ID:

dsi_12105

 Coordinate:

3l:16376744-16376811 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16376385_16376743_-]; CDS [3l_16376385_16376743_-]; CDS [3l_16376812_16376942_-]; exon [3l_16376812_16376942_-]; intron [3l_16376744_16376811_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------##################################################
TGGCAAGAGCAACACTGGTGAAGGTGGCGAGGACTCAGATCGTTATTTAAGTGAGTCACAAAGTTTATCCCTATCGGTTAGTAAACTAATCAATATTTATTTATCATTTGCTATCCAGACCAAGATCCAAACAACAGTCGTCGCTCGGCCATCAAGCAGGTGGCTTCG
**************************************************((((((.....(((((((.((....))...))))))).......))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 O002
Head
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
................................ACTCAGATCGTTATTTAA...................................................................................................................... 18 0 1 4.00 4 1 3 0 0 0 0 0 0 0
............................................................................................................................ATCCAAACAACAGTCGTCGCTCGGC................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................CAAACAACAGTCGTCGCTC...................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0
....................AAGGTGGCGAGGACTCAGATC............................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................ACAACAGTCGTCGCTCGGC................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0
............................................................................................................................ATCCAAACAACAGTCGTC.......................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............TGGTGAAGGTGGCGAGGACT..................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................CGGACGGTAAACTAATCAATAT........................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0
.....................AGGTGGCGAGGACTCAGAT................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................CAACAGTCGTCGCTCGGC................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................TCCAAACAACAGTCGTCGCTC...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................GATCCAAACAACAGTCGTCGCTC...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................CTCAGATCGTTATTTAAG..................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................GAGGACTCAGATCGTTAT.......................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................CATTTGCTATCCAGACCAAGA........................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................AAACAACAGTCGTCGCTCGGC................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................GACTCAGATCGTTATTTAAACC................................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................ATCCAAACAACAGTCGTCGCTCGGCC.................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................GATCCAAACAACAGTCGTC.......................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............TGGTGAAGGTGGCGAGGACTCA................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................GTGAAGGTGGCGAGGACTCAG.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...................GAAGGTGGCGAGGACTCAGATC............................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................GGACTCAGATCGTTATTTAAACC................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
................GGTGAAGGTGGCGAGGACTCAGATC............................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................AACAACAGTCGTCGCTCGGC................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................CCAAACAACAGTCGTCGCTCGGCC.................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................AACAAGGCTCGTCGCTCGGCC.................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................CTCAGATCGTTATTTAAACC................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................ACAGTCGTCGCTCGGT................... 16 1 8 0.13 1 0 0 0 0 0 0 0 1 0
..............................................................................CAGTAGACTAATCAATA......................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACCGTTCTCGTTGTGACCACTTCCACCGCTCCTGAGTCTAGCAATAAATTCACTCAGTGTTTCAAATAGGGATAGCCAATCATTTGATTAGTTATAAATAAATAGTAAACGATAGGTCTGGTTCTAGGTTTGTTGTCAGCAGCGAGCCGGTAGTTCGTCCACCGAAGC
**************************************************((((((.....(((((((.((....))...))))))).......))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................CAAGGTTTGTTGGCAGAAGCG........................ 21 3 3 0.67 2 1 1 0 0 0 0 0
.............................................................................................................................................GCGAGCCGGTAGTTAG........... 16 1 5 0.20 1 0 0 0 1 0 0 0
...........................................................................................................................CAAGGTTTGTTGGCAGAAGC......................... 20 3 6 0.17 1 1 0 0 0 0 0 0
...................................................................AGCGATAGCCAGTCAT..................................................................................... 16 2 20 0.15 3 0 0 3 0 0 0 0
................................................................................................................TAGGTCTGGTTCTTGG........................................ 16 1 7 0.14 1 0 0 0 0 1 0 0
.....................................................................................................................................TGTCAGGAGCGAGACGG.................. 17 2 13 0.08 1 0 0 1 0 0 0 0
.........................................................AGCTTCAAATTGGGATAGC............................................................................................ 19 3 14 0.07 1 0 0 0 0 0 1 0
.....................................................................................................................................TGTCAGGAGCGAGATGGT................. 18 3 20 0.05 1 0 0 0 0 0 0 1
............................................................................................................................................AGCGTGCCGGTAGTTCC........... 17 2 20 0.05 1 0 0 1 0 0 0 0
....................................................................................................................................ATGTCAGGAGCGAGACGGT................. 19 3 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 04:30 AM