ID:

dsi_12174

 Coordinate:

x:3412339-3412488 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CACGTCAGGGCCAACCCACATCATCTCGGATCTCGAATCTCGAATCACAGATCTTAAATTTGAAATCCGTAGTCTTGGTTTCTTCACTGACAATCGGAGATGTTTGGACACCTTGGTTTTGGGTCAATCCCAAGCTGTCACGAGGGATCCGTTCGTAGATGATTATATGTCTCTAAGCTCTCTTTTCTTTCCCTTTGCAGCTCAGTTTTTGATGTCAGCCCGCAGTGGACGCAGAATGACCACGCCGGGC
*************************************************************************************************.....((((((((.(((((..(((...)))..))))).)))).)))).********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................................TGTCACGAGGGACCCGATCGTAC............................................................................................ 23 3 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................................................TGTCACGAGGGACCCGATCGTA............................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0
...................................................TCTTAAATTTGAAAGCTGTAGTG................................................................................................................................................................................ 23 3 2 1.50 3 2 0 0 0 1 0 0
...................................................TCTTAAATTTGAAAGCTGTAGTGT............................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................AGATGTTTGGACACCTTGGTT.................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
............................................TCACAGATCTTAAATTTGAAATCCGT.................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................CTGACAATCGGAGATGTTTGG............................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................CAATCCCAAGCTGTCACGAGG......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................TTGGACACCTTGGTTTTGGGT.............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................TAGATGATTATATGA................................................................................ 15 1 20 0.60 12 0 12 0 0 0 0 0
.........................................................................................................................................................GGTAGATGATTATATGACT.............................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TGGACGCAGATTGACCACGTCA... 22 3 2 0.50 1 1 0 0 0 0 0 0
..................................................AGCTTAAATTTGAAATCTG..................................................................................................................................................................................... 19 2 9 0.33 3 0 0 0 0 0 3 0
..............................................................................................CGCAGATGTTTGGAC............................................................................................................................................. 15 1 9 0.11 1 0 0 0 0 1 0 0
.......................................................AAATTTGAAATCTGGCGTCT............................................................................................................................................................................... 20 3 19 0.11 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................................AGCCCGAAGTGGTCGCA................. 17 2 10 0.10 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................CCCCTTGTAGCTCAGTT........................................... 17 2 12 0.08 1 0 0 0 0 0 0 1
.........................................GAATCACTGGTCTTAAA................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

GTGCAGTCCCGGTTGGGTGTAGTAGAGCCTAGAGCTTAGAGCTTAGTGTCTAGAATTTAAACTTTAGGCATCAGAACCAAAGAAGTGACTGTTAGCCTCTACAAACCTGTGGAACCAAAACCCAGTTAGGGTTCGACAGTGCTCCCTAGGCAAGCATCTACTAATATACAGAGATTCGAGAGAAAAGAAAGGGAAACGTCGAGTCAAAAACTACAGTCGGGCGTCACCTGCGTCTTACTGGTGCGGCCCG
*********************************************************************************************************.....((((((((.(((((..(((...)))..))))).)))).)))).************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.......................................................................CAGATCCGAAGCAGTGACTG............................................................................................................................................................... 20 3 1 1100.00 1100 731 311 0 22 23 5 4 0 1 2 1 0
.......................................................................CAGATCCGAAGCAGTGACT................................................................................................................................................................ 19 3 7 33.57 235 162 66 0 0 7 0 0 0 0 0 0 0
........................................................................AGATCCGAAGCAGTGACTG............................................................................................................................................................... 19 3 13 26.00 338 188 84 6 2 26 3 1 3 9 10 3 3
.......................AGAGCCTAGAGCTTAGAGCTTAGTGT......................................................................................................................................................................................................... 26 0 1 19.00 19 0 0 19 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTGTCTAGAAT.................................................................................................................................................................................................. 26 0 1 19.00 19 0 0 18 1 0 0 0 0 0 0 0 0
.............TGGGTGTAGTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 24 0 1 18.00 18 0 0 18 0 0 0 0 0 0 0 0 0
.......................................................................CAGAACCAAAGAAGTGACTGTTAGCCT........................................................................................................................................................ 27 0 1 13.00 13 0 0 0 13 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGAGTCAAAAACTACAGTCGGGCGT.......................... 25 0 1 10.00 10 0 0 0 10 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGCGTCACCTGCGTCTTACTGGT........ 25 0 1 7.00 7 0 0 6 0 0 0 0 1 0 0 0 0
....................................................................................................................................TCGACAGTGCTCCCTAGGCAAGCAT............................................................................................. 25 0 1 7.00 7 0 0 1 6 0 0 0 0 0 0 0 0
GTGCAGTCCCGGTTGGGTGTAGT................................................................................................................................................................................................................................... 23 0 1 6.00 6 0 0 6 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAAACCCAGTTAGGGTTCGACAGT.............................................................................................................. 26 0 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTCGACAGTGCTCCCTAGGCAAGCAT............................................................................................. 26 0 1 5.00 5 0 0 2 3 0 0 0 0 0 0 0 0
..........................................................................................................CTGTGGAACCAAAACCCAGTTAGGGT...................................................................................................................... 26 0 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0 0
..................GTAGTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 19 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGCGTCACCTGCGTCTTA............. 20 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTCGGGCGTCACCTGCGTCTTACTGGT........ 27 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTGTCT....................................................................................................................................................................................................... 21 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTCAAAAACTACAGTCGGGCGTCAC....................... 26 0 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0 0
...........GTTGGGTGTAGTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
..........................GCCTAGAGCTTAGAGCTTAGTGT......................................................................................................................................................................................................... 23 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTTCGACAGTGCTCCCTAGGCAAGCAT............................................................................................. 27 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGATTCGAGAGAAAAGAAAGGGAAA...................................................... 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGACAGTGCTCCCTAGGCAAGCAT............................................................................................. 24 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
............TTGGGTGTAGTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
.TGCAGTCCCGGTTGGGTGTAGT................................................................................................................................................................................................................................... 22 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
..............GGGTGTAGTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 23 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCGGGCGTCACCTGCGTCTTACTGGT........ 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................CAAAACCCAGTTAGGGTTCGACAGT.............................................................................................................. 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
......TCCCGGTTGGGTGTAGTAGAGCCT............................................................................................................................................................................................................................ 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................TTAGAGCTTAGTGTC........................................................................................................................................................................................................ 15 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGAAAGGGAAACGTCGAGTCAA........................................... 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................GCATCAGAACCAAAGAAGTGACTGT.............................................................................................................................................................. 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................CAGATCCCAAGCAGTGACTG............................................................................................................................................................... 20 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGACAGTGCTCCCTAGGCAAGCATCTA.......................................................................................... 27 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.....................................AGAGCTTAGTGTCTAGAATTTAAACTTT......................................................................................................................................................................................... 28 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
............................CTAGAGCTTAGAGCTTAGTGTCTA...................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................CCTGTGGAACCAAAACCCAGTTAGGGT...................................................................................................................... 27 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
...........................CCTAGAGCTTAGAGCTTAGTGT......................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....GTCCCGGTTGGGTGTAGTAGAGCCT............................................................................................................................................................................................................................ 25 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TGCTCCCTAGGCAAGCAT............................................................................................. 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...CAGTCCCGGTTGGGTGTAGTAGAGCCT............................................................................................................................................................................................................................ 27 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................AGGGTTCGACAGTGCTCCCTAGGCAA................................................................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTACAGTCGGGCGTCACCTGCGTCTT.............. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
....AGTCCCGGTTGGGTGTAGTAGAGCCT............................................................................................................................................................................................................................ 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CGAGAGAAAAGAAAGGGAAACGTCGAGT.............................................. 28 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.......................AGAGCCTAGAGCTTAGAGC................................................................................................................................................................................................................ 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTCGAGAGAAAAGAAAGGGAAACGT................................................... 25 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
..................GTAGTAGAGCCTAGAGCTTAGAGCTT.............................................................................................................................................................................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.TGCAGTCCCGGTTGGGTGTAGTAGAG............................................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................AGCCTAGAGCTTAGAGCTTAGTGT......................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0
........................................................................................CTGTTAGCCTCTACAAACCTGTGGAA........................................................................................................................................ 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGCGTCACCTGCGT................. 16 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................CTGTGGAACCAAAACCCAGTT........................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GGTCAAAAACTACAGTCGGGCGTCAC....................... 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................AAACCCAGTTAGGGTTCGACAGTGCTC.......................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................TGTAGTAGAGCCTAGAGCTTAGAGCT............................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................GCTCCCTAGGCAAGCATCTACTAAT..................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................TGTCTAGAATTTAAACTTTAGGCAT................................................................................................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................TGTTAGCCTCTACAAACCTGTGGAA........................................................................................................................................ 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................AGGCATCAGAACCAAAGAAGTGACTGT.............................................................................................................................................................. 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCAAGCATCTACTAATAT................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCAAGCATCTACTAAT..................................................................................... 16 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...CAGACCCGGAAGGGTGTAG.................................................................................................................................................................................................................................... 19 3 7 1.86 13 0 0 13 0 0 0 0 0 0 0 0 0
..................GTAGTAGAGCCTAGAGCTTAGA.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........GTCGGGTGTAGTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CGAGAGAAAAGAAAGGGAA....................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......CCCGGTTGGGTGTAGTAGAGC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............TGGGTGTAGTAGAGCCTAGAG........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......TCCCGGTTGGGTGTAGT................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTCAAAAACTACAGTCGGGCGTCACCT..................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................TAGAGCTTAGTGTCTAGAATTTAAA............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................AGGCATCAGAACCAAAG........................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................ACCCAGTTAGGGTTCGA.................................................................................................................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TACAGAGATTCGAGAG.................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ACTACAGTCGGGCGTCACCTGCGTCTT.............. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGAGCCTAGAGCTTAGAGCTTAGTGTC........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACCTGCGTCTTACTGGTGCGGC... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............TGGGTGTAGTAGCGCCTAGAGCTT..................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTGGGCGTCACCTGCGTCTTACTGGT........ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................GAGCTTAGAGCTTAGTGTCTA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGAAAGGGAAACGTCGAGTTAAAAACT...................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAAAAACTACAGTCGGGCGTCACCTGCGT................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGGGAAACGTCGAGT.............................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTGTCTAGAATTT................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TTCGACAGTGCTCCCTAGGCAAGCATCT........................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AACGTTGAATCTAAAACTACAGT................................. 23 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....AGTCCCGGTTGGGTGTAGT................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGAGAAAAGAAAGGGAAACGTCGAGT.............................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACAGTCGGGCGTCACCTGCGTCTT.............. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AACCCAGTTAGGGTTCGACAGTGCTCCC........................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............TTGGGTGTAGTAGAGCCT............................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................CAGAACCGAAGCAGTGACTG............................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..GCAGTCCCGGTTGGGTGTAGT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................TCTAGAGCTTAGAGCTTAGTGT......................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GAAACGTCGAGTCAAAAACTACAGT................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................CTGTTAGCCTCTACAAAC................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................TTAGAGCTTAGTGTCTAGAATTTAAACT........................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................CTGTTAGCCTCTACAAACCTGTG........................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ATACAGAGATTCGAGAGAAAAGAAA............................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.TGCAGTCCCGGTTGGGTGTAGTA.................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGACTGTTAGCCTCTACA................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGATTCGAGAGAAAAGAAAGGGAA....................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................CTAGAGCTTAGAGCTTAGT........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................CTAGAGCTTAGAGCTTAGTGT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............TGGGTGTAGTAGAGCCTAGA......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TACAGTCGGGCGTCA........................ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTGTC........................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............TTGGTGTAGTAGAGCCTAGAGCTC..................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GAAAGGGAAACGTCGAGTCAAA.......................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTTCGACAGTGCTCCCTAGGCAAG................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GAGAGAAAGGAAAGGGAAACGTCGAGT.............................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAGTGCTCCCTAGGCAAGCATCTACT........................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................TGTCTAGAATTTAAACTTTAGGCATCAG................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTCGACAGTGCTCCCTAGGCAAGCATCTA.......................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TGTTAGCCTCTACAAACCTGTGGAACCA..................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................CAAAGAAGTGACTGTTAGCCTCTA..................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................CAGTGCTCCCTAGGCAAGCATCTA.......................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................CCAAAACCCAGTTAGGGTTCGACAGTG............................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTGTCTAGAA................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................TGTAGTAGAGCCTAGAGCTTA.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCACCTGCGTCTTACAGGTGCGGCC.. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTGTCTA...................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTGCGTCTTACTGGT........ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.TGCAGTCCCGGTTGGGTGT...................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGAGTCAAAAACTACAGTCGGGCGTC......................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................AACCCAGTTAGGGTTCGACAGTGCTC.......................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGCGTCACCTGCGTCTTACTGGTGC...... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAGCGCTCCCTAGGCAAGCAT............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................GTGGAACCAAAACCCAGTTAGGGTTCG................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............GGTGTAGTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGAGCCTAGGGCTTAGAGCTTAGTGT......................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCGGGCGTCACCTGCGTCTTACT........... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAAACTACAGTCGGGCGTCACCTGCGT................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................TTAGAGCTTAGTGTCTA...................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTACAGTCGGGCGTCACCTGCGT................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............TGGGTGTAGTAGAGCCTA........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................CTGTTAGCCTCTACAAACCTGTGGAAC....................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................CAGATCCTAAGCAGTGACTG............................................................................................................................................................... 20 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................CTAGAATTTAAACTTTAGGCAT................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTGCGTCTTACTGGTGCGGCC.. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGAGCCTAGAGCTTAGAGCTTAGTCT......................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................ACAAACCTGTGGAACCA..................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..GCAGTCCCGGTTGGGTGTAGTAGAGCCT............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................CAGAACCAAAGAAGTGACTGTTAGCC......................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............TGGGTGTAGTAGAGCCTAGAGCTTCCAGG................................................................................................................................................................................................................ 29 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................GTGGAACCAAAACCCAGTTAGGGTT..................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................GGCAAGCATCTACTAATATAC................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................GTAGAGCCTAGAGCTT..................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGAGCCTAGAGCTTAGAGCT............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................CCTAGAGCTTAGAGCTTAGTCT......................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........CGGTTGGGTGTAGTAGAGCCTAGAGC....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGCGTCACCTGCGTC................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGTCAAAAACTACAGTCGGGCGT.......................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............TGGGTGTAGTAGAGCCTAGAGCTAA.................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TGTTAGCCTCTACAAACCTGTGGAAC....................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAACTACAGTCGGGCGT.......................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGGGCGTCACCTGCGTCTTACTAGT........ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................AGGCATCAGAACCAAAGAAGTGA.................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGAGTCAAAAACTACAGTCGG.............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................GTAGTAGAGCCTAGAGCTTAGAGCGT.............................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTGTCTAGA.................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGAGAGAAAAGAAAGGGAAACCGCA................................................. 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAACTACAGTCGGGCGTCACCTGCGT................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................AGAGCTTAGAGCTTAGTG.......................................................................................................................................................................................................... 18 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................GCATCAGAACCAAAGAAGTGA.................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGACAGTGCTCCCTAGGCAAGCATCTACT........................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CGAGAGAAAAGAAAGGGAAACGTCG................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................TAGGCATCAGAACCAAAGAAGTGACT................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GAGATTCGAGAGAAAAGAAAGGGAA....................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............TGGGTGTAGTAGAGCCTAGAGCTTA.................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAAGAAAGGGAAACGTCGAGTCAAAAA........................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...CAGTCCCGGTTGGGTGTAGTAGAG............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CCTGTGGAACCAAAACCCA.............................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCCCTAGGCAAGCAT............................................................................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCGAGTCAAAAACTACAGT................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGAGTCAAAAACTACAGT................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................GAGCTTAGTGTCTAGAATTTAAACTTGCT....................................................................................................................................................................................... 29 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................TAGGCATCAGAACCA........................................................................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........GTTGGGTGTAGTAGAGCCT............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............GGGTGTAGTAGAGCCTAGAGCT...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................CAGATCCAAAGCAGTGACTG............................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................AGAGCCTAGAGCTTAGA.................................................................................................................................................................................................................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCACCTGCGTCTTACTGGTGCGGC... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................AGAGCTTAGTGTCTAGAATTTAAACT........................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................CCAAAGAAGTGACTGTTAGCCTCTAT.................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTCGGGCGTCACCTGCGTCTTACTGGT........ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGCGTCACCTGCGTCTTACTGGTGC...... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................AGATCCGAAGAAGTGACTG............................................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGGCAAGCATCTACT........................................................................................ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AGAGAAAAGAAAGGGAAA...................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ACCAAAACCCAGTTAGGGTTCGACAGT.............................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AACCCAGTTAGGGTTCGACAGTGCTCCCT....................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AGATTCGAGAGAAAAGAA............................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GATTCGAGAGAAAAGAAAGGGAAACGT................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGACAGTGCTCCCTA...................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................TAGAGCTTAGAGCTTAGTGTCTAGAAT.................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGAGCCTAGAGCTTAGAGCTTAGT........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGTTAGGGTTCGACAGTGCT........................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTCGACAGTGCTCCCTAGG.................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CAAAAACTACAGTCGGGCGTCACCTG.................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................CCAAAGAAGTGACTGT.............................................................................................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCGGGCGTCACCTGCGT................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTCGGGCGTCACCTGCGTCT............... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATTCGAGAGAAAAGAAAGGGAAACGT................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................TGAAGTGACTGTTAGCCTCTA..................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AAAGAAGTGACTGTTAGCCTCT...................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......CCCGGTTGGGTGTAGTAGAGCCTAGAG........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GAGAGAAAAGAAAGGGAAACGTCGAGT.............................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................CCTAGGCAAGCATCTA.......................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CCTGCGTCTTACTGGTGC...... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................AGAGCTTAGTGTCTAGAATTTAAAC............................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................TTAGGCATCAGAACCAAAGAAGTGA.................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................CAGATCCGAAGTAGTGACTG............................................................................................................................................................... 20 3 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................AGATCCAAAGCAGTGACTG............................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........GTTGGGTGTAGTAGA................................................................................................................................................................................................................................ 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGAGCCTAGAGCTTA.................................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................AGAACCGAAGCAGTGACTG............................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................AGTTAGGGTTCGATA................................................................................................................ 15 1 10 0.40 4 0 0 4 0 0 0 0 0 0 0 0 0
.......................................................................CAGATCCGAAGCAGTGAC................................................................................................................................................................. 18 3 20 0.35 7 0 0 0 4 0 0 3 0 0 0 0 0
...............................................................................................................................AGGCTTCGACAGTGC............................................................................................................ 15 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................AGAAAAGAAAGGGAAA...................................................... 16 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAGTCAGTTAGGGTTCG................................................................................................................... 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCAGATCCGAAGCAGTGAC................................................................................................................................................................. 19 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAATAACAGTCGGGCGT.......................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................AGATCCTAAGCAGTGACTG............................................................................................................................................................... 19 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAGTTAGGGTTCGATA................................................................................................................ 17 2 15 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAGTTAGGGTTCGATAT............................................................................................................... 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGTTAGGGTTCGATATT.............................................................................................................. 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................AGATCCGAAGTAGTGACTG............................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATAGGCTACAGTCGGGCGT.......................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGTTAGGGTTCGATATTTC............................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GGGAGAAAAGAAAGAGGAAC..................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
...CAGGCCCGGTCGGGTG....................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCAGATCCGAAGCAGTGA.................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:3412289-3412538 + dsi_12174 CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGAATCTC--G--------------A--------------ATCACAGA-------TCTTAAATTT--------GAAATCCGTAGTCTTGGTTTCTTCACTGACAATCGGAG------ATGTTTG---------GACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCACGAGGGAT---------------CCGTTCGT-AGATGATT---ATATGTCT--CTAAGCTCTCTTTT---------------CTTTC----CCTTTGCAGC------TCAGTTT-TT-GATGTCAGCC---CGCAGTGGACGCAGAATGACCA------CGCCGGGC
droSec2 scaffold_4:2997889-2998140 - CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGAATCTC--G--------------A--------------ATCACAGA-------TCTTAAATTT--------GAAATCCGTAGTCTTGGTTTCTTCACTGACAATCGGAG------ATGTTTG---------GACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCACGAGGGAT---------------CCGTTCGT-AGATGAGTGACA-ATGTCT--CTAAGCTCTCTTTT---------------CTTTC----CCTTTGCAGC------TCAGTTT-TT-GATGTCAGCC---CGCAGTGGACGCAGAATGACCA------CGCCGGGC
dm3 chrX:3714549-3714808 + CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGAATCTC--G--------------AATCTCGA-------ATCACAGA-------TCTTAAATTT--------GAAATCCGTAGTCTTGGTTTCTTCACTGACAATCGGAG------ATGTTTG---------GACACCTCGGTTTTGGGTCAATCCC---AAGCTGTCACGAGGGAT---------------CCGTTCGT-AGATGAGTGACATATGTCT--CTAAGCTCTCTTTT---------------CTTTC----CCTTTGCAGC------TCAGTTT-TT-GATGTCAGCC---CACAGTGGACGCAGAATGACCA------CGCCGGGC
droEre2 scaffold_4690:1097796-1098077 + CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGGATCTC--G--------------AGTCTGGAATCTTGAAACACAGA-------TCTCAAATAT--------GAAATCCGTAGTCTTGGTTTCTTCACCGACAATCCGAG------ATGTTTGGACATTTCGGACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCATGAGGGAT---------------CCGTTCGC-AGAGGAGTGACACATGTCT--CTAA-TTCTTT---CTCCATCTGG------TTTC----TCTTTGCAGC------TCAGTTT-TTGGATGTCAGCC---CGAAGTGGACGCAGAATGACCA------CGCCGGGC
droYak3 X:4702587-4702855 - CACGTCAGGGCCAACCCACATCATCTTGGA-TCT-------CGAATCAC--A--------------GA--------------TCTGAAA-------TCTCAAATTT--------GAAATCCGTAGTCTTGGTTTCCTCACTGACAATCCGAG------ATGTTTGGACATGTTTGACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCATGAGGGAT---------------CCATTCGT-AGATGAGTGACACATGTCT--CTAACCTCTTT---CTCCTTCTTG------TTTT----CATTTGCAGC------TCATTTT-TTGGATGTCAGCC---AGAAGTGGACGCGGTATGACCA------CGCCGGGC
droEug1 scf7180000408900:40921-41184 - CACGTCAGGGCCAACCCACATCATCTTGAA-TCT-------TGGATCTC--A--------------A--------------ATCA--------------CAGATCT--------GAGATCTGGAGTCTTGGTTTCTCCACTGACATGGAGTG------ATGTTTGGACATTTTAGACACCTTGGTTTTGGGTCAACATT---AAGCTGTCATGAGGGAAT--------------CTATCCATTGTTTGAGTGACACTTGTCT--CTAAACCCTTT---CTTCCTTTGT------CTTC----CATTTGCAGC------TCAATTT-TTGGATGTCAGCG---AGAAGTGGAAGCAGAATGACCA------CTCCGGGT
droBia1 scf7180000302126:1376796-1377068 - CACGTCAGGGCCAACCCACATCATCTCGAA-CCT-------CAAATCTC--G--------------AGTATGGG-------ATCTCAAA-------TCTCGGCTCT--------CAAATC-----TCTTGGTTTCTCCCCTGACATGCGGAG------ATGTTTGGACACTTTGGACACCTTGGTTTTGGGTCACCATTGTCGGGCTGTCATGAGGG-T---------------CCGTTCGT-GGTTGAGTGACACTTGTCT--CTAAGCTCGTT---CTCCCTTTTT------CCCT----CCTCTGCAGC------TACGATT-TTGGATGTCAGCC---AGAAGTGGACGCAGAATGACCA------CTCCGGGC
droTak1 scf7180000415078:368150-368438 + CACGTCAGGGCCAACCCACATCATTGTGGAGTCTTGGATCTCAAAGCTC--G--------------A--------------AACACAAA-------TCTCAGATCT--------GAAATCTGGGCTCTTGGTTTCTCCACTGACATTCGGAG------ATGTTTG---------GACACCTCGGTTTGGGGTCAACATC---AAGCTGTCATGAGGGATTCCCATCCCGATCCCTCATTCGT-GGTTGAGTGACACTTGTCT--CTAAGCTCATT---TTCCCTCTCTTCTTCCTCTC----CCCTTGCAGC------TCAATTT-TTGGATGTCAGCC---AGAAGTGGACGCAGAATGACCA------CTCCGGGC
droEle1 scf7180000490996:969861-970127 + CACGTCAGGGCCAACCCACATCATTTCGAA-TCT-------CAAATCTC--G--------------AATCTCGA-------ATCTTGAATCTCAGCAGCCACATTT--------CAAATCTGGTGTCTTGGTTTCTTCTCTGACATGCG----------------GACTTTTTGGACAACTTGGTTTTGGGTCAACATC---AA--TGT--TGAA----------------------------CAATGAGTGACACTTCTCTCACTAAGCTCTTT---CTCCCTTTGT--------TCCATTGTCTTGCAGCATCAGCACCATTT-TTGAATGTCAACC---AGGAGTGGACGCAGAATGACCA------CTCCGGGC
droRho1 scf7180000779334:1032176-1032428 - CACGTCAGGGCCAACCCACATCATCTCGAA-TCT-------CGAATCTC--A--------------GA----------------------------AACCACATCT--------CAAATCTGGAGTCTTGGTTTCTCCTCTGACATGTG----------------GACTTTTTGGACACCTTGGTTTTGGGTCAGCTTC---AAGCTGTCATGAGGGAT---------------ATGTGAAT--GATGAGTGACACTTGTCT--CTAAGCTCTTT---CTCCCTTTGT--------TCCATTGTCTTACAGC------ACAATTT-TTGAATGTCAACC---AGGAGTGGACGCAGAATGACCA------CTCCGGGC
droFic1 scf7180000453901:761357-761640 - CACGTCAGGGCCAACCCACATCATTTTGAA-TCT-------CGGATCTCTGGAGTCTCAGATCTCGA--------------ACCTCGAA-------TCTCGAATCT--------CGAATCTGGGCTCTTGGTTTCTCCCCTGGCATGACAAG------ATGTGTGGACTTTTCGGACACCTCGGTTGTGGGTCAACATCAGC-AGCTGTCAAGGGGAAT---------------C----CGC-AGATGAGTGACACTTGTCT--CTAACCTTTTC---CTTCCTTCTC------CTCC----CTCTTGCAGC------CCAGTTGGTTGAATGTCAGCC---CGAAGTGGACGCAGAATGACAA------CACCGGGC
droKik1 scf7180000302517:130313-130565 - CACGTCAGGGCCAACCCACATTATCTTGGA-TCT-------TAGATCTC--A--------------AAACTTGA-------ATCTTGAA-------TCTCTTTTTTTCCTTTTTGAAATCTCAAATCTGGGATCCCTCAGTTGCTGTCAGAGTCGAAAGTG-----------------------------ACCGATGAC---ATGGCGACATGAA--AT---------------C----AGT-GATTGAGTGACACTTGTCT--TTTACCTCTCATTTCTTCTTTTG-----------------CTTACAG---------AGCTT-CA-CAACTCAACCCGCAGTAGTGGAGGCAAAATGACCACCA---CACCGGGC
droAna3 scaffold_12929:276360-276374 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCA------CGCCCATG
droBip1 scf7180000395804:7075-7147 - TTTCTTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----TTTCAGTAAA------CCAACTT-TTAAAGGCCTCTT---AGGAGTGGGCTTACGATGTCCA------CGCCCATG
droPer2 scaffold_25:188382-188426 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCAGCC---ACCGGTCGCCGCAGAATGGCCAGTACTACGACCAAG
droVir3 scaffold_13042:3395800-3395813 + AATGGCCACGCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:3843598-3843619 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCACAATGGCCA------CCCATGGC
droGri2 scaffold_15081:2910988-2911002 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGACGC------CCCCGAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGAATCTC--G--------------A--------------ATCACAGA-------TCTTAAATTT--------GAAATCCGTAGTCTTGGTTTCTTCACTGACAATCGGAG------ATGTTTG---------GACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCACGAGGGAT---------------CCGTTCGT-AGATGATT---ATATGTCT--CTAAGCTCTCTTTT---------------CTTTC----CCTTTGCAGC------TCAGTTT-TT-GATGTCAGCC---CGCAGTGGACGCAGAATGACCA------CGCCGGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................AG------ATGTTTG---------GACACCTTGGTT................................................................................................................................................................................................2111.00100100000000000000
..................................................................................TCACAGA-------TCTTAAATTT--------GAAATCCGT...............................................................................................................................................................................................................................................................2611.00100000000001000000
...........................................................................................................................................CTGACAATCGGAG------ATGTTTG---------G...........................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................CAATCCC---AAGCTGTCACGAGG..................................................................................................................................................................2111.00100010000000000000
..................................................................................................................................................................TTG---------GACACCTTGGTTTTGGGT..........................................................................................................................................................................................2111.00100000000001000000
.................................................................................................................................................................................................................................................T-AGATGATT---ATATGA......................................................................................................................15200.6012000000000012000000
droSec2
CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGAATCTC--G--------------A--------------ATCACAGA-------TCTTAAATTT--------GAAATCCGTAGTCTTGGTTTCTTCACTGACAATCGGAG------ATGTTTG---------GACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCACGAGGGAT---------------CCGTTCGT-AGATGAGTGACA-ATGTCT--CTAAGCTCTCTTTT---------------CTTTC----CCTTTGCAGC------TCAGTTT-TT-GATGTCAGCC---CGCAGTGGACGCAGAATGACCA------CGCCGGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGAATCTC--G--------------AATCTCGA-------ATCACAGA-------TCTTAAATTT--------GAAATCCGTAGTCTTGGTTTCTTCACTGACAATCGGAG------ATGTTTG---------GACACCTCGGTTTTGGGTCAATCCC---AAGCTGTCACGAGGGAT---------------CCGTTCGT-AGATGAGTGACATATGTCT--CTAAGCTCTCTTTT---------------CTTTC----CCTTTGCAGC------TCAGTTT-TT-GATGTCAGCC---CACAGTGGACGCAGAATGACCA------CGCCGGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................TCTTTT---------------CTTTC----CCTTTGCAGC------TCAGT.......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................CATATGTCT--CTAAGCTCTCTTTT---------------CT...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GGACGCAGAATGACCA------CGCCGG..2211.0010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................C----CCTTTGCAGC------TCAGTTT-TT-GATG.............................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCATCTCGGA-TCT-------CGAATCTC--G--------------AATC....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CACGAGGGAT---------------CCGTTCGT-AGATGAGTG..............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........GCCAACCCACATCATCTCGGA-TCT-------CG...............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TC--G--------------AATCTCGA-------ATCACAGA-------TCTTAAATT.................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTGGTTTCTTCACTGACAATCGGAG------ATG.........................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TTTT---------------CTTTC----CCTTTGCAG...................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
droEre2
CACGTCAGGGCCAACCCACATCATCTCGGA-TCT-------CGGATCTC--G--------------AGTCTGGAATCTTGAAACACAGA-------TCTCAAATAT--------GAAATCCGTAGTCTTGGTTTCTTCACCGACAATCCGAG------ATGTTTGGACATTTCGGACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCATGAGGGAT---------------CCGTTCGC-AGAGGAGTGACACATGTCT--CTAA-TTCTTT---CTCCATCTGG------TTTC----TCTTTGCAGC------TCAGTTT-TTGGATGTCAGCC---CGAAGTGGACGCAGAATGACCA------CGCCGGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CACGTCAGGGCCAACCCACATCATCTTGGA-TCT-------CGAATCAC--A--------------GA--------------TCTGAAA-------TCTCAAATTT--------GAAATCCGTAGTCTTGGTTTCCTCACTGACAATCCGAG------ATGTTTGGACATGTTTGACACCTTGGTTTTGGGTCAATCCC---AAGCTGTCATGAGGGAT---------------CCATTCGT-AGATGAGTGACACATGTCT--CTAACCTCTTT---CTCCTTCTTG------TTTT----CATTTGCAGC------TCATTTT-TTGGATGTCAGCC---AGAAGTGGACGCGGTATGACCA------CGCCGGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CACGTCAGGGCCAACCCACATCATCTTGAA-TCT-------TGGATCTC--A--------------A--------------ATCA--------------CAGATCT--------GAGATCTGGAGTCTTGGTTTCTCCACTGACATGGAGTG------ATGTTTGGACATTTTAGACACCTTGGTTTTGGGTCAACATT---AAGCTGTCATGAGGGAAT--------------CTATCCATTGTTTGAGTGACACTTGTCT--CTAAACCCTTT---CTTCCTTTGT------CTTC----CATTTGCAGC------TCAATTT-TTGGATGTCAGCG---AGAAGTGGAAGCAGAATGACCA------CTCCGGGTSizeHit CountTotal NormTotal
No Reads
droBia1
CACGTCAGGGCCAACCCACATCATCTCGAA-CCT-------CAAATCTC--G--------------AGTATGGG-------ATCTCAAA-------TCTCGGCTCT--------CAAATC-----TCTTGGTTTCTCCCCTGACATGCGGAG------ATGTTTGGACACTTTGGACACCTTGGTTTTGGGTCACCATTGTCGGGCTGTCATGAGGG-T---------------CCGTTCGT-GGTTGAGTGACACTTGTCT--CTAAGCTCGTT---CTCCCTTTTT------CCCT----CCTCTGCAGC------TACGATT-TTGGATGTCAGCC---AGAAGTGGACGCAGAATGACCA------CTCCGGGCSizeHit CountTotal NormTotal
No Reads
droTak1
CACGTCAGGGCCAACCCACATCATTGTGGAGTCTTGGATCTCAAAGCTC--G--------------A--------------AACACAAA-------TCTCAGATCT--------GAAATCTGGGCTCTTGGTTTCTCCACTGACATTCGGAG------ATGTTTG---------GACACCTCGGTTTGGGGTCAACATC---AAGCTGTCATGAGGGATTCCCATCCCGATCCCTCATTCGT-GGTTGAGTGACACTTGTCT--CTAAGCTCATT---TTCCCTCTCTTCTTCCTCTC----CCCTTGCAGC------TCAATTT-TTGGATGTCAGCC---AGAAGTGGACGCAGAATGACCA------CTCCGGGCSizeHit CountTotal NormTotal
No Reads
droEle1
CACGTCAGGGCCAACCCACATCATTTCGAA-TCT-------CAAATCTC--G--------------AATCTCGA-------ATCTTGAATCTCAGCAGCCACATTT--------CAAATCTGGTGTCTTGGTTTCTTCTCTGACATGCG----------------GACTTTTTGGACAACTTGGTTTTGGGTCAACATC---AA--TGT--TGAA----------------------------CAATGAGTGACACTTCTCTCACTAAGCTCTTT---CTCCCTTTGT--------TCCATTGTCTTGCAGCATCAGCACCATTT-TTGAATGTCAACC---AGGAGTGGACGCAGAATGACCA------CTCCGGGCSizeHit CountTotal NormTotal
No Reads
droRho1
CACGTCAGGGCCAACCCACATCATCTCGAA-TCT-------CGAATCTC--A--------------GA----------------------------AACCACATCT--------CAAATCTGGAGTCTTGGTTTCTCCTCTGACATGTG----------------GACTTTTTGGACACCTTGGTTTTGGGTCAGCTTC---AAGCTGTCATGAGGGAT---------------ATGTGAAT--GATGAGTGACACTTGTCT--CTAAGCTCTTT---CTCCCTTTGT--------TCCATTGTCTTACAGC------ACAATTT-TTGAATGTCAACC---AGGAGTGGACGCAGAATGACCA------CTCCGGGCSizeHit CountTotal NormTotal
No Reads
droFic1
CACGTCAGGGCCAACCCACATCATTTTGAA-TCT-------CGGATCTCTGGAGTCTCAGATCTCGA--------------ACCTCGAA-------TCTCGAATCT--------CGAATCTGGGCTCTTGGTTTCTCCCCTGGCATGACAAG------ATGTGTGGACTTTTCGGACACCTCGGTTGTGGGTCAACATCAGC-AGCTGTCAAGGGGAAT---------------C----CGC-AGATGAGTGACACTTGTCT--CTAACCTTTTC---CTTCCTTCTC------CTCC----CTCTTGCAGC------CCAGTTGGTTGAATGTCAGCC---CGAAGTGGACGCAGAATGACAA------CACCGGGCSizeHit CountTotal NormTotal
No Reads
droKik1
CACGTCAGGGCCAACCCACATTATCTTGGA-TCT-------TAGATCTC--A--------------AAACTTGA-------ATCTTGAA-------TCTCTTTTTTTCCTTTTTGAAATCTCAAATCTGGGATCCCTCAGTTGCTGTCAGAGTCGAAAGTG-----------------------------ACCGATGAC---ATGGCGACATGAA--AT---------------C----AGT-GATTGAGTGACACTTGTCT--TTTACCTCTCATTTCTTCTTTTG-----------------CTTACAG---------AGCTT-CA-CAACTCAACCCGCAGTAGTGGAGGCAAAATGACCACCA---CACCGGGCSizeHit CountTotal NormTotal
No Reads
droAna3
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCA------CGCCCATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTCTTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT----TTTCAGTAAA------CCAACTT-TTAAAGGCCTCTT---AGGAGTGGGCTTACGATGTCCA------CGCCCATGSizeHit CountTotal NormTotal
No Reads
droPer2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTCAGCC---ACCGGTCGCCGCAGAATGGCCAGTACTACGACCAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
AATGGCCACGCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCACAATGGCCA------CCCATGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGACGC------CCCCGAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:48 AM