ID:

dsi_12053

 Coordinate:

3r:4212105-4212164 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.2 -7.1

Flybase annnotation

exon [3r_4211955_4212104_+]; CDS [3r_4211955_4212104_+]; CDS [3r_4212165_4212440_+]; exon [3r_4212165_4212640_+]; intron [3r_4212105_4212164_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
TGCATGCCGTGGTCACAGTGCGTGATGCGAAGCACACCAACTTTGTGGAGGTGGGATCGAGTCTGTATGTCCTCTTGGAGCACCCTTTTATCACATTTTTGCCTTTGTAGTTCCGCAACTTCAAGATCGTCTACCGACGCTATGCGGGTCTGTATTTCTG
**************************************************((((....(((..(((...(((....))))))..)))...))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
................................................................................................................CCGCAACTTCAGGATCGTCTA........................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................GTTCCGCAACTTCAAGATCGT.............................. 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0
.................................................................................................................CGCAACTTCAAGATCGTCTA........................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...................................................TGGGATCGAGTCTGTATGTCC........................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0
...........................................................................................................................................CTATGCGGGTCTGTATTTCTG 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................AGTCTGTATGTCCTCTTGGAG................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................................CTTCAAGATCGTCTACCGACGCTATGCGG............. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................CGCAACTTCAAGATCGTCTAC.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................GTTCCGCAACTTCAAGATCGTC............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............ACAGTGCGTGATGCCAAGCACAC........................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0
..............................................................................................................TTCCGCAACTTCAAGATCGTCTACCGA....................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................AAGCACACCAACTTTGTG................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................TTCCGCAACTTCAAGATCGTCT............................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................CCGCAACTCCAAGATCGCCT............................ 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................TTCTAGTTCGTCTACCGAC...................... 19 2 2 0.50 1 0 0 0 0 0 0 0 1 0
....................................................................................................GCCTTTGTAGTTCCGTT........................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1
........................................CTTAGTGTAGGTGGGA........................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACGTACGGCACCAGTGTCACGCACTACGCTTCGTGTGGTTGAAACACCTCCACCCTAGCTCAGACATACAGGAGAACCTCGTGGGAAAATAGTGTAAAAACGGAAACATCAAGGCGTTGAAGTTCTAGCAGATGGCTGCGATACGCCCAGACATAAAGAC
**************************************************((((....(((..(((...(((....))))))..)))...))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.CGTACGGCACCAGTGTCACG........................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..TTACGGCACCAGTGTCACGCAC........................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..........................................................................AACCTCGTGGGAAAATAG.................................................................... 18 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................GTTCTAGCAGATGGCTGCGAT.................. 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................GCTGCGATACGCCCAGACATAAA... 23 0 1 1.00 1 0 0 1 0 0
.TGTACGGCACCAGTGTCACG........................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
..............................................................................TCGCGGGAACATAGTATAAAAA............................................................ 22 3 2 0.50 1 0 0 0 1 0
...........................................................TGAGATATGCAGGAGAAC................................................................................... 18 3 20 0.10 2 0 0 0 2 0
.......................CAAAGCTTCGTGTGGTT........................................................................................................................ 17 2 19 0.05 1 0 0 0 0 1
..............................................................GATATGCAGGAGAACTTC................................................................................ 18 3 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 11:19 PM