ID:

dsi_12074

 Coordinate:

3l:7737484-7737633 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7737380_7737483_-]; exon [3l_7737238_7737483_-]; intron [3l_7737484_7738547_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACCAAAACGCTTACTAAAACTTGAAACTAAAGACTTTGCCAACTGTAGTGTGGCCTGTATAAACTTTGTAAATGATCGAAGTCTAGTAATATAGCCTTTACTCTGGCATTGCAGCACTAATTCATCTTTCACATAGGATATTTTTGTGCACAGCAGCTGAAACTTTAATAACTAATGCAAATGAATGGACTCTTTACAGATGATAACGACATGGAAAACAGTATTCAACTGGAACCAAACCAAACGATC
**************************************************.....(((((...((((((........))))))...(((((...(((........)))))))).((((......(((((......)))))......))))...(((....................)))................)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................................................ATTCAACTGGAACCAAACC........ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................ACGACATGGAAAACAGTATTCAACTGGA................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................CCAACTGTAGTGTGGCCTGTATAA........................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................CCAACTGTAGTGTGGCCTGT............................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACGATAACGACATGGAGAACAGTATTCAAC.................... 30 2 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................ATAAATGATAACGACATGGAAAACA............................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................TCGTAGTCTAGTAATA.............................................................................................................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................TTTCGCAGAGGATATTTTT........................................................................................................ 19 2 6 0.17 1 0 0 0 0 0 1 0 0 0
..........................................................................GCTCGTAGTCTAGTAAT............................................................................................................................................................... 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCTTTACCGATGATTACAAC....................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0
................................................................................................CTATAGTCTGGCATTGC......................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 1 0
............................................................................TCGCGGTCTAGTAATA.............................................................................................................................................................. 16 2 18 0.06 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................................TATGTGAACAGCAGTTGAA........................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTGGTTTTGCGAATGATTTTGAACTTTGATTTCTGAAACGGTTGACATCACACCGGACATATTTGAAACATTTACTAGCTTCAGATCATTATATCGGAAATGAGACCGTAACGTCGTGATTAAGTAGAAAGTGTATCCTATAAAAACACGTGTCGTCGACTTTGAAATTATTGATTACGTTTACTTACCTGAGAAATGTCTACTATTGCTGTACCTTTTGTCATAAGTTGACCTTGGTTTGGTTTGCTAG
**************************************************.....(((((...((((((........))))))...(((((...(((........)))))))).((((......(((((......)))))......))))...(((....................)))................)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................TTGACCTTGGTTTGGTTTTCG.. 21 2 2 0.50 1 1 0 0 0
...................................................................................................................................................................................................................................TTGACCTTGGTTTGGTTTTCGAT 23 3 3 0.33 1 1 0 0 0
..............................................................................................................................................AAAGTACGTGTCGTCGAGTTTG...................................................................................... 22 3 4 0.25 1 0 1 0 0
....................................................................................................................................................................................................................................TGAGCTTGGTTTAGTTGGCT.. 20 3 12 0.08 1 0 1 0 0
.................................................................AAAAATTTATTAGCTTCAGGT.................................................................................................................................................................... 21 3 16 0.06 1 0 0 1 0
...............................................................................................................................................................................................AGAAAGTTCTACTATTG.......................................... 17 2 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 10:28 AM