ID:

dsi_12041

 Coordinate:

2r:5380315-5380379 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5380039_5380314_+]; CDS [2r_5380039_5380314_+]; CDS [2r_5380380_5380534_+]; exon [2r_5380380_5381724_+]; intron [2r_5380315_5380379_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------##################################################
GATCATAGAGAAGGCTATTCTCAAGGAAATTGCTGAGCATGCGCGGAAATGTAAGCTACGATGAAGATCTGAGTATTTTTCAAAGTTTTTAATAACAAATTGTTTAATCTTAAAGGTAAATTGCAAAAATATGAGGTTCCCGCCGCCATCACACTGTGTAAGGAA
**************************************************...........(((((((.((((.....))))..)))))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR902009
testis
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
.....................CAAGGAAATTGCTGAGCATGCGCGGA...................................................................................................................... 26 0 1 5.00 5 1 3 1 0 0 0 0
...........AGGCTATTCTCAAGGAAATTGCTGAGC............................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0
...................CTCAAGGAAATTGCTGAGC............................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0
.....................CAAGGAAATTGCTGAGCATGCGCGGAA..................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
...................CTCAAGGAAATTGCTGAG................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................GTTCCCGCCGCCATCACACTGC........ 22 1 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................CGCCATCACACTGTGTAAGGAA 22 0 1 1.00 1 1 0 0 0 0 0 0
...............TATTCTCAAGGAAATTGCTGAG................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................CGGAAATGTAAATTGCAAAAATATGAGGT............................ 29 3 1 1.00 1 0 0 0 0 1 0 0
...................CTCAAGGAAATTGCTGAGCAT............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
....................TCAAGGAAATTGCTGAGCATGCGCGGA...................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
..........AAGGCTATTCTCAAGGAAATTGCTGAGC............................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.......................AGGAAATTGCTGAGCATGCGCGGAA..................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
...............TATTCTCAAGGAAATTGCTGAGC............................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...............................GCTGAGCATGCGCGGAAAT................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
......................AAGGAAATTGCTGAGCATGCGCGGAAAT................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.............................TTGCTGAGCATGCGCGGAA..................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..................TCTCAAGGAAATTGCTGAGC............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.....................CAAGGAAATTGCTGAGCATGCGCGGAAAT................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0
............................ATTGCTGAGCATGCGCGGAAATGT................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................TCCCGCCGCCATCACACTGTGT...... 22 0 1 1.00 1 1 0 0 0 0 0 0
.........................GAAATTGCTGAGCATGCGCGGAAAT................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..................TATCAAGGAAATTGCTGAG................................................................................................................................ 19 1 2 0.50 1 0 0 0 0 0 1 0
......................................CTGCGCGGAAATGTA................................................................................................................ 15 1 10 0.10 1 0 0 0 0 0 0 1

Anti-sense strand reads

CTAGTATCTCTTCCGATAAGAGTTCCTTTAACGACTCGTACGCGCCTTTACATTCGATGCTACTTCTAGACTCATAAAAAGTTTCAAAAATTATTGTTTAACAAATTAGAATTTCCATTTAACGTTTTTATACTCCAAGGGCGGCGGTAGTGTGACACATTCCTT
**************************************************...........(((((((.((((.....))))..)))))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 O002
Head
............................................................................................................................................CCGGCAGTTGTGTGACACA...... 19 3 7 0.14 1 1 0 0
.............................................................................................................................TTTTATTCTACAAGGTCGGC.................... 20 3 12 0.08 1 0 1 0
......................................................................ATCATAAAAAGTTGCAAA............................................................................. 18 2 20 0.05 1 0 0 1

Generated: 04/23/2015 at 01:49 PM