ID:

dsi_12096

 Coordinate:

3r:4914817-4914966 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -10.8 -10.7

Flybase annnotation

exon [3r_4914636_4914816_-]; CDS [3r_4914636_4914816_-]; intron [3r_4914817_4919798_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGATTGCGGATTGCACAATCCTGGCAACCTGTTGCTGTTCGTTGGCTGCTGTGTGTGTGCTTGGTGTCTGTGTTAGTCGCGTTGTAGAATCTCGTATCCAGCGTATCCAGTCGGAGATACGCAGATCACATCACATTTTCCCCCATCGAGTGGTGCGTTGAGAGAAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCT
*********************************************************************************..(((.((.(((((((((...((........))..)))))).))))))))..********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 O002
Head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
.........................................................................................................ATCCAGTCGGAGATACGCAGATCACATC..................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................GTAGAATCTCGTATCCAGCGT................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................GTTGTAGAATCTCGTATCCAGCGT................................................................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................GTTGTAGAATCTCGTATCC...................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TCCTGCGCTCGGCCATGATCGTCT 24 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGCGCTCGGCCATGATCGTC. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TCCAGTCGGAGATACGCAGATCACTT...................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................TTGTTATCCAGCGTATCCAGTCGGAGA.................................................................................................................................... 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................CAGTCGGAGATACGCAGATCACAT...................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..GATTGCGGATTGCACAATCCTGGC................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................GTTGTAGAATCTCGTATCCAGC................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGAGAAAACCGTCAAAATTGCTGTGC............................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................TGTGTTAGTCGCGTTGTAGAAT............................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTCCCCCATCGAGTGGTG.............................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
............................................................................................TGTTATCCAGCGTATCCAGTCGGAGAA................................................................................................................................... 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................AACCTGTTGCTTTTCGTTGGCTG......................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................ATCCAGTCGGAGATACGCAGATCACAT...................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AACCGTCAAAATTGCTGT................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....TGCGGATTGCACAATCCTGAC................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ATGCGCCGCTTCCTGCGCTCGGCCA......... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................ATCCAGCGTATCCAGTCGGAGG.................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGGTGGGTTGAGAGAAAA................................................................................. 18 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................TATGATACTCTGTCCCAGG................................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................TCGGAGATACCCAGA............................................................................................................................ 15 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................ATCACATCACGCTTTCACC.......................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GGCTAACGCCTAACGTGTTAGGACCGTTGGACAACGACAAGCAACCGACGACACACACACGAACCACAGACACAATCAGCGCAACATCTTAGAGCATAGGTCGCATAGGTCAGCCTCTATGCGTCTAGTGTAGTGTAAAAGGGGGTAGCTCACCACGCAACTCTCTTTTGGCAGTTTTAACGACACGATGAGACAAGGTCCTAGGACCCCATGTAGTACGCGGCGAAGGACGCGAGCCGGTACTAGCAGA
*********************************************************************************************************************..(((.((.(((((((((...((........))..)))))).))))))))..********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
......................................................................................................................................................................TTTGGCAGTTTTACCGACACTAT............................................................. 23 2 3 6.67 20 0 9 2 4 5 0 0 0
.......................................................................................................................................................................TTGGCAGTTTTACCGACACTAT............................................................. 22 2 3 6.33 19 0 5 5 4 2 1 2 0
......................................................................................................................................................................ATTGGCAGTTTTACCGACACTAT............................................................. 23 3 3 2.67 8 0 1 4 3 0 0 0 0
.......................................................................................................................................................................TGAGCAGTTTTAACGACACGAT............................................................. 22 2 3 1.33 4 4 0 0 0 0 0 0 0
.......................................................................................................................................................................GGGGCAGTTTGAACGACACGAT............................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TGGGCAGTTTTACCGACACGAT............................................................. 22 2 3 1.00 3 3 0 0 0 0 0 0 0
..................................................................................................................................................................................AACGACACGATGAGACAAGGTCC................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................TGAGCAGTTTTAAAGACACGAT............................................................. 22 3 3 1.00 3 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GCGAGCCGGTACTAG.... 15 0 1 1.00 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................TTTCGCAGTTTTACCGGCACGAT............................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0
..........................................AACCGACGACACACACA............................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................................................GGAACCCTCTTTTGGCAGTTGT........................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TGGGCAGTTGTAACGACAGGAT............................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GTGGCAGTTTGAACGATACGAT............................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GGCGCAGTTTTAACGACACGAT............................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTTAGCAGTTTTAACGACACTA.............................................................. 22 2 3 0.67 2 0 0 0 0 0 0 2 0
........................................................................................................................................................................TGGCAGTTTTACCGACACTAT............................................................. 21 2 3 0.67 2 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TGAGCAGTTTTAACGACAAGAT............................................................. 22 3 4 0.50 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................TGGGCAGTTGTACCGACACGAT............................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTGAGCAGTTTTAACGACAAGAT............................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TGGGCAGTTTTACGGACACGAT............................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TGGAGCAGTTTTAACGACACGAT............................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTTAGCAGTTTTAACGACACTAT............................................................. 23 2 3 0.33 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................TTGGGCAGTTTTACCGACACGAT............................................................. 23 2 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................CAGTTTTACCGACACTATGAGAA........................................................ 23 3 3 0.33 1 0 0 0 0 0 0 0 1
.......................................................................................................................................................................GGAGCAGTTTTAACGACACGAT............................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTTAGCAGATTTACCGACACGAT............................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TGGGCAGTTTGACCGACACGAT............................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TTGAGCAGTTTTAAAGACACGAT............................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................TAGCAGTTTTCCCGACACGAT............................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................CGAGCAGTTTTAACGACACGAT............................................................. 22 3 4 0.25 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TGAGCGGTTTTAACGACACGAT............................................................. 22 3 5 0.20 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TTGGCTGTTTTACCGACACTAT............................................................. 22 3 5 0.20 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GCGAGCCGGTACTAGTGG. 18 2 6 0.17 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................ACAGTCTTATCGACACGAT............................................................. 19 3 11 0.09 1 1 0 0 0 0 0 0 0
..........................TTGGAGAACGACAAG................................................................................................................................................................................................................. 15 1 18 0.06 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................TTTTGGAAGTTTTAACGTCAA................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:4914767-4915016 - dsi_12096 CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TCGTTGGCT-GC---TGT---------------------------GT--------------------------------------------------------------------------------------------GTGTGCTTGGTGT--------------CTGTGTTAGTCGCGTTGTAGAATCTC-----G-TATCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATCACATTTTCCCCCATCGAGTGGTGCGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCT
droSec2 scaffold_27:344165-344415 - CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TCGTTGGCT-GC---TGT---------------------------GT--------------------------------------------------------------------------------------------GTGTGTTTGGTGT--------------CTGTGTTAGCCGCGTTGTAGAATCTC-----GTTATCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCATATCACATTTTCCCCCATCGAGTGGTGCGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCT
dm3 chr3R:16391944-16392200 + CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TCGTTGGCT-GCTGCTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTGTTTGGTGT--------------CTGTGTTAGCCGCGTTGTAGAATCTT-----G-TATCCAGCGTATCCAGTCGGTGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATCACATTTTCCCCCATCGAGTGGTGCGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCT
droEre2 scaffold_4770:5281774-5282028 - CTGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TGGTTGGCT-GC---TGC---------------------------AC-G-------------C----------------------G------------------------------------------CGTGTGTGTGTGT---------GT--------------GCGTGTTAGCCGAGTTGTAGAATCTT-----G-TAGCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATCATATTTTCCCCCATCGAGTGGTGTGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATCGTCT
droYak3 v2_chr3R_random_465:614-870 + CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TGGTTGGCT-GC---TGC---------------------------AC-G-------------C------AA--------------G------------------------------------------TGTGTGTGTGCG---------TGT--------------GTGTGTTAGCCGTGTTGTAGAATCTT-----G-TATCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGC---------------------------------------------------------TCACATCGTATTTTCCCCCATCGAGTGGTGTGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATCGTCT
droEug1 scf7180000409804:2719439-2719679 + CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTG---------------GTTGGCT-GC---TGT---------------------------G---CCGTT----------------------------------------------------------------------------------------TAC--------------------TGTGTGTTTACCGTGCTGTAGAATTTTCAACC--T--GGAGCGTATCCAGT-------A----------------------------------------------------------------TCC---------------------------------------------------------------------ATATATACG--CACA------------TCTT----------------------------------------T-----------TTCCATCCATCGAGTGGTGTTTTGAAAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGATATATCATGCGCCGATTCCTGCGCTCGGCCATGATTGTCT
droBia1 scf7180000302402:9218695-9218943 + CCGATTGCGC-----------ATTGCACAATCCTGG-----------CAACCTGTTGTTGTTCTTATTGTTGTTGGCTGGCT-GC---TGT---------------------------GT-G-------------C----------------------G------------------------------------------TGTGTGTGTGCG---------TTT----ATCCA--TCCGTGTGCTTACCGT----------------------------GTATCTGCA---AGATA-----------------------------------------------------------------------------------------------------------------------------------------------CA--CCCG---------------------------------------------------------TCAACCTATAGTTCCCCCCAGCCAGTGGTGTGTTGAG-G-AAAGGCATCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATCGTCT
droTak1 scf7180000415630:232259-232475 + CCGATTGCAA-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGT---------------------------GT----------------------------------------------------------------------------------------GTG----TACT----G----------TGCTTGTGTGTTTACCGT----------------------------GTATCTGCC---AGATAC----------------------------------------------A-------------------------------------------C-------------------------------------------CATCTAT--ATATA--------------TATT----------------------------------------------------TTTCCCCCATCCAGTGGAGTGTTGAGAA-AAAAGCATCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATTGTCT
droEle1 scf7180000491008:516857-517113 - CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGT------------------TTGGCT-GC---TGT---------------------------G---CTGCTGG-ACTGCTGGACTGCA--------------G---------------------------------------------------------------------------TGTTTGT-TGTTTACCG---TGTAGAATATC-GAC-G-TATCGGGCGTATCCGTG---AGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGAGAGGA----------------------------------------------------GGAGATC-CCTTTTCCCCCATCGAGTGGAGTGTGTAGAG-AAAGGCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCT
droRho1 scf7180000779477:309384-309615 - CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGC------------------TTGGCT-GC---TGT---------------------------G---CAGTT----------G----------------------------------------------------------------------------------------------------TGT-TGTTTACGG---TGCAGAATTTC-GACG--T--GGGGCGTATCCGTG---CGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGAGA-------------------------------------------------------AGAGATC-CATTTTCACCCATCAAGTGGAGTGTGTAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCT
droFic1 scf7180000453930:418116-418362 - CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTG-------------------TTGGCT-GC---TGT---------------------------GTG-CTGTT-------------CGCC--------------G---------------------------------------------------------------------------TGTGTGTGTGTTTACCG---TGTAGAATCTC-GGCC--TGGAGAGCGTATCTGTC---CGATACGCGGC------------------------------------------------------------------------CGAT-----------------------------------------------------CATACAT--AGATA--------------TATT--------------------------------------TCC-----------CTTCC----CC----GGAGTGTTAAGAG-AAAACCGCCAAAATTGCCGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGATCGGCCATGATTGTCT
droKik1 scf7180000300058:63896-64138 + CGAATTGCAG-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGT---------------------------GT-G-------------CTGAGTGCA--------------GTGTCTACCG-------------TCGTCGCTTAGTGCCGTGTGT----------------GTG-----------------------------GTGTTGT------------------GGGGCGTATCTGGT---CGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGATA----------TATT-----------------------------TCGATAGTTT-C---------CTTCCCGC----------CCGCGTCAACCG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCT
droAna3 scaffold_13340:13183301-13183599 - AAGA-----G-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGT---------------------------G---CCGTT---------------CC--------------GTGTCTACCGAGAGTAACAGTGATCGTTGTATAGTGCCGTGTAT----------------AGGG------------------------------------------------------A---------------------------------------------------------AGGG---TACACCAACCAGCC---------AGATACCCCGCCAGTTACACCCCACCATTACCATTACCATTACCATTCATCCCGTCTGATAGTCGGG------AT--ATATA--------------TATT----------------------------------------T-----------TTTCC---TTCGA---AAGTGTACATCG-AAAGCCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGATCGGCCATGATCGTCT
droBip1 scf7180000396691:2060111-2060413 - AAGA-----G-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGTGCCT------------------------T-----------------GTGTGCCTTGTTTGCCGTTCCGTGTCTACCGAGA--AACAGTGATCGCTGTGCAGTGCCGTGTAT----------------AGGG------------------------------------------------------A---------------------------------------------------------AGGG---TACAC----CCGCC---------AGATACC-CGCCAGTTACACCCCACCA------------TTAGCATTCGTCCCGTC--ATAATCGGGACATACATACA--TATA------------TATT----------------------------------------T-----------TTTCG----TTGA---AAGTGTACATCG-AAAGCCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGATTCCTGCGATCGGCCATGATCGTCT
dp5 2:1739-1995 - TCAATTGCAGTCAGCTGCAATATTGCACAATCCTGC-----------CAACCTGTT----------------------CA--GAC----------------------ACTGGC-CTGTC----------------------------------------------------------------------------------------TGTCTCT---------GTGCAG-----------------A------------------------------------------------------GCCGCCCCAGAGCCGTGCAGTGGAGTGCAGTGCAG-------------------TTCAGCGCCATATATC-TGCGAGATA-----------------------------------------------------------CA--G------TGGGCGCTCTCTT----------------------------------------T-----------CTTCCC----T-----GAGTGTTAACCGCAAAGCCGTCAAAATTGCTGTGCTACTTTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATTGTCT
droPer2 scaffold_7:2792062-2792323 - TCAATTGCAGTCAGCTGCAATATTGCACAATCCTGC-----------CAACCTGTT----------------------CA--GAC----------------------ACTGGC-CTGTC----------------------------------------------------------------------------------------TGTCTCT---------GTGCAG-----------------A------------------------------------------------------GCCGCCCCAGAGCCGTGCAGTGGAGTGCAGTGCAGTGCAG--------------TTCAGCGCCATATATC-TGCGAGATA-----------------------------------------------------------CA--G------TGGGCGCTCTCTT----------------------------------------T-----------CTTCCCTC---------AGTGTTAACCGCAAAGCCGTCAAAATTGCTGTGCTACTTTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTCCGCTCGGCCATGATTGTCT
droWil2 scf2_1100000004921:2500516-2500813 - AGAG--AGAGAAAAAAAAAATATTGCACAATCCTGC-----------CAACTTGTT----------------------CGC--GC---TGCATTTTGCGTTCGCTTTTTTCGT-----GT--------------------------------------------------------------------------------GT----GTGTGTGT---------GT-----------------------------------------------------GTATATCTACG---CGATCCTCGGCCCCCCCTCCGTCACCCCCTGGGATCCAACGCAGTCGCA--------------TCCAACCG---------CTCCAGTT------------------TTTCATTTCTTTTG-------------------------------------------------ATT-----------------------------TCGATTTTTT-G---------TTTTTCTC---------AACGTGTTAAAGTCAAAGCCGTCAAAATTGCTGTACTACTTTGTTCCAGGATCCTGGGATATATCATGCGGCGCTTTTTGCGTTCGGCCATGATTGTCT
droVir3 scaffold_13047:10425125-10425371 - CA-------T-----------ATTGCACAATCCTGTCGCTTGTTGGCCAACCTGTT----------------------CGCT-TG---TAT---------------------------CT-G-------------TTGGCTACA--------------G-----------------------------------------------------------------------------------TTTTAATATAATTCAATAAA----------T-----------------------A----------------------------------------------------------------CCC---------------------------------------------------------------------ATATATACA--TATA------------TATATTTGTAGATAAATATATATATATATATATTGAATAATTTCA---------CTTTGAAG----------CCGT-TTAAAGT-CCAGCCGTCAAAATTGCTGTGCTACTGTGTTCCAGGATCCTGGGGTACATCATGCGGCGCTTCCTGCGCTCGGCCATGATTGTCT
droMoj3 scaffold_6540:28558329-28558413 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCGCCAAAATTGCTGTCCTACTGTGTTCCAGGATCCTGGGGTACATCATGCGCCGTTTCCTGCGCTCGGCCATGATTGTCT
droGri2 scaffold_14624:146825-147071 - CCAGCTGCAT-----------ATTGCGCAATCCTGACGCTTGTTGGCCAACCTGTT----------------------CGCTTCC----------------------ACTGCCGCT--G---CCGCTGTCACTGC-------------------------------CA-------------CAGCAGC----------------------------------------------------TTTGTAGCTCGCATTGTTGTATCTT-----TTTTTT-----------TT---GGATAC----------------------------------------------A-------------------------------------------A-------------------------------------------TAT-------------TAGTTTTGGCTATTTT----------------------------------------T-----------TTTCG----TCCAAT------TTCAC-A-AAAGGCGTCAAAATTGCTGTGTTACTGTGTTCCAGGATCCTGGGGTACATCATGAGGCGCTTCCTGCGCTCGGCCATGATTGTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TCGTTGGCT-GC---TGT---------------------------GT--------------------------------------------------------------------------------------------GTGTGCTTGGTGT--------------CTGTGTTAGTCGCGTTGTAGAATCTC-----G-TATCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATCACATTTTCCCCCATCGAGTGGTGCGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................ATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATC......................................................................................................................2812.00200200000000000000
...............................................................................................................................................................................................................................................................GTAGAATCTC-----G-TATCCAGCGT............................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
............................................................................................................................................................................................................................................................GTTGTAGAATCTC-----G-TATCCAGCGT............................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
............................................................................................................................................................................................................................................................GTTGTAGAATCTC-----G-TATCC.................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCGCTCGGCCATGATCGTCT2412.00200000000000002000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTCGGCCATGATCGTC.2111.00100000000001000000
.............................................................................................................................................................................................................................................................................................CAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACAT.......................................................................................................................2411.00100000000000100000
..GATTGCGG-----------ATTGCACAATCCTGG-----------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............................................................................................................................................................................................................................................................GTTGTAGAATCTC-----G-TATCCAGC..............................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAG-AAAACCGTCAAAATTGCTGTGC...............................................................2611.00110000000000000000
................................................................................................................................................................................................................................................TGTGTTAGTCGCGTTGTAGAAT................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCCCATCGAGTGGTG...............................................................................................1811.00100000100000000000
..........................................................................................................................................................................................................................................................................................ATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACAT.......................................................................................................................2711.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTCAAAATTGCTGT.................................................................1811.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCCGCTTCCTGCGCTCGGCCA.........2511.00100000000000100000
.................................................................................................................................................................................................................................................................................ATCCAGCGTATCCAGTCGGAGG...............................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TCGTTGGCT-GC---TGT---------------------------GT--------------------------------------------------------------------------------------------GTGTGTTTGGTGT--------------CTGTGTTAGCCGCGTTGTAGAATCTC-----GTTATCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCATATCACATTTTCCCCCATCGAGTGGTGCGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGCTTCCTGCGCTCGGC...........2211.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCTGCGCTCGGCCATG.......2011.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCGCTCGGCCATGATC....2011.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCGCCGCTTCCTGCGCTC..............2311.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCATGCGCCGCTTCCTGCGCTC..............2611.0010010
....................................................................................................................................................................................................................................................................................CAGCGTATCCAGTCGGAGATG-----------------------------------------------------------------------------------------------------------------------------------------------..............................................................................................................................................................................................2111.0010001
..........................................................................................T---------------------------GT--------------------------------------------------------------------------------------------GTGTGTTTGGTGT--------------CTGTGTT................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
dm3
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TCGTTGGCT-GCTGCTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTGTTTGGTGT--------------CTGTGTTAGCCGCGTTGTAGAATCTT-----G-TATCCAGCGTATCCAGTCGGTGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATCACATTTTCCCCCATCGAGTGGTGCGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................CACAATCCTGG-----------CAACCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGGGTACATCATGCGC............................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000010000000000
..........................................................................................................................................................................................................................TTGGTGT--------------CTGTGTTAGCCGCGTTGT.....................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGGTGCGTTGAGAG-AAAACCGTC............................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGGGGTACATCATGCG.............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GAATCTT-----G-TATCCAGCGTATC.........................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................T--------------CTGTGTTAGCCGCGTTGTAGAA.................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.........................................................................................................................................................................................................................................................................................TATCCAGTCGGTGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACA........................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCCCCATCGAGTGGTGCG.............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATTGCTGTGCTACTCT.........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAGTCGGTGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACA........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGGTACATCATGCGCCGCTTCC.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TGGCT-GCTGCTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GCGTTGTAGAATCTT-----G-TATCC.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GCCGCGTTGTAGAATCTT-----G-......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................ACCTGTTGCTGT------------TCGTTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TT-----G-TATCCAGCGTATCCAGTCG...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGTGGTGCGTTGAGAG-AA...................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................ATCCAGTCGGTGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATC......................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GTGTGTGTGTTTGGTGT--------------CT.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TTTGGTGT--------------CTGTGTTAGCCGCG.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................ACCTGTTGCTGT------------TCGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCCAGTCGGTGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACAT.......................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................TGTTTGGTGT--------------CTGTGTTAGCCGCGTT.......................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGGGTACATCATGCGCCGCT........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCCAGGATCCTGGGGT.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................AATCCTGG-----------CAACCTGTTGCTGT------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCGCTCGGCCATGATCGTC.2211.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCATCGAGTGGTGCGTTGAGAG-A....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGATCCTGGGGTACATCATGCGC............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGATCCTGGGGTACATCATG...............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CACAATCCTGG-----------CAACCTGTTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCCTGCGCTCGGCCA.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....TGCGG-----------ATTGCACAATCCTGG-----------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTACTCTGTTCCAGGATC..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TTTGGTGT--------------CTGTGTTAGCCGCGTTG......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCATCGAGTGGTGCGTTGAGAG-AA...................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................GGTGT--------------CTGTGTTAGCCGCGTT.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TTTGGTGT--------------CTGTGTTAGCCGCGTTGTAG...................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................GTTTGGTGT--------------CTGTGTTAGCCGCG.........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TCTT-----G-TATCCAGCGTATCCAGTCGGT.................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCATCGAGTGGTGCGTTGAGAG-AAA..................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GATTGCGG-----------ATTGCACAATCCTGG-----------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AAAACCGTCAAAATTGCTGTGCT..............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................ATCCAGTCGGTGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACA........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................GCTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTGTTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCACAATCCTGG-----------CAACCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGCTGTGCTACTCTG........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGGTGCGTTGAGAG-AAAA.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................TTGCTGT------------TCGTTGGCT-GCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TTTGGTGT--------------CTGTGTTAGCCGT..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................TTGGTGT--------------CTGTGTTAGCCGCG.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................T-GCTGCTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................CTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................T-GCTGCTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................CTGCTGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................18130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
........................................................................................TGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTGTTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TGT---------------------------GT----------------------------------------------------------------------------------------GTGTGTGTGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TGGTTGGCT-GC---TGC---------------------------AC-G-------------C----------------------G------------------------------------------CGTGTGTGTGTGT---------GT--------------GCGTGTTAGCCGAGTTGTAGAATCTT-----G-TAGCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGA---------------------------------------------------------TCACATCATATTTTCCCCCATCGAGTGGTGTGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGTGGTGTGTTGAGA.......................................................................................1911.0010000100
.........................................................CTGT------------TGGTTGGCT-GC---TGC---------------------------AC-G-------------C----------------------G------------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTGT------------TGGTTGGCT-GC---TGC---------------------------AC-G-------------C------AA--------------G------------------------------------------TGTGTGTGTGCG---------TGT--------------GTGTGTTAGCCGTGTTGTAGAATCTT-----G-TATCCAGCGTATCCAGTCGGAGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGC---------------------------------------------------------TCACATCGTATTTTCCCCCATCGAGTGGTGTGTTGAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCCTGCGCTCGGCCAT........2020.50100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCCCCATCGAGTGGTGT..............................................................................................2220.50100010000000
.................................................ACCTGTTGCTGT------------TGGTTGGCT-G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010000000
droEug1
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGCTG---------------GTTGGCT-GC---TGT---------------------------G---CCGTT----------------------------------------------------------------------------------------TAC--------------------TGTGTGTTTACCGTGCTGTAGAATTTTCAACC--T--GGAGCGTATCCAGT-------A----------------------------------------------------------------TCC---------------------------------------------------------------------ATATATACG--CACA------------TCTT----------------------------------------T-----------TTCCATCCATCGAGTGGTGTTTTGAAAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGATATATCATGCGCCGATTCCTGCGCTCGGCCATGATTGTCTSizeHit CountTotal NormTotal
No Reads
droBia1
CCGATTGCGC-----------ATTGCACAATCCTGG-----------CAACCTGTTGTTGTTCTTATTGTTGTTGGCTGGCT-GC---TGT---------------------------GT-G-------------C----------------------G------------------------------------------TGTGTGTGTGCG---------TTT----ATCCA--TCCGTGTGCTTACCGT----------------------------GTATCTGCA---AGATA-----------------------------------------------------------------------------------------------------------------------------------------------CA--CCCG---------------------------------------------------------TCAACCTATAGTTCCCCCCAGCCAGTGGTGTGTTGAG-G-AAAGGCATCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotal
No Reads
droTak1
CCGATTGCAA-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGT---------------------------GT----------------------------------------------------------------------------------------GTG----TACT----G----------TGCTTGTGTGTTTACCGT----------------------------GTATCTGCC---AGATAC----------------------------------------------A-------------------------------------------C-------------------------------------------CATCTAT--ATATA--------------TATT----------------------------------------------------TTTCCCCCATCCAGTGGAGTGTTGAGAA-AAAAGCATCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATTGTCTSizeHit CountTotal NormTotal
No Reads
droEle1
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGT------------------TTGGCT-GC---TGT---------------------------G---CTGCTGG-ACTGCTGGACTGCA--------------G---------------------------------------------------------------------------TGTTTGT-TGTTTACCG---TGTAGAATATC-GAC-G-TATCGGGCGTATCCGTG---AGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGAGAGGA----------------------------------------------------GGAGATC-CCTTTTCCCCCATCGAGTGGAGTGTGTAGAG-AAAGGCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotal
No Reads
droRho1
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTGC------------------TTGGCT-GC---TGT---------------------------G---CAGTT----------G----------------------------------------------------------------------------------------------------TGT-TGTTTACGG---TGCAGAATTTC-GACG--T--GGGGCGTATCCGTG---CGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGAGA-------------------------------------------------------AGAGATC-CATTTTCACCCATCAAGTGGAGTGTGTAGAG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotal
No Reads
droFic1
CCGATTGCGG-----------ATTGCACAATCCTGG-----------CAACCTGTTG-------------------TTGGCT-GC---TGT---------------------------GTG-CTGTT-------------CGCC--------------G---------------------------------------------------------------------------TGTGTGTGTGTTTACCG---TGTAGAATCTC-GGCC--TGGAGAGCGTATCTGTC---CGATACGCGGC------------------------------------------------------------------------CGAT-----------------------------------------------------CATACAT--AGATA--------------TATT--------------------------------------TCC-----------CTTCC----CC----GGAGTGTTAAGAG-AAAACCGCCAAAATTGCCGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGATCGGCCATGATTGTCTSizeHit CountTotal NormTotal
No Reads
droKik1
CGAATTGCAG-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGT---------------------------GT-G-------------CTGAGTGCA--------------GTGTCTACCG-------------TCGTCGCTTAGTGCCGTGTGT----------------GTG-----------------------------GTGTTGT------------------GGGGCGTATCTGGT---CGATA-----------------------------------------------------------------------------------------------------------------------------------------------CG--CAGATA----------TATT-----------------------------TCGATAGTTT-C---------CTTCCCGC----------CCGCGTCAACCG-AAAACCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGCTCGGCCATGATCGTCTSizeHit CountTotal NormTotal
No Reads
droAna3
AAGA-----G-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGT---------------------------G---CCGTT---------------CC--------------GTGTCTACCGAGAGTAACAGTGATCGTTGTATAGTGCCGTGTAT----------------AGGG------------------------------------------------------A---------------------------------------------------------AGGG---TACACCAACCAGCC---------AGATACCCCGCCAGTTACACCCCACCATTACCATTACCATTACCATTCATCCCGTCTGATAGTCGGG------AT--ATATA--------------TATT----------------------------------------T-----------TTTCC---TTCGA---AAGTGTACATCG-AAAGCCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGCTTCCTGCGATCGGCCATGATCGTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCCTGCGATCGGCCA.........1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................AACCAGCC---------AGATACCCCGCCA.............................................................................................................................................................................................................................................................2111.001010000
droBip1
AAGA-----G-----------ATTGCACAATCCTGG-----------CAACCTGTT----------------------GGCT-GC---TGTGCCT------------------------T-----------------GTGTGCCTTGTTTGCCGTTCCGTGTCTACCGAGA--AACAGTGATCGCTGTGCAGTGCCGTGTAT----------------AGGG------------------------------------------------------A---------------------------------------------------------AGGG---TACAC----CCGCC---------AGATACC-CGCCAGTTACACCCCACCA------------TTAGCATTCGTCCCGTC--ATAATCGGGACATACATACA--TATA------------TATT----------------------------------------T-----------TTTCG----TTGA---AAGTGTACATCG-AAAGCCGTCAAAATTGCTGTGCTACTCTGTTCCAGGATCCTGGGGTACATCATGCGCCGATTCCTGCGATCGGCCATGATCGTCTSizeHit CountTotal NormTotal
No Reads
dp5
TCAATTGCAGTCAGCTGCAATATTGCACAATCCTGC-----------CAACCTGTT----------------------CA--GAC----------------------ACTGGC-CTGTC----------------------------------------------------------------------------------------TGTCTCT---------GTGCAG-----------------A------------------------------------------------------GCCGCCCCAGAGCCGTGCAGTGGAGTGCAGTGCAG-------------------TTCAGCGCCATATATC-TGCGAGATA-----------------------------------------------------------CA--G------TGGGCGCTCTCTT----------------------------------------T-----------CTTCCC----T-----GAGTGTTAACCGCAAAGCCGTCAAAATTGCTGTGCTACTTTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTGCGCTCGGCCATGATTGTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................ATTGCACAATCCTGC-----------CAACCTGTT----------------------CA--GA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
..................................................................................................................................................................................................................CTCT---------GTGCAG-----------------A------------------------------------------------------GCCGCCCCA................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................TATC-TGCGAGATA-----------------------------------------------------------CA--G------TGGGC..............................................................................................................................................................................2111.0010000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCGCAAAGCCGTCAAA.........................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................CAGAGCCGTGCAGTGGAGTGCAG...........................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................C-----------CAACCTGTT----------------------CA--GAC----------------------ACTGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................ATC-TGCGAGATA-----------------------------------------------------------CA--G------TGGGCGC............................................................................................................................................................................2211.0010100000000
............................AATCCTGC-----------CAACCTGTT----------------------CA--GAC----------------------ACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
droPer2
TCAATTGCAGTCAGCTGCAATATTGCACAATCCTGC-----------CAACCTGTT----------------------CA--GAC----------------------ACTGGC-CTGTC----------------------------------------------------------------------------------------TGTCTCT---------GTGCAG-----------------A------------------------------------------------------GCCGCCCCAGAGCCGTGCAGTGGAGTGCAGTGCAGTGCAG--------------TTCAGCGCCATATATC-TGCGAGATA-----------------------------------------------------------CA--G------TGGGCGCTCTCTT----------------------------------------T-----------CTTCCCTC---------AGTGTTAACCGCAAAGCCGTCAAAATTGCTGTGCTACTTTGTTCCAGGATCCTGGGGTACATCATGCGCCGGTTCCTCCGCTCGGCCATGATTGTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGAG--AGAGAAAAAAAAAATATTGCACAATCCTGC-----------CAACTTGTT----------------------CGC--GC---TGCATTTTGCGTTCGCTTTTTTCGT-----GT--------------------------------------------------------------------------------GT----GTGTGTGT---------GT-----------------------------------------------------GTATATCTACG---CGATCCTCGGCCCCCCCTCCGTCACCCCCTGGGATCCAACGCAGTCGCA--------------TCCAACCG---------CTCCAGTT------------------TTTCATTTCTTTTG-------------------------------------------------ATT-----------------------------TCGATTTTTT-G---------TTTTTCTC---------AACGTGTTAAAGTCAAAGCCGTCAAAATTGCTGTACTACTTTGTTCCAGGATCCTGGGATATATCATGCGGCGCTTTTTGCGTTCGGCCATGATTGTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................GT-----------------------------------------------------GTATATCTACG---CGATCCTCGGCCCCC...................................................................................................................................................................................................................................................................................................................................2812.00220000
droVir3
CA-------T-----------ATTGCACAATCCTGTCGCTTGTTGGCCAACCTGTT----------------------CGCT-TG---TAT---------------------------CT-G-------------TTGGCTACA--------------G-----------------------------------------------------------------------------------TTTTAATATAATTCAATAAA----------T-----------------------A----------------------------------------------------------------CCC---------------------------------------------------------------------ATATATACA--TATA------------TATATTTGTAGATAAATATATATATATATATATTGAATAATTTCA---------CTTTGAAG----------CCGT-TTAAAGT-CCAGCCGTCAAAATTGCTGTGCTACTGTGTTCCAGGATCCTGGGGTACATCATGCGGCGCTTCCTGCGCTCGGCCATGATTGTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................TGTTGGCCAACCTGTT----------------------CGCT-T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000002
................................................AACCTGTT----------------------CGCT-TG---TAT---------------------------CT-G-------------TTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
..................................................CCTGTT----------------------CGCT-TG---TAT---------------------------CT-G-------------TTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCGCCAAAATTGCTGTCCTACTGTGTTCCAGGATCCTGGGGTACATCATGCGCCGTTTCCTGCGCTCGGCCATGATTGTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCAGCTGCAT-----------ATTGCGCAATCCTGACGCTTGTTGGCCAACCTGTT----------------------CGCTTCC----------------------ACTGCCGCT--G---CCGCTGTCACTGC-------------------------------CA-------------CAGCAGC----------------------------------------------------TTTGTAGCTCGCATTGTTGTATCTT-----TTTTTT-----------TT---GGATAC----------------------------------------------A-------------------------------------------A-------------------------------------------TAT-------------TAGTTTTGGCTATTTT----------------------------------------T-----------TTTCG----TCCAAT------TTCAC-A-AAAGGCGTCAAAATTGCTGTGTTACTGTGTTCCAGGATCCTGGGGTACATCATGAGGCGCTTCCTGCGCTCGGCCATGATTGTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:18 AM