dsi_12144

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

TACTCTTTTGTTGTTAATTGTCCAGCTGCCCGCCTGCGAATGATAATAATGTGAGTTGGCCCGCTGAAAGTTGGTGCGTTTTCCACTGCTGCGCTTTTTTCTCCTCTGTTTGTAACAAATGGAATAGTTTACAACAAAATGCGCAAAATTAGTTAAGGATACTTCGTTTGTTGTGTGTGTGTGTGTGTGTGGGTGGCAGCTGCGTAAATGCGTAAGCTGCGTCGCGTTTGTGTGAGTGTGTGTGTGTTGG ********************************************************.......(((((..(((((((........)).))))).)))))...((((((((...))))))))......((((((((...(((...........(((....)))))))))))))).....********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
....................................................................................................................................................................................................................TAAGCTGCGTCGCGTTTGTGTGAG..............	24	0	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................TACTTCGTTTGTTGTGTGTGT......................................................................	21	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................TCTGCTTGTAACAAATGGAAT.............................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0
..............................................................................................................................................................................................................AATGCGTAAGCTGCGTCGCGTTTG....................	24	0	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................GTCGCGTTTGTTTGAGTG............	18	1	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................TACTTCGTTTGTTGTGTGTG.......................................................................	20	0	1	1.00	1	1	0	0	0	0	0
..........................................................GCCCGCTGAAAGTTGGTG..............................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................TAGTTTACAACAAAATGCGCAAAA......................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................AAATGCGTAAGCTGCGTCGCGTTTGTG..................	27	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................AAAATTACTTAAGGATA.........................................................................................	17	1	3	0.33	1	0	0	0	0	1	0
...............................................................................................................................................................................TGTGTGTGTGTGTGTGGGT........................................................	19	0	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................................................................GCTGCGGATATGCGTAAGCA................................	20	3	12	0.08	1	0	0	1	0	0	0
.................................................................................................................................................................CTTCGTTGGTTGTGT..........................................................................	15	1	19	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................TGTGTGTGTGTGTGGGTG.......................................................	18	0	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................TGTTGTGTGTGTGTGTGTGT..............................................................	20	0	20	0.05	1	0	0	0	0	0	1

ATGAGAAAACAACAATTAACAGGTCGACGGGCGGACGCTTACTATTATTACACTCAACCGGGCGACTTTCAACCACGCAAAAGGTGACGACGCGAAAAAAGAGGAGACAAACATTGTTTACCTTATCAAATGTTGTTTTACGCGTTTTAATCAATTCCTATGAAGCAAACAACACACACACACACACACACCCACCGTCGACGCATTTACGCATTCGACGCAGCGCAAACACACTCACACACACACAACC ********************************************************************.......(((((..(((((((........)).))))).)))))...((((((((...))))))))......((((((((...(((...........(((....)))))))))))))).....********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	GSM343915 embryo
...................................................ACTCGACCGGGCGAATCTCAA..................................................................................................................................................................................	21	3	4	0.50	2	2	0	0	0
............................................................................................................................................................................................................AATTACGCAATCGACGCAGT..........................	20	3	6	0.17	1	0	1	0	0
..................................................................................................................................................................AAACAAACAACACACACACAAAC.................................................................	23	2	9	0.11	1	0	0	1	0
..............................................................................................................................................................................................................TTATGCAATCGACGCAG...........................	17	2	11	0.09	1	0	1	0	0
..............................................................................................................................................................................................................TTACGCAATCGACGC.............................	15	1	13	0.08	1	0	1	0	0
.............................................................................................................................................................................................ACCCACCGGCCACGTATTTA.........................................	20	3	19	0.05	1	0	0	0	1
..............................................................................................................................CAAATGTTGTTTTAG.............................................................................................................	15	1	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	node_24415:78945-79194 -	dsi_12144	TACTCTTTTGTTGTTAATTGTCCAGCTGCCCGCCTGCGAATGATAATAATGTGAGTTGGCC---CGCTGAAAGTTGGTGCGTTTTCCACTGCTGCGCTTTTTTCTCCTCTGTTTGTAACAAATGGAATAGTT-----------TACAACAAAATGCGCAAAATTAGTTAAGGATACTTCGTTTGT-TG-----------------------------TGTGTGTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGC------------------GTTTGTGTGAGTGTGTGTGTG----TTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_20:295993-296232 +		-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGTTTGT----------------------------------------TGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGC------------------GTTTGTGTGAGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCG-CTCTTCCTGTTT----C------------------ACG-C----G--TT-TACTCTCTT--CTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGCTTTGTTA----TGTTTGGTACTTTTGC---------------------------------------------------------------
dm3	chrX:13657228-13657475 +		-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGGTTGT-C-------------------------------GTGTGTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGC------------------GTTTGTGTAAGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCG-CTCTTCCTGTTT----C------------------ACG-C----T--TT-TGCTCTCTT--TTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTA----TGTTTGGTACTTTTGC---------------------------------------------------------------
droEre2	scaffold_4690:13226660-13226876 -		-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGGGTGTTTGTGTATATG---------------------TGTGTGTGTGTGTG-------------------GGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGA------------------GTTTGTGTATGTGTGTGTGTG----T-----------CAAA--TCAAGGTCCCGTTAGCT------CT------------------------------------------------------------TGCTCTCTT--CTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGCAAAGCCTTGTT-TGTTG----TGTTTCGGACTTTTGC---------------------------------------------------------------
droYak3	X:7950133-7950370 +		-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGTTAG-------------------------------------TTTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGT------------------GTTTGTGAAAGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------AT-----AGCT-ATCTTCCTCTTC----C------------------ACG-C----T--TT-TACTCTATT--CTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTG----TGTTTGTGACTTTGGC---------------------------------------------------------------
droEug1	scf7180000409008:78512-78762 +		-G---------------------------------------GATAACGGT-------------------------------------------------------------------------------------------------------------------------------------GTTAG-----------------------------TATGTGCCTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTCTGTATA-----------------TGTATGTGCCTGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCA---GCTCTCAGCCATCT-CTCTTCCTCTTT----A------------------ACG-C----T--TT-TGCTCTCTT--CGCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGCAAAGCTTTGTTTTGTTT----TGTTTGGT-TTTTCGC---------------------------------------------------------------
droBia1	scf7180000302041:684654-684906 +		-G---------------------------------------GATAACGGT-------------------------------------------------------------------------------------------------------------------------------------G----TGAGTGTG---------------------TGTGTGTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTGGC------------------GTATGTGT--GTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCT-CTCCTGCTGCCC----C------------------ACT-C----T--GC-TGCTCTCTT--CTCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATGTTCACGTTAAGCTTTGTTTTGCTTTATTTGTTTGGG-TTTTCGC---------------------------------------------------------------
droTak1	scf7180000414562:501822-502056 -		-G---------------------------------------GATAACGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGTGAGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTTGC------------------GTATGTCT--GCGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCT-CTCTTCC-GCCT----C------------------AC-------T--TT-TGCTCTCCT--CTCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTT----TGTTTGGG-TTTCAG----------------------------------------------------------------
droEle1	scf7180000491249:2176625-2176867 +		-T---------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTCCTATCCCCTGTGTGCCTTGT--------------------GGGTGGTTTGTAGCTG--CTCTGCGTAAATGCGTAAGCTGCGTTGT------------------GTGTG----TGTGCGTGCGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTTTCTCAC------------TTG----C------------------AAG-C----T--T--TTCTCTCTT--CTTCACAC-----------------------AACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTT----TGTTTGGG-TTTTCGC---------------------------------------------------------------
droRho1	scf7180000777352:34291-34580 -		-T---------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------GTGGGTGGG---------------------GGTGTGTGTGTGTT-------------------TGT--------------------GGGTG----GTAGCTG--CTCTGCGTAAATGCGTAAGCTGCGTTGC------------------GTGAG----TGTGCGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCTC--------------TTG----C------------------ACG-C----T--TTCTTCTCTCTT--CTCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCATAATTTTCACGTAAAGCTTTGTTTTGTT---------TGGG-TTTACGCATTTTCGTGATTTTAGTTTTTGTGAAGTGACATATTTACTTTTTTATTTTTGGCTTTTTATCT
droFic1	scf7180000454073:1311491-1311731 -		-G---------------------------------------GATAACAGT---------------------------------------------------------------------------------------------------------------------------------G-------------------------------------TTTGTGAGTGTGTG-------------------TGT--------------------GGGTG----GTTGCTG--CTCTGCGTAAATGCGTAAGCTGCGTTGC------------------GTGTG------TGTGCGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCC------CTCTCCTACCT-CTCA-------------------------------ACG-CGCTTT--TT-TGCTCTCTT--CTCTAAACA--------------------ACAACAA---GTCTG------TGATAAGATTTTTCCATGCGTAATTTTCTCGTAAAGCCTTGTTTTGTTT----T----GGG-TTTTCGCAGCTTTGT-------------------------------------------------------
droKik1	scf7180000302344:216429-216745 +		-G---------------------------------------GATAACGGT-GCAGCT----------------------------------------------------------------------------------------------------------------------CTTCATCTGT-TGTGTGTGGGTGTAGATATAGCCCCTATATCTGTTTGTGTGTGTG-------------------TG-----------------------------------TGCG-------TAAATGCGTAAGCTGCGTTGTGCATGTGCC----------TCTGTGTGAGTGTGTG--TGGTGGCTGGCTGTGG-CCAGGTCCCAAGGTTCC---CGCCCCCT--TTCTC-CATCACCTACTCC-GCCTGTGCCACAGACTGTCCTTCCCTACCGCC----T--TC-TGCTCTCTCTTTGCCAACTAGCAGAGCCCCGTCTGCAGCAGCAGCTG---AATTC------TGATAAGAATTTTCCGTGCGTAATTTTCACGCAACGTTTTTGTTTGTT------------------------------------------------------------------------------------
droAna3	scaffold_13248:2880935-2881105 +		-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTA----GTGTCTGTGGCCCAGGTCCCAAGGTTTT---TGCT---TCTCCATTCCACCT-C--TTCC-GCCT----C------------------TT-------TGTGG-AGCTCTCTC--TCCCAAAAAACAA-----------CAACAACAACAAGGAGTCTGCAACTCTGATAAGAATTTTCCATGCGTATTTTTCACGTAAAGTTTTGTTTTGTTT----GGTTT--------------------------------------------------------------------------
droBip1	scf7180000396429:129952-130116 -		-G---------------------------------------TGTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTGGCCCAGGTCCCAAGGTTT---TTGCT------CTTCTCCATCTGCTCTTCC-GCCT----C------------------TT-------TGTGG-AGCTCTCTC--TCCCAAA--ACAA-----------CAACAACAACAA---GTCTGCAACTCTGATAAGAATTTTCCATGCGTATTTTTCACGTAAAGCTTTGTTTTGTTT----GGTTT--------------------------------------------------------------------------
dp5	XL_group1e:1304798-1304988 +		-G---------------------------------------GATAACA---TCAGTCCCCCACCCCCT-----TCCGTGTATT------------------------TGTGTGTGTAGCGAAGCGAGCTGCTGTTCCTGTATCTACGA------------------GTGTGTGTACTT--------TGTGTATGT---------------------------GT--GTGTG-------------------T------GTACACGAGCGTGAGTGAGTG----TAAGCAG-----TGCGTAAATGCGTAAGCTGTGTTG--------------------------------------------TTGGC------CCAGGTCTCAAGGTCCC---CGCC------ATCCCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_18:150694-150896 +		-G---------------------------------------GATAACA---TCAGTCCCCCACCCCCT-----TCCGTGTATT------------------------TGTGTGTGTAGCGAAGCGAGCTGCTGTTCCTGTATCTACGA------------------GTGTGTGTACTT--------TGTGTATGT-----------------------GTGTGTGTGTGTG-------------------TGTGTGTGTACACGAGCGTGAGTGAGTG----TAAGCAG-----TGCGTAAATGCGTAAGCTGTGTTG--------------------------------------------TTGGC------CCAGGTCTCAAGGTCCC---CGCC------ATCCCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004909:6177325-6177409 +		-T---------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTG-------------------TGT--------------------GAATG----GGGGGTGTG-------TCAATGCATGCGT----------------CTGTGTGTGGGTGTGTGGGTGTGTGAGTGTG-----TGGCTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6473:4808998-4809089 -		-A---------------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------TCTGGGTGT-TG-----------------------------TGTGTGTGTGTGTA-------------------TGT--------------------GTG-----------TGTG-------TGAACATGTGCGC-G---CGT------------------GTGTGTGTGTGTGTGTGTGTG----TGGGGTGTGG-CCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TACTCTTTTGTTGTTAATTGTCCAGCTGCCCGCCTGCGAATGATAATAATGTGAGTTGGCC---CGCTGAAAGTTGGTGCGTTTTCCACTGCTGCGCTTTTTTCTCCTCTGTTTGTAACAAATGGAATAGTT-----------TACAACAAAATGCGCAAAATTAGTTAAGGATACTTCGTTTGT-TG-----------------------------TGTGTGTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGC------------------GTTTGTGTGAGTGTGTGTGTG----TTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................TAAGCTGCGTCGC------------------GTTTGTGTGAG......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................TACTTCGTTTGT-TG-----------------------------TGTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AATGCGTAAGCTGCGTCGC------------------GTTTG............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................TACTTCGTTTGT-TG-----------------------------TGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................GCC---CGCTGAAAGTTGGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TAGTT-----------TACAACAAAATGCGCAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AAATGCGTAAGCTGCGTCGC------------------GTTTGTG..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGTGTGTGTGTG-------------------TGT--------------------GGGT.............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................TGTGTGTGTG-------------------TGT--------------------GGGTG----........................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGT-TG-----------------------------TGTGTGTGTGTGTG-------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGTTTGT----------------------------------------TGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGC------------------GTTTGTGTGAGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCG-CTCTTCCTGTTT----C------------------ACG-C----G--TT-TACTCTCTT--CTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGCTTTGTTA----TGTTTGGTACTTTTGC---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................TGTGTGAGTGTGTGTGTG----T.......................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1

dm3

-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGGTTGT-C-------------------------------GTGTGTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGC------------------GTTTGTGTAAGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCG-CTCTTCCTGTTT----C------------------ACG-C----T--TT-TGCTCTCTT--TTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTA----TGTTTGGTACTTTTGC---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGGTTGT-C-------------------------------GTGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TA----------------------------------------------------------------------------------------------------------------------------------CTTCGGTTGT-C-------------------------------GTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TA----------------------------------------------------------------------------------------------------------------------------------CTTCGGTTGT-C-------------------------------GTGTGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TGTGTG----TTGGCTGTGG-CCAGG........................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TGTTTGGTACTTTTGC---------------------------------------------------------------	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TG----TTGGCTGTGG-CCAGGTCTCAAGG................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTTGTGTAAGTGTGTGTGTG----T.......................................................................................................................................................................................................................................................................................................	21	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TGCGTCGC------------------GTTTGTGTAAGTGTGTGT...............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................TGTGTGTGTG-------------------TGT--------------------GGGTG----GCA.....................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTCGGTTGT-C-------------------------------GTGTGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTGTGTAAGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGT-C-------------------------------GTGTGTGTGTGTG-------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.43	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGT-C-------------------------------GTGTGTGTGTGTG-------------------TGT--------------------G................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTGT-C-------------------------------GTGTGTGTGTGTG-------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGT-C-------------------------------GTGTGTGTGTGTG-------------------TGT--------------------.................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTGTGTGTG----TTGGCTGTG...............................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTG----TTGGCTG.................................................................................................................................................................................................................................................................................................	18	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTG----TTGGCTGT................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGGGTGTTTGTGTATATG---------------------TGTGTGTGTGTGTG-------------------GGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGA------------------GTTTGTGTATGTGTGTGTGTG----T-----------CAAA--TCAAGGTCCCGTTAGCT------CT------------------------------------------------------------TGCTCTCTT--CTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGCAAAGCCTTGTT-TGTTG----TGTTTCGGACTTTTGC---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GTCTG------TGATAAGAATTTTCCATGCGT...............................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................TGTGTATGTGTGTGTGTG----........................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0

droYak3

-G---------------------------------------GATA----------------------------------------------------------------------------------------------------------------------------------CTTCGTTAG-------------------------------------TTTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTCGT------------------GTTTGTGAAAGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------AT-----AGCT-ATCTTCCTCTTC----C------------------ACG-C----T--TT-TACTCTATT--CTACAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTG----TGTTTGTGACTTTGGC---------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

-G---------------------------------------GATAACGGT-------------------------------------------------------------------------------------------------------------------------------------GTTAG-----------------------------TATGTGCCTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTCTGTATA-----------------TGTATGTGCCTGTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCA---GCTCTCAGCCATCT-CTCTTCCTCTTT----A------------------ACG-C----T--TT-TGCTCTCTT--CGCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGCAAAGCTTTGTTTTGTTT----TGTTTGGT-TTTTCGC---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-G---------------------------------------GATAACGGT-------------------------------------------------------------------------------------------------------------------------------------G----TGAGTGTG---------------------TGTGTGTGTGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTGGC------------------GTATGTGT--GTGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCT-CTCCTGCTGCCC----C------------------ACT-C----T--GC-TGCTCTCTT--CTCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATGTTCACGTTAAGCTTTGTTTTGCTTTATTTGTTTGGG-TTTTCGC---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-G---------------------------------------GATAACGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGTGAGTGTG-------------------TGT--------------------GGGTG----GCAGCTGCG-------TAAATGCGTAAGCTGCGTTGC------------------GTATGTCT--GCGTGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCCCACCT-CTCTTCC-GCCT----C------------------AC-------T--TT-TGCTCTCCT--CTCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTT----TGTTTGGG-TTTCAG----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-T---------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTGTCCTATCCCCTGTGTGCCTTGT--------------------GGGTGGTTTGTAGCTG--CTCTGCGTAAATGCGTAAGCTGCGTTGT------------------GTGTG----TGTGCGTGCGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTTTCTCAC------------TTG----C------------------AAG-C----T--T--TTCTCTCTT--CTTCACAC-----------------------AACAA---GTCTG------TGATAAGAATTTTCCATGCGTAATTTTCACGTAAAGCTTTGTTTTGTTT----TGTTTGGG-TTTTCGC---------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-T---------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------GTGGGTGGG---------------------GGTGTGTGTGTGTT-------------------TGT--------------------GGGTG----GTAGCTG--CTCTGCGTAAATGCGTAAGCTGCGTTGC------------------GTGAG----TGTGCGTGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCT------CTCTCTC--------------TTG----C------------------ACG-C----T--TTCTTCTCTCTT--CTCCAAACA--------------------ACAACAA---GTCTG------TGATAAGAATTTTCCATGCATAATTTTCACGTAAAGCTTTGTTTTGTT---------TGGG-TTTACGCATTTTCGTGATTTTAGTTTTTGTGAAGTGACATATTTACTTTTTTATTTTTGGCTTTTTATCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-G---------------------------------------GATAACAGT---------------------------------------------------------------------------------------------------------------------------------G-------------------------------------TTTGTGAGTGTGTG-------------------TGT--------------------GGGTG----GTTGCTG--CTCTGCGTAAATGCGTAAGCTGCGTTGC------------------GTGTG------TGTGCGTGTG----TTGGCTGTGG-CCAGGTCTCAAGGTCCCGTTAGCC------CTCTCCTACCT-CTCA-------------------------------ACG-CGCTTT--TT-TGCTCTCTT--CTCTAAACA--------------------ACAACAA---GTCTG------TGATAAGATTTTTCCATGCGTAATTTTCTCGTAAAGCCTTGTTTTGTTT----T----GGG-TTTTCGCAGCTTTGT-------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-G---------------------------------------GATAACGGT-GCAGCT----------------------------------------------------------------------------------------------------------------------CTTCATCTGT-TGTGTGTGGGTGTAGATATAGCCCCTATATCTGTTTGTGTGTGTG-------------------TG-----------------------------------TGCG-------TAAATGCGTAAGCTGCGTTGTGCATGTGCC----------TCTGTGTGAGTGTGTG--TGGTGGCTGGCTGTGG-CCAGGTCCCAAGGTTCC---CGCCCCCT--TTCTC-CATCACCTACTCC-GCCTGTGCCACAGACTGTCCTTCCCTACCGCC----T--TC-TGCTCTCTCTTTGCCAACTAGCAGAGCCCCGTCTGCAGCAGCAGCTG---AATTC------TGATAAGAATTTTCCGTGCGTAATTTTCACGCAACGTTTTTGTTTGTT------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTA----GTGTCTGTGGCCCAGGTCCCAAGGTTTT---TGCT---TCTCCATTCCACCT-C--TTCC-GCCT----C------------------TT-------TGTGG-AGCTCTCTC--TCCCAAAAAACAA-----------CAACAACAACAAGGAGTCTGCAACTCTGATAAGAATTTTCCATGCGTATTTTTCACGTAAAGTTTTGTTTTGTTT----GGTTT--------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

-G---------------------------------------TGTAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTGTGGCCCAGGTCCCAAGGTTT---TTGCT------CTTCTCCATCTGCTCTTCC-GCCT----C------------------TT-------TGTGG-AGCTCTCTC--TCCCAAA--ACAA-----------CAACAACAACAA---GTCTGCAACTCTGATAAGAATTTTCCATGCGTATTTTTCACGTAAAGCTTTGTTTTGTTT----GGTTT--------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

-G---------------------------------------GATAACA---TCAGTCCCCCACCCCCT-----TCCGTGTATT------------------------TGTGTGTGTAGCGAAGCGAGCTGCTGTTCCTGTATCTACGA------------------GTGTGTGTACTT--------TGTGTATGT---------------------------GT--GTGTG-------------------T------GTACACGAGCGTGAGTGAGTG----TAAGCAG-----TGCGTAAATGCGTAAGCTGTGTTG--------------------------------------------TTGGC------CCAGGTCTCAAGGTCCC---CGCC------ATCCCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................TGTATT------------------------TGTGTGTGTAGCGAAGCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................TGTATGT---------------------------GT--GTGTG-------------------T------GTA..............................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................TT--------TGTGTATGT---------------------------GT--GTGTG-------------------T------G................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

-G---------------------------------------GATAACA---TCAGTCCCCCACCCCCT-----TCCGTGTATT------------------------TGTGTGTGTAGCGAAGCGAGCTGCTGTTCCTGTATCTACGA------------------GTGTGTGTACTT--------TGTGTATGT-----------------------GTGTGTGTGTGTG-------------------TGTGTGTGTACACGAGCGTGAGTGAGTG----TAAGCAG-----TGCGTAAATGCGTAAGCTGTGTTG--------------------------------------------TTGGC------CCAGGTCTCAAGGTCCC---CGCC------ATCCCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

-T---------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTGTGTG-------------------TGT--------------------GAATG----GGGGGTGTG-------TCAATGCATGCGT----------------CTGTGTGTGGGTGTGTGGGTGTGTGAGTGTG-----TGGCTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................GTGGGTGTGTGGGTGTGT...................................................................................................................................................................................................................................................................................................................	18	20	0.25	5	0	3	2	0	0
............................................................................................................................................................................................................................................................................................................................................TGTGGGTGTGTGGGTGTG....................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	3	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GTGTGGGTGTGTGGGTGT.....................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	3	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GTGTGGGTGTGTGGGTGTG....................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TGTGTGGGTGTGTGGGTGT.....................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GTGTGGGTGTGTGGGTGTGT...................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GTGTGGGTGTGTGGGTGTGTG..................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

droMoj3

-A---------------------------------------TTC------------------------------------------------------------------------------------------------------------------------------------TCTGGGTGT-TG-----------------------------TGTGTGTGTGTGTA-------------------TGT--------------------GTG-----------TGTG-------TGAACATGTGCGC-G---CGT------------------GTGTGTGTGTGTGTGTGTGTG----TGGGGTGTGG-CCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................T-TG-----------------------------TGTGTGTGTGTGTA-------------------TGT--------------------G................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

dsi_12144

node_24415:78995-79144 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.1	-19.0	-19.0