dsi_12157

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	-
DNAREP1_DM	RC	Helitron	-
MINIME_DN	Unknown	Unknown	-

TTGCTGTTTATGATTGCATATCAAAATCGTCTTTTTTTTTGTTTATTTCCTATTTTATTGCTTGTAAAGTAAAAGCTTATATTAGATTCGGTGCAATGTATGTAATTGGTAGAAGAAAGCGTTTCGGATCATAGAAAGTATATCTATGTACATATATATTTTTGATCCGGATTAATAGGAACGCATTGATCCTATTGCAGCGCCAGTTTGTTTCCAAATGTTGGGACGTTTGTTCTAACTCCCACAACCC *************************************************************************************((((..(((.(((((((....(((((.....((.((((........))))))...))))).....)))))))..)))..)))).....*************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR902008 ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo	M053 female body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.................ATATCAAGATCGTCTTTTCGTTT..................................................................................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0	0	0	0	0
............ATTGCATATCAAAATCGTCTT.........................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TCGGTGCAATGTATGTAATTGGTAGA.........................................................................................................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................TTGATCCGGATGAAAAGGA......................................................................	19	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................TCGCCAGTTTGTTTCCAAATGTTGGGA........................	27	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................ATATTTTTGATCCGGATTAA...........................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TGGGTAGAAGAAAGCGTTT..............................................................................................................................	19	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................TTCGGTGCAATGTATGTAATTGGTA...........................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGTTTGTTTCCAAATGTTGGGAC.......................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................ATATCAAAATCGTCTTTTTTTTTGG................................................................................................................................................................................................................	25	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................ATATTTTTGATCCGGATTAAT..........................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................AGAAGAAAGCGTTTCGGATCATAGAAAG................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TACATATATATTTTTGATCCGGAT..............................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................ATATTTTTGATCCGGATT.............................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................GTTGGTACGTTTTTTCTA.............	18	2	2	1.00	2	2	0	0	0	0	0	0	0	0	0
...........................................................................................................GGTAGAAGAAAGCGTT...............................................................................................................................	16	0	13	0.54	7	0	0	0	0	0	0	0	0	7	0
.................ATATCAAGATCGTCTTTTCGTT...................................................................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TATATTTTTGATCCGG................................................................................	16	0	2	0.50	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................TTCGGATCACAGAAAGTG..............................................................................................................	18	2	3	0.33	1	0	0	0	0	0	1	0	0	0	0
..................TATCAAGATCGTCTTTTCATT...................................................................................................................................................................................................................	21	3	8	0.13	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................TGTAATTTGTAGAAGA......................................................................................................................................	16	1	8	0.13	1	0	0	0	0	0	0	0	0	0	1
................................TTTTTATTGTTTATATTCTATTTTA.................................................................................................................................................................................................	25	3	10	0.10	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................GGTAGAAGAAAGCGTTT..............................................................................................................................	17	0	12	0.08	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................GTAGAAGAAAGCGTT...............................................................................................................................	15	0	19	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................AGTTCTAAGTCCGACAAC..	18	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................GATCCTATTGCCTCGC...............................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................AAATCGTCTTGTTTTTGGGT...............................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0

AACGACAAATACTAACGTATAGTTTTAGCAGAAAAAAAAACAAATAAAGGATAAAATAACGAACATTTCATTTTCGAATATAATCTAAGCCACGTTACATACATTAACCATCTTCTTTCGCAAAGCCTAGTATCTTTCATATAGATACATGTATATATAAAAACTAGGCCTAATTATCCTTGCGTAACTAGGATAACGTCGCGGTCAAACAAAGGTTTACAACCCTGCAAACAAGATTGAGGGTGTTGGG *************************************************************************((((..(((.(((((((....(((((.....((.((((........))))))...))))).....)))))))..)))..)))).....*************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	M024 male body	O002 Head	SRR618934 dsim w501 ovaries	SRR902009 testis
.............................................................................................................................................................TAAAAACTAGGCCTAATTA..........................................................................	19	0	1	3.00	3	3	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACAACCCTGCAAACAAGAT.............	19	0	1	1.00	1	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................AACTAGGATAACGTCGCGGT.............................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
................................................................................................................................................................................................ATAACGTCGCGGTCAAACAAAGGTTT................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0
..................................................................................................................................................ACATGTATATATAAAAACTAGGCCTAATT...........................................................................	29	0	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................TATAAAAACTAGGCCTAATTA..........................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................................CATCTTCTTTCGCAAAGCCTAGTAT.....................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................ACAAGATTGAGGGTGTTG..	18	0	1	1.00	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................AGGATAACGTCGCGGTCAAACAAAGGT..................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0
..........................AGCAGCAAAAAAAACAA...............................................................................................................................................................................................................	17	1	16	0.06	1	0	0	0	0	0	0	0	1
.......................TTTTGCAGAAAAAAAA...................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	0	0	0	1
.........................................................................................................................................................TATAAAAAAACTAGGCCAAC.............................................................................	20	3	20	0.05	1	0	1	0	0	0	0	0	0
.............................AGAAAAAAAAACCAATA............................................................................................................................................................................................................	17	1	20	0.05	1	0	0	1	0	0	0	0	0
.........................AAGCAGAAAAAAAAACAAGTAT...........................................................................................................................................................................................................	22	3	20	0.05	1	0	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	4:495474-495723 -	dsi_12157	TTGCTGTTTATGA-------TTG-----------CA--------T-------ATCAAA--ATCGTCTTT---TTTTTTGT-------------------------------------T-----TATTTCCTAT-TTTATTGCTTGTA-------AAGTAAAAGCTTATAT----TAGATTCGGT-------GCAATGTATGTAATTGGTAGAAGAAAGCGTTTCGGATCATAGAAAGTATATCTATGTACATATATATTTTTGATCCG---GATTAATAGGAACGCATTGATCCTATTGC----------------------AGCGCCAGTTTGTTTCCAAATGTTGGGA------------CGTTTGTTCTAACTCCCACAACCC
droSec2	scaffold_67:139614-139875 -		TTTCTATAGAAAA-------TTG------------A--------GACGAGAATTGTAAGTAACGTATG------TCCTAT-------------------------------------T-----GAGTTTCTATATCCGTTACTCGTA-------GCTTA-AAGGGTATAC----CAAATTCGTT-------GA-AACTATGTAACAGGTAGACTGAAGCGTTTCCGACTATATAACAAATAT------------ATATTCTTAATCAA---AATCATTAG--CCGAGTTGATCAAGCTATAAAAGCAAAGAGGATGAGATTCAGCGTAAGTTTGTTGACACATGTTGCCA------------CGCCCACTCTAACGCCCACAAACC
dm3	chr4:683134-683395 -		TTTCTGTTCGTGATCATAAAT--AGATATTATTCAGTATAAGCAT-------ATAAAA--ATCGGCTTGCCGATTTTTGT-------------------------------------TTATTTCCTATATTATACCCATTACTTGTA-------AAGTAAAATCGTATATGTATTAGATTCGCT-------GCAATGTATGTAATTGGTAGAAGAAACCGTCTCCGATCATAGAAAGTATAT------------GTATG--TAATAGG---A----------ACGCATCGATCCCATTTTATAC---------------------TCACA--TGTTTCCAAATGTTTACA------------CGCTTGTTCTAACGACCACGAACC
droEre2	scaffold_4644:32501-32717 -		TTTGTTTTA---A-------TTC-----------AA--------T-------ATAAAAATATTGTCTTC---AT-------------------------------------------------CTCTTGTTATACCTGTTACTCGTA-------AAGTAAATGGGTATAC----TAGATGCGTT-------GAAAAGTATGTAACAGGTAAAAAGAAGCGTTTCCGATTATATAAAGTATAT------------ATGTTCTTGATCAG---TATCAATAG--CCGAGTCGATCTGGCCAT-------------------------GCCAGTCTGTCTG--TCCGTCTGTCTGAA--------CGTCTGTATGAAC-----------
droYak3	3L:21316424-21316651 -		TTATTATTAAATA-------TTA-----------TA--------C-------ATAAT------CAAC-------TCGTAT-------------------------------------T-----CCATTTTTATATCCGTTACTCGTA-------GAGTAAAAGGGTATAC----TAGATTCGTT-------GAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT------------ATATTCTTGATCAG---GATCAATAG--CCGAGTCGATCTGGCCAT-------------------------GTCAGTCTGTCCG--TCCGTCTGTCTGTC--------CGTCCGTATGAACGCTGAGATCTC
droEug1	scf7180000409148:16566-16782 +		TTGCATATTTTGA-------TTT-----------CT--------T-------ATAAA----ACGTTTTT---GA-------------------------------------------------ATGTTATTATACCCGGTACTCGTG-------GAGCAAAAAGGAATAT----TAGATTCGTT-------GAAAAGTATGTAACAGGTAGAAGGAAGCGTATCCGACCCTTTAAAGTATAT------------ATATTCTTGATCAG---GAGCAGGTC--CCTACGCA---------------------------------GCGCAAGTTTGTGACAGCATCCTGCCA------------AGCCCACTCTAACGCCCACAAATC
droBia1	scf7180000302432:833798-834029 -		TGTTCTTA----G-------TTG-----------CT--------T-------ATGAAAATACGGACTGC---TCATTGGTTCATTAA------------------------------------CATTGATTA-------TACTCGTA-------GAGTAAAAGGGCATAC----TATATTCGTC-------GAAAAGTATGTAACAGGTAGAAGGAGGCGTTTCCAAACCCATAAAGTATAT------------ATATTCTTGATCAGATGGATCACTAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTTTGTCCG--TCTGTCTGTC------------TGTCCGTATGAACGCTGATATCTC
droTak1	scf7180000415138:413786-414020 -		TTTGATTTT--------TATT--GCGTCCGATTCCAAAGA--------------------ATCATTTTA---ATAG-----------------------------------------------TCGTTTTTATACCCGTTACTCGTA-------GAGTAAAAGGGTATAT----TGTATTCGTG-------CAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATAT------------ATATTCTTGATCAG---GGTCACTAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCG--TCTGTCTGTCCGTC--------TGTCTGTCTGAA-TCTCAGAAACT
droEle1	scf7180000491104:667812-668016 -		AATCATTTT--------TTAT--G---------------------------------------AGCTTGC------TC-------------------------------------------G-TTCTTTTTATACCCGTTACTCGTA-------AAATAAAAGGGTATAT----TGAATTCGTT-------GAAAAGTATGTAACAGGTAAAAGGAAGCGCTTTCGACCATATAAAGTATAT------------ATACTCTTGATCAG---GATCAATAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCTG--TC--------------------CGTCTGTATGAACGTCGAGATCTC
droRho1	scf7180000764366:10024-10254 -		TTTTCATTTG-GC-------GTG-----------CA--------T-------CTGGAATTATCGTATTT---ATTTT----------------------------------------------CGTTAATTATACCCGATACTCGTA-------GAGTAAAAGGGTATAT----TGTATTCGTG-------CAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----------ATATATTCTTGTTCAG---GATCACTAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCG--TCTGTCTGTC------------TGTCCGTATGAACGCTGAGATCTC
droFic1	scf7180000453948:2697352-2697490 +		TT------------------------------------------------------------------------------------------------------------------------------------------ACTTGTA-------GAGTAAAAGGGTATAC----TGCATTTGTT-------GAAAAGAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATAGAGAATTT------------ATATTTTTGATCAG---AATCATAGG--ACGACTCGATCTATGTCT-------------------------GTACCTTTTTGT-------------------------------------------------
droKik1	scf7180000302766:12409-12568 +		CTTT----------------------------------------------------------------------------------------------------------------------------TTTATACCC--------------------TTGCAGGGTATTA----TAATTTCAGT-------CAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT------------ATATTCTTGATCAG---CATCAACAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCA--TCCGTCTGTCCGTC--------TGTCC-------------------
droAna3	scaffold_12943:355582-355719 -		T-------------------------------------------------------------------------------------------------------------------------------------------ACTCGTA-------AAGTAAAAGGGTATAT----TGTATTCGTC-------TGAATGTATGTAACAGGGAGAAGGAACCATCTCCGACGACATAAAGTATGT------------ATATTCTTGATCAG---CATCAACAG--CATAGTCGATATAGCCAT-------------------------GTCAGTCTGTCT-------------------------------------------------
droBip1	scf7180000396615:20641-20781 -		TTTTTGTTGTTT-------------------------------------------------------------A-------------------------------------------------TTTTTATTATACCCGAAATTCGT---------------AGTGTATAT----TTTATTCGTG-------TGAATGTATGTACGTACGAGAAGGAATTATCTCCAACCCCATAAAGTATATACATACATATATGTATTATTGATTAG---CATCAACAG----------------------------------------------------------------------------------------------------------
dp5	XR_group6:9486347-9486492 +		T-------------------------------------------------------------------------------------------------------------------------------------------ACTTAAA-------GAGTATAAAGTTATAT----TAGATTTGTGGTGGAAGTGGATGTGTTTAACACCCAGAAAAAAGCGTTTTCGACCACATAAAATATATCTA--GATATATATATTCTTGGTCAT---CATCC-----------------------------------------------------ATCTGTCCT--TCTGGG----------------CGCCTGTTTG--------------
droPer2	scaffold_19:1153126-1153309 +		TTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------AATTAATATCT----T----TACATTTCAG-------TGGATGTGCGTAGCGCCCAGAAGAAAGCGTTTTCAACCCCATAAAGTACATATGTATGTATATATATTCTTGATCAG---TATCAATAG--CCGAGTCGACTGAGCCAT-------------------------GTCTGTTTGTCAG--TCTGAATGTTCGTCTTGTTAAGCGTCTTTTTTTACTCCTA------
droWil2	scf2_1100000005967:11-244 +		TTGCTAATTGCGTT--TGAAT-------------------------------A----AATATTTTCC--------TTTAT-------------------------------------TTTTGTACTTTATTATACCATACACCCATA-------GGGTGAAATGGTATAT----TAAAGTCGCC-------AAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATAT------------ATATTCTTGATCAG---GATCAACAA--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCG--TCCGTCCGTCCGTC--------TGTCCGTATGAACACCTAGATCTC
droVir3	scaffold_13049:25006418-25006649 +		TGTACCCCT---------------------------------------------------------------------------TACCAATGATTATAATAATCTTATAAAACTGTT----T-TTATATTTATACCCTGAACCCATTAAAAAT-GGGTATAAGGGTATAT----TGTATCTGTGCGAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATAT--------ATGTATATTCTTGATCAG---CATCAATAG--CCGAGGCGATCTTGCCAT-------------------------GTCCGTCTGTCTG--TCCG--------------------TATGTATGAACGT---------
droMoj3	scaffold_6500:7810274-7810494 +		TTAACATTTA-AA-------TTG-----------TA--------C-------ATTAT--TATTATTATT---AT-------------------------------------------------TTTTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAA----TGGTTTTGTT-------GAAATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATAT------------ATATTCTTGATCAG---GGCGACGAG--CTGAGTCGATTTGGCCCT-------------------------GTCCGTCTGTCTG--TCTGTCCGTCTGTC--------CGTATGTTTG--------------
droGri2	scaffold_15110:14054344-14054531 -		TTGTTGTTGCT------------------------------------------------------C----CTGTTGTT-------------------------------------------G-TTCTTTTTATAGCCTGAACCCATTAAAATTGGCTAAAAAGGGTATAA----TGG-TTTGTG-------CATATGTATGTGACAGGCAGAAGGAAGCATCTCCGATCTTGTAAAGTATAT----------ATATATTCTTGATCAG---GGTCAACAG--ACGAGGTGATTTAGCATT-------------------------GTCTGTCTGTTTG----------------------------------AAAA----------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTGCTGTTTATGA-------TTG-----------CA--------T-------ATCAAA--ATCGTCTTT---TTTTTTGT-------------------------------------T-----TATTTCCTAT-TTTATTGCTTGTA-------AAGTAAAAGCTTATAT----TAGATTCGGT-------GCAATGTATGTAATTGGTAGAAGAAAGCGTTTCGGATCATAGAAAGTATATCTATGTACATATATATTTTTGATCCG---GATTAATAGGAACGCATTGATCCTATTGC----------------------AGCGCCAGTTTGTTTCCAAATGTTGGGA------------CGTTTGTTCTAACTCCCACAACCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............A-------TTG-----------CA--------T-------ATCAAA--ATCGTCTT..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................TCGGT-------GCAATGTATGTAATTGGTAGA..............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATATTTTTGATCCG---GATTAA.............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................TTCGGT-------GCAATGTATGTAATTGGTA................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGTTTGTTTCCAAATGTTGGGA------------C.......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................A--------T-------ATCAAA--ATCGTCTTT---TTTTTTGG-------------------------------------.............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATATTTTTGATCCG---GATTAAT............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................AGAAGAAAGCGTTTCGGATCATAGAAAG.....................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TACATATATATTTTTGATCCG---GAT................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................ATATTTTTGATCCG---GATT...............................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GGTAGAAGAAAGCGTT....................................................................................................................................................................	16	13	0.54	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TATATTTTTGATCCG---G..................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GGTAGAAGAAAGCGTTT...................................................................................................................................................................	17	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................GTAGAAGAAAGCGTT....................................................................................................................................................................	15	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTTCTATAGAAAA-------TTG------------A--------GACGAGAATTGTAAGTAACGTATG------TCCTAT-------------------------------------T-----GAGTTTCTATATCCGTTACTCGTA-------GCTTA-AAGGGTATAC----CAAATTCGTT-------GA-AACTATGTAACAGGTAGACTGAAGCGTTTCCGACTATATAACAAATAT------------ATATTCTTAATCAA---AATCATTAG--CCGAGTTGATCAAGCTATAAAAGCAAAGAGGATGAGATTCAGCGTAAGTTTGTTGACACATGTTGCCA------------CGCCCACTCTAACGCCCACAAACC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................................................................................................................................................TGTTGCCA------------CGCCCACTCTAACGCC........	24	20	0.05	1	1	0	0	0

dm3

TTTCTGTTCGTGATCATAAAT--AGATATTATTCAGTATAAGCAT-------ATAAAA--ATCGGCTTGCCGATTTTTGT-------------------------------------TTATTTCCTATATTATACCCATTACTTGTA-------AAGTAAAATCGTATATGTATTAGATTCGCT-------GCAATGTATGTAATTGGTAGAAGAAACCGTCTCCGATCATAGAAAGTATAT------------GTATG--TAATAGG---A----------ACGCATCGATCCCATTTTATAC---------------------TCACA--TGTTTCCAAATGTTTACA------------CGCTTGTTCTAACGACCACGAACC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................TTAGATTCGCT-------GCAATGTATG.........................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TATTATTCAGTATAAGCAT-------A.............................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTCTGTTCGTGATCATAAAT--...........................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................A----------ACGCATCGATCCCATTTTAT....................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTATTAGATTCGCT-------GCAATGT............................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ACCGTCTCCGATCATAGAAAG.....................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................AATGTATGTAATTGGTAGA..............................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TATTCAGTATAAGCAT-------ATAAA.........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ATAT------------GTATG--TAATAGG---A----------ACG.....................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AGTATAAGCAT-------ATAAAA--ATCG..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTCGTGATCATAAAT--AGATA......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTTGTTTTA---A-------TTC-----------AA--------T-------ATAAAAATATTGTCTTC---AT-------------------------------------------------CTCTTGTTATACCTGTTACTCGTA-------AAGTAAATGGGTATAC----TAGATGCGTT-------GAAAAGTATGTAACAGGTAAAAAGAAGCGTTTCCGATTATATAAAGTATAT------------ATGTTCTTGATCAG---TATCAATAG--CCGAGTCGATCTGGCCAT-------------------------GCCAGTCTGTCTG--TCCGTCTGTCTGAA--------CGTCTGTATGAAC-----------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TTATTATTAAATA-------TTA-----------TA--------C-------ATAAT------CAAC-------TCGTAT-------------------------------------T-----CCATTTTTATATCCGTTACTCGTA-------GAGTAAAAGGGTATAC----TAGATTCGTT-------GAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT------------ATATTCTTGATCAG---GATCAATAG--CCGAGTCGATCTGGCCAT-------------------------GTCAGTCTGTCCG--TCCGTCTGTCTGTC--------CGTCCGTATGAACGCTGAGATCTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................TCTGTC--------CGTCCGTATGAACGCTGAGA....	26	20	1.10	22	0	0	0	0	0	0	0	0	0	0	22
..........................................................................................................................................................................................................................................................................................................................................TCTGTCCG--TCCGTCTGTCTGTC--------CGTC....................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCAGTCTGTCCG--TCCGTCTGTCTGTC--------C.......................	27	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGTCCG--TCCGTCTGTCTGTC--------CG......................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GCCAT-------------------------GTCAGTCTGTCCG--TCCGTCTG......................................	26	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................TT-------GAAAAGTATGTAACAGGCAGAAG............................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGTCCG--TCCGTCTGTCTGTC--------........................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATAC----TAGATTCGTT-------GAAAAG.............................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0

droEug1

TTGCATATTTTGA-------TTT-----------CT--------T-------ATAAA----ACGTTTTT---GA-------------------------------------------------ATGTTATTATACCCGGTACTCGTG-------GAGCAAAAAGGAATAT----TAGATTCGTT-------GAAAAGTATGTAACAGGTAGAAGGAAGCGTATCCGACCCTTTAAAGTATAT------------ATATTCTTGATCAG---GAGCAGGTC--CCTACGCA---------------------------------GCGCAAGTTTGTGACAGCATCCTGCCA------------AGCCCACTCTAACGCCCACAAATC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTTCTTA----G-------TTG-----------CT--------T-------ATGAAAATACGGACTGC---TCATTGGTTCATTAA------------------------------------CATTGATTA-------TACTCGTA-------GAGTAAAAGGGCATAC----TATATTCGTC-------GAAAAGTATGTAACAGGTAGAAGGAGGCGTTTCCAAACCCATAAAGTATAT------------ATATTCTTGATCAGATGGATCACTAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTTTGTCCG--TCTGTCTGTC------------TGTCCGTATGAACGCTGATATCTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTGATTTT--------TATT--GCGTCCGATTCCAAAGA--------------------ATCATTTTA---ATAG-----------------------------------------------TCGTTTTTATACCCGTTACTCGTA-------GAGTAAAAGGGTATAT----TGTATTCGTG-------CAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATAT------------ATATTCTTGATCAG---GGTCACTAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCG--TCTGTCTGTCCGTC--------TGTCTGTCTGAA-TCTCAGAAACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATCATTTT--------TTAT--G---------------------------------------AGCTTGC------TC-------------------------------------------G-TTCTTTTTATACCCGTTACTCGTA-------AAATAAAAGGGTATAT----TGAATTCGTT-------GAAAAGTATGTAACAGGTAAAAGGAAGCGCTTTCGACCATATAAAGTATAT------------ATACTCTTGATCAG---GATCAATAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCTG--TC--------------------CGTCTGTATGAACGTCGAGATCTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTTCATTTG-GC-------GTG-----------CA--------T-------CTGGAATTATCGTATTT---ATTTT----------------------------------------------CGTTAATTATACCCGATACTCGTA-------GAGTAAAAGGGTATAT----TGTATTCGTG-------CAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT----------ATATATTCTTGTTCAG---GATCACTAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCG--TCTGTCTGTC------------TGTCCGTATGAACGCTGAGATCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TT------------------------------------------------------------------------------------------------------------------------------------------ACTTGTA-------GAGTAAAAGGGTATAC----TGCATTTGTT-------GAAAAGAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATAGAGAATTT------------ATATTTTTGATCAG---AATCATAGG--ACGACTCGATCTATGTCT-------------------------GTACCTTTTTGT-------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTTT----------------------------------------------------------------------------------------------------------------------------TTTATACCC--------------------TTGCAGGGTATTA----TAATTTCAGT-------CAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT------------ATATTCTTGATCAG---CATCAACAG--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCA--TCCGTCTGTCCGTC--------TGTCC-------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

T-------------------------------------------------------------------------------------------------------------------------------------------ACTCGTA-------AAGTAAAAGGGTATAT----TGTATTCGTC-------TGAATGTATGTAACAGGGAGAAGGAACCATCTCCGACGACATAAAGTATGT------------ATATTCTTGATCAG---CATCAACAG--CATAGTCGATATAGCCAT-------------------------GTCAGTCTGTCT-------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................ATATTCTTGATCAG---CATCAACAG--C.......................................................................................................	24	8	0.13	1	0	1	0	0	0	0

droBip1

TTTTTGTTGTTT-------------------------------------------------------------A-------------------------------------------------TTTTTATTATACCCGAAATTCGT---------------AGTGTATAT----TTTATTCGTG-------TGAATGTATGTACGTACGAGAAGGAATTATCTCCAACCCCATAAAGTATATACATACATATATGTATTATTGATTAG---CATCAACAG----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

T-------------------------------------------------------------------------------------------------------------------------------------------ACTTAAA-------GAGTATAAAGTTATAT----TAGATTTGTGGTGGAAGTGGATGTGTTTAACACCCAGAAAAAAGCGTTTTCGACCACATAAAATATATCTA--GATATATATATTCTTGGTCAT---CATCC-----------------------------------------------------ATCTGTCCT--TCTGGG----------------CGCCTGTTTG--------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................ATTTGTGGTGGAAGTGGATGT............................................................................................................................................................................................	21	8	0.63	5	0	2	0	0	0	1	2	0	0	0
..................................................................................................................................................................................TTTGTGGTGGAAGTGGATGTG...........................................................................................................................................................................................	21	10	0.30	3	0	2	0	1	0	0	0	0	0	0
..................................................................................................................................................................................TTTGTGGTGGAAGTGGATGT............................................................................................................................................................................................	20	11	0.27	3	0	1	0	0	1	1	0	0	0	0
....................................................................................................................................................................................TGTGGTGGAAGTGGATGTG...........................................................................................................................................................................................	19	11	0.18	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................T----TAGATTTGTGGTGGAAGTGG................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTTGTGGTGGAAGTGGATG.............................................................................................................................................................................................	19	15	0.13	2	0	1	0	0	0	0	1	0	0	0
...............................................................................................................................................................................AGATTTGTGGTGGAAGTGGA...............................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTTGTGGTGGAAGTGGATGTGT..........................................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................TGTGGTGGAAGTGGATGTGT..........................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTTGTGGTGGAAGTGGATGTGTC.........................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................GTGGTGGAAGTGGATGTGT..........................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTGTGGTGGAAGTGGATG.............................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTTGTGGTGGAAGTGGAT..............................................................................................................................................................................................	18	18	0.06	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------AATTAATATCT----T----TACATTTCAG-------TGGATGTGCGTAGCGCCCAGAAGAAAGCGTTTTCAACCCCATAAAGTACATATGTATGTATATATATTCTTGATCAG---TATCAATAG--CCGAGTCGACTGAGCCAT-------------------------GTCTGTTTGTCAG--TCTGAATGTTCGTCTTGTTAAGCGTCTTTTTTTACTCCTA------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................TTGATCAG---TATCAATAG--CCGAGTCGA...............................................................................................	26	19	0.26	5	0	5	0	0	0	0
....................................................................................................................................................................................................................................................................TTGATCAG---TATCAATAG--CCGAGTCG................................................................................................	25	19	0.26	5	0	5	0	0	0	0
....................................................................................................................................................................................................................................................................TTGATCAG---TATCAATAG--CCGAGTC.................................................................................................	24	19	0.21	4	0	4	0	0	0	0
..................................................................................................................................................................................................................................................................TCTTGATCAG---TATCAATAG--CCGAGT..................................................................................................	25	17	0.18	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................TCTTGATCAG---TATCAATAG--CCGAGTC.................................................................................................	26	17	0.12	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................CAATAG--CCGAGTCGACTGAGCCAT-------------------------.............................................................	24	9	0.11	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................TCTTGATCAG---TATCAATAG--CCGAGTCGA...............................................................................................	28	17	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................TCTTGATCAG---TATCAATAG--CCGAGTCG................................................................................................	27	17	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................TCTTGATCAG---TATCAATAG--CCGAG...................................................................................................	24	19	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................TCTTGATCAG---TATCAATAG--CCG.....................................................................................................	22	19	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................CTTGATCAG---TATCAATAG--CCGAG...................................................................................................	23	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................TTGATCAG---TATCAATAG--CCGA....................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droWil2

TTGCTAATTGCGTT--TGAAT-------------------------------A----AATATTTTCC--------TTTAT-------------------------------------TTTTGTACTTTATTATACCATACACCCATA-------GGGTGAAATGGTATAT----TAAAGTCGCC-------AAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATAT------------ATATTCTTGATCAG---GATCAACAA--CCGAGTCGATCTAGCCAT-------------------------GTCCGTCTGTCCG--TCCGTCCGTCCGTC--------TGTCCGTATGAACACCTAGATCTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................ACAGGCAGAAGGAAGCATCTC..................................................................................................................................................................	21	20	0.55	11	0	0	0	6	5
...........................................................................................................................................................................................................................................................................................................T-------------------------GTCCGTCTGTCCG--TCCGTCC.......................................	21	20	0.45	9	0	9	0	0	0
.................................................................................................................................................................................................................................................................................TCAACAA--CCGAGTCGATCTAGCCAT-------------------------GT...........................................................	27	20	0.40	8	0	0	0	8	0
.......................................................................................................................................................................................................................................................................................A--CCGAGTCGATCTAGCCAT-------------------------GTCCGT.......................................................	25	20	0.25	5	0	5	0	0	0
.......................................................................................................................................................................................C-------AAAATGTATGTAACAGGCAG...............................................................................................................................................................................	21	20	0.25	5	0	5	0	0	0
....................................................................................................................................................................................................GTATGTAACAGGCAGAAGGA..........................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
.............T--TGAAT-------------------------------A----AATATTTTCC--------TTTAT-------------------------------------T............................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	1	0
........TGCGTT--TGAAT-------------------------------A----AATATTTTCC--------TTTAT-------------------------------------.............................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	1	0
..........CGTT--TGAAT-------------------------------A----AATATTTTCC--------TTTAT-------------------------------------.............................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0
..............................................................................................................................TTATTATACCATACACCCATA-------GGG.....................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGTCCG--TCCGTCCGTCCGTC--------TGTCCG..................	26	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTCCGACC.............................................................................................................................................................	27	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTC--------TGTCCGTAT...............	20	20	0.10	2	0	2	0	0	0
................................................................................................................................................................................AAGTCGCC-------AAAATGTATGTAAC.....................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
.............................................................................................................................................................................................................................................TATAT------------ATATTCTTGATCAG---GATCAACA...........................................................................................................	27	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCG--TCCGTCCGT.....................................	22	20	0.05	1	1	0	0	0	0
................................................................................................................................................................AATGGTATAT----TAAAGTCGCC-------A..................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................AA--CCGAGTCGATCTAGCCAT-------------------------GTCCGTC......................................................	27	20	0.05	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................TGTCCG--TCCGTCCGTCCGTC--------TGTCCGT.................	27	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................ATAT----TAAAGTCGCC-------AAAATGTATGT........................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................CTTGATCAG---GATCAACAA--CCGAGT..................................................................................................	24	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................A--CCGAGTCGATCTAGCCAT-------------------------GTCCG........................................................	24	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................CCACAAAGTATAT------------ATATTCTT............................................................................................................................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCAT.....................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................ACAA--CCGAGTCGATCTAGCCAT-------------------------GTCCGT.......................................................	28	20	0.05	1	0	0	1	0	0
.....................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATCTC..................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TCTGTCCG--TCCGTCCGTCCGTC--------........................	22	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................CCGTCCGTCCGTC--------TGTCCGTATGA.............	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................C-------AAAATGTATGTAACAGGCAGAAG............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0

droVir3

TGTACCCCT---------------------------------------------------------------------------TACCAATGATTATAATAATCTTATAAAACTGTT----T-TTATATTTATACCCTGAACCCATTAAAAAT-GGGTATAAGGGTATAT----TGTATCTGTGCGAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATAT--------ATGTATATTCTTGATCAG---CATCAATAG--CCGAGGCGATCTTGCCAT-------------------------GTCCGTCTGTCTG--TCCG--------------------TATGTATGAACGT---------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGA..........................................................................................................................................................................	27	20	6.20	124	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	124	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCATC....................................................................................................................................................................	26	20	3.95	79	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGA..............................................................................................................................................................................	23	20	1.50	30	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAG........................................................................................................................................................................	22	20	1.10	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TCAATAG--CCGAGGCGATCTTGCCAT-------------------------G............................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAA.............................................................................................................................................................................	24	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATATTCTTGATCAG---CATCAATAG--CC......................................................................................................	25	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTAAAAAT-GGGTATAAGGGTATAT----T...................................................................................................................................................................................................................	25	20	0.60	12	0	0	0	0	0	0	0	2	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATATTCTTGATCAG---CATCAATAG--C.......................................................................................................	24	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTAAAAAT-GGGTATAAGGGTATAT----TG..................................................................................................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATC....................................................................................................................................................................	24	20	0.35	7	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TT----T-TTATATTTATACCCTGAACCCAT................................................................................................................................................................................................................................................	26	6	0.33	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGAA.........................................................................................................................................................................	28	20	0.30	6	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTAAAAAT-GGGTATAAGGGTATAT----TGT.................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTAAAAAT-GGGTATAAGGGT............................................................................................................................................................................................................................	20	20	0.25	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAG........................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GGCAGAAGGAAGCATCTCCG................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................T-TTATATTTATACCCTGAACCCATTAAA............................................................................................................................................................................................................................................	28	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTCTTGATCAG---CATCAATAG--CCGAGG..................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AT-GGGTATAAGGGTATAT----TGTAT...............................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTCC.................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TCCGACCCCATAAAGTATAT--------ATGTAT..................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGTAACAGGCAGAAGGAAG........................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATCTCC.................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AT-GGGTATAAGGGTATAT----TGTATC..............................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................ACCCTGAACCCATTAAAAAT-GGGTATAAG...............................................................................................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................ATTCTTGATCAG---CATCAATAG--........................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATCCAAATGTATGTAACAGGCAGA..............................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGC.......................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................TATATTTATACCCTGAACCCATTAAAAA..........................................................................................................................................................................................................................................	28	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................ATTAAAAAT-GGGTATAAGGGTAT..........................................................................................................................................................................................................................	23	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................TCCAAATGTATGTAACAGG..................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGACC.............................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GATCTTGCCAT-------------------------GTCCGTCTGT...................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GAAGGAAGCATCTCCGACC.............................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AT-GGGTATAAGGGTATAT----TGTATCC.............................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TAACAGGCAGAAGGAAGCA......................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGTAACAGGCAGAAGGAA.........................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TATTCTTGATCAG---CATCAATAG--........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCGAAATCCAAATGTATGTA.......................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................T-------------------------GTCCGTCTGTCTG--TCCG--------------------TATGA.................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTC..................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TGTGCGAAATCCAAATGTATGTAACAGG..................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GTATGTAACAGGCAGAAGG...........................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TTGATCAG---CATCAATAG--CCG.....................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGGA..........................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................ATTAAAAAT-GGGTATAAGGGTATAT----....................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GTCTGTCTG--TCCG--------------------TATGTATGA.............	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TAAAAAT-GGGTATAAGGGTATAT----TG..................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATATTCTTGATCAG---CATCAATAG--CCGA....................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGAAG........................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TGTATATTCTTGATCAG---CATC...............................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TATTCTTGATCAG---CATCAATAG--CCG.....................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TTGATCAG---CATCAATAG--CCGAG...................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGG...........................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GTATATTCTTGATCAG---CATCAATAG--........................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TGAACCCATTAAAAAT-GGGTATAAGGGT............................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CTTGATCAG---CATCAATAG--CC......................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGC.......................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCCAAATGTATGTAACAGGCA................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTAAAAAT-GGGTATAAGGGTA...........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGG...........................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................CGAAATCCAAATGTATGTAAC.....................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCAAATGTATGTAACAGGCAG...............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCTG--TCCG--------------------TATGT.................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCTG--TCCG--------------------TAT...................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTC..................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTAACATTTA-AA-------TTG-----------TA--------C-------ATTAT--TATTATTATT---AT-------------------------------------------------TTTTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAA----TGGTTTTGTT-------GAAATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATAT------------ATATTCTTGATCAG---GGCGACGAG--CTGAGTCGATTTGGCCCT-------------------------GTCCGTCTGTCTG--TCTGTCCGTCTGTC--------CGTATGTTTG--------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................ATGTAACAGGCAGAAGGAGG........................................................................................................................................................................	20	20	0.35	7	7	0	0	0	0	0
........................................................................................................................................................TGGGAAATCAGGGTATAA----TGGTTTT.............................................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	5	0
...............................................................................................................................................................................................................................................TAT------------ATATTCTTGATCAG---GGCG...............................................................................................................	21	20	0.15	3	0	0	0	0	0	3
.................................................................................................................................................................................................................AGAAGGAGGCGTGGCAGACCCC...........................................................................................................................................................	22	20	0.10	2	0	1	0	0	0	1
....................................................................T---AT-------------------------------------------------TTTTTTTTATACCCTGAACCCAT................................................................................................................................................................................................................................................	26	16	0.06	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AGGCGTGGCAGACCCCACAAA......................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................ATGGGAAATCAGGGTATAA----TGGTT...............................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................TTGATCAG---GGCGACGAG--CTGAGTCG................................................................................................	25	20	0.05	1	0	0	0	0	0	1
...................................A--------C-------ATTAT--TATTATTATT---AT-------------------------------------------------T......................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CCT-------------------------GTCCGTCTGTCTG--TCTG..........................................	20	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................GTAACAGGCAGAAGGAGGC.......................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AG---GGCGACGAG--CTGAGTCGA...............................................................................................	20	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................ATTGAAAATGGGAAATCAGGGT............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................TCAGGGTATAA----TGGTTTTGTT-------GAA................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................GTAACAGGCAGAAGGAGGCGTGGC..................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droGri2

TTGTTGTTGCT------------------------------------------------------C----CTGTTGTT-------------------------------------------G-TTCTTTTTATAGCCTGAACCCATTAAAATTGGCTAAAAAGGGTATAA----TGG-TTTGTG-------CATATGTATGTGACAGGCAGAAGGAAGCATCTCCGATCTTGTAAAGTATAT----------ATATATTCTTGATCAG---GGTCAACAG--ACGAGGTGATTTAGCATT-------------------------GTCTGTCTGTTTG----------------------------------AAAA----------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_12157

4:495524-495673 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.8	-16.5	-16.1