((.......(((.((((((.......(((((...............))))).........))))))))).......))))).))).)))..))..))).......********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR902008
ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
......................................................................................AGTAGAAGCGGTGACTGGGCTA.............................................................................................................................................. 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
......................AGAAAATGTCATCTGTGAATCCGGA........................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................AATGTCATCTGTGAATCCGGAATAC....................................................................................................................................................................................................... 25 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0
..........................AATGTCATCTGTGAATCCGGA........................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0
............................TGTCATCTGTGAATCCGG............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................AGAAAATGTCATCTGTGAATCCGGG........................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........TGTGAAAAAGCCAGAAAATGT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................TTTCTGCTACGTTTCGTTCCG.................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................CAGAAAATGTCATCTGTGAATCCGGA........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TAGTTTCTTTTATTTTTTCTGCGAA........................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................ATGCGCAGATATCAGGAGGA................................................................................................................................................................ 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGTCATTTCTGCTACGTTTCATT..................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.ATATAATCTTGTGAAAAAGCC.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TGGAGTAGAAACGGTGACTGGT................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................ATGTCATCTGTGAATCCGGA........................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TATCTGGAGTAGAAACGGTGT...................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTCGTCACAAACAATTATG................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................CAGAAAATGTCATCTGTGAATCCGGAA.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................AAATGTCATCTGTGAATCCGGTAT......................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................ATGTCATCTGTGAATCCGGG........................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....AATCTTGTGAAAAAGCCAGA................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATTTCTGCTACGTTTCATTCC................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................ATGCGCAGATATCAGGAG.................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................TGCGCAGATATCAGGAGGA................................................................................................................................................................ 19 3 18 0.33 6 0 0 3 0 0 2 0 0 0 0 0 1
......................................................................ATGCGCAGATATCAGGA................................................................................................................................................................... 17 2 18 0.22 4 0 0 1 0 0 0 0 0 0 0 2 1
......................................................................ATGCGTAGATATCTGGAG.................................................................................................................................................................. 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TGCGCAGATATCAGGAG.................................................................................................................................................................. 17 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................AATGCGCAGATATCAGGAG.................................................................................................................................................................. 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................GTTCCAATTCCGTACCTGG.............................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................TGCGACATCATTTCGGTTA.............................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATATATTAGAACACTTTTTCGGTCTTTTACAGTAGACACTTAGGCCTTATCATTCAGCAGTGTTTGTTAATACGCGTCAATAGACCTCATCTTTGCCACTGACCCGAAGGTGAAGGAATGGACCGGAAGCTTTTATCAAAGAAAATAAAAAAGACGCTGCAGTAAAGACGATGCAAAGTAAGGGTAAGTAATAGCTCGTCGGGGTGAGGTGAGGGAAAACGGGAGCAACCGTTGAGGTTTTTTGTCTGGT
*********************************************************************......(((..((...(((.((((((((.......(((.((((((.......(((((...............))))).........))))))))).......))))).))).)))..))..))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
........................................................................................................................................................................CGATGCATAGTAACGGTA................................................................ 18 2 6 15.83 95 0 69 25 0 0 0 0 0 0 1
........................................................................................................................................................................CGATGCATAGTAACGGTAC............................................................... 19 3 20 3.60 72 0 47 19 0 0 0 0 0 0 6
...............TTTTCGGTCTTTTACAGTAGA...................................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAGACGATGCAAAGCAAGGC.................................................................. 20 2 1 3.00 3 2 0 0 1 0 0 0 0 0 0
..........................TTACAGTAGACACTTAGGCCT........................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................TACAGTAGACACTTAGGCCTT.......................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............ACTTTTTCGGTCTTTTACAGT......................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................TTTCGGTCTTTTACAGTAGA...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCAAAGACGATGCAAAGCAAGG................................................................... 22 3 2 1.00 2 1 0 0 0 1 0 0 0 0 0
...........................TACAGTAGACACTTAGGCCT........................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................TGGACCGGGAGCTTTTATCAA............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CAAAGACGATGCAAAGCAAGGC.................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................AGACGATGCAAAGTAAGGGTA................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........CACTTTTTCGGTCTTTTACAGT......................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................CCCGAAGGTGAAGGAATGGACC.............................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGGGGTGAGGTGAGGGAA................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................AAAGACGATGCAAAGCAAGGC.................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGCAGTAAAGACGATGCAAAGTAAGGTT................................................................. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................GGGGTGAGGTGAGGGAAAACGGGA.......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ACGATGCAAAGCAAGG................................................................... 16 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................AGACGATGCAAAGCAAGG................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............ATTTTCGGTCTTTTACAGTAGA...................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................GGACCGGAAGCTTTTATCAAA.............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................AGACGATGCAAAGCAAG.................................................................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGAAGAATGGACCGGAAGCTTTTAT.................................................................................................................. 25 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................TCAAAGACGATGCAAAGCAAG.................................................................... 21 3 5 0.60 3 0 0 0 1 2 0 0 0 0 0
.....................................................TCAGCAGTGTTTGTTAAGAAAC............................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGGCAAGTAATAGC....................................................... 15 1 5 0.40 2 0 0 0 0 0 0 0 0 2 0
.....................................................................................................................................................................AGACGATGCAAAGCAAGGC.................................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................GGGCAAGTAATAGCT...................................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.......................................................AGCAGTGTTTGTTAAGAA................................................................................................................................................................................. 18 2 8 0.25 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................ACGATGCAAAGCAAGGC.................................................................. 17 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................GGAAGCTTTAGTCAAAGAAA.......................................................................................................... 20 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................GGTGAATGAATGGAC............................................................................................................................... 15 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................AACTTAGGGCAAGTAATAGC....................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................AGCCGATGCATAGTAACGG.................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................ACGCTGTAGCAAAGACG................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................TCAGGGCAAGTAATAGC....................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Generated: 04/23/2015 at 11:20 PM