ID:

dsi_12037

 Coordinate:

4:495270-495419 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.5 -25.5 -25.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
DNAREP1_DMRCHelitron-

Sense Strand Reads

AAAAACTGTCAAAAACAATTTTGGCCAAATACCTAGTCGCTTAAAACTGTCACGCCCACACCAATTTAAAAAAAAGGAGCACACTGCTGTTATAGTTCCCGAGAACACAGGGATATACAGACAGGCAAACAGATTGCCGGATCAGTCTCAGGCTCGTAGATTAAAATCGTTTTTTAAATTCGTTGAAAAAAATGTAACAGGATCAGAATCACCAGCCGAGTCGATACGTCCGTCTGCCCCAGTGAATGTT
**************************************************.........((.(((((((((((...((((..((((((((.(((..((((.........)))))))))))...(((((.....)))))....)))).....))))..............))))))))))).)).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
...........................................................................................................................................................................TTTTAAATGCGTTGAAAAAAA.......................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................................AAACAGATTGCCGGATCAGTC....................................................................................................... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTTTTAAATGCGTTGAAAAAA........................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTAAATGCGTTGAAAAAA........................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................AAACAGATTGCCGGATCA.......................................................................................................... 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................TTTTTTAAATGCGTTGAAAAA............................................................ 21 1 2 1.50 3 1 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................CAGAATCACCAGCCGAGTCGA.......................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................AATTCGTTGAAAAAAATGTAACAGGAT............................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................AACAGATTGCCGGATCAG......................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................ACCTAGTCGCTTAAAACTGTCAC..................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................AATGTAACAGGATCAGAATCACCAGCCG................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................TGTAACAGGATCAGAATCACCAGC.................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TCGATGCGTCCGTCTGCCCCA......... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................CAGGGATATACAGACAGGCAAACAGAT.................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................ACAGGATCAGAATCACCAGTA................................. 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGTCCGTCTGCCCCAGTGAAT... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TTTTTAAATGCGTTGAAAAAAAA......................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................CGAGTCGATACGTCCGTCTGC............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................AAACAGATTGCCGGATCAGT........................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................TAGTTTTTTAAATTCGTTGTAAA............................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................TTTTTTAAATGCGTTGAAAAAAA.......................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AATGTAACAGGATCAGAATCACCAGC.................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TTAAATGCGTTGAAAAAAAT......................................................... 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TTTAAATGCGTTGAAAAAA........................................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TCTTAAATGCGTTGAAAAAAA.......................................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TTAAATGCGTTGAAAAAA........................................................... 18 1 4 0.50 2 0 0 0 0 1 0 0 0 1
............................................................................................................................................................................TTTAAATGCGTTGAAAAA............................................................ 18 1 6 0.17 1 1 0 0 0 0 0 0 0 0
...............................................................ATTTAAAAATAAGGAGCC......................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTTTTGACAGTTTTTGTTAAAACCGGTTTATGGATCAGCGAATTTTGACAGTGCGGGTGTGGTTAAATTTTTTTTCCTCGTGTGACGACAATATCAAGGGCTCTTGTGTCCCTATATGTCTGTCCGTTTGTCTAACGGCCTAGTCAGAGTCCGAGCATCTAATTTTAGCAAAAAATTTAAGCAACTTTTTTTACATTGTCCTAGTCTTAGTGGTCGGCTCAGCTATGCAGGCAGACGGGGTCACTTACAA
**************************************************.........((.(((((((((((...((((..((((((((.(((..((((.........)))))))))))...(((((.....)))))....)))).....))))..............))))))))))).)).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
.............................................................................................................CCCTATATGTCTGTCCGTTTGTCT..................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0
........AGTTTTTGTTAAAACCGGTTTATGGAT....................................................................................................................................................................................................................... 27 0 1 2.00 2 0 1 1 0 0 0 0 0
...............................................................................................................................TTGTCTAACGGCCTAGTCAGA...................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................GACGACAATATCAAGGGCTCT.................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................CCTCGTGTGACGACAATATCAAGGGCTCT.................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................CGTGTGACGACAATATCAAGGGCTGT.................................................................................................................................................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................AGTGACGACAATATCAAGGGCTCT.................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................GGTCGGCTCAGCTATGCAG.................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTAGTCTTAGTGGTCGGCTCA............................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................TCGGCTCAGCTATGCAGGCAG................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0
.......................................................................................................TTGTGTCCCTATATGTCTGTCCGTTTGT....................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................GCGAATTTTGTCAGTGCGGGT................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0
..................................TCAGCGAATTTTGACAG....................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................TTTTTTTACATTGTTCAGGTCTT.......................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................CGTCTTAGTGGTCGGC................................ 16 1 8 0.13 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................TTTAAGCAACTTTTT............................................................ 15 0 10 0.10 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................TGTCCAAGTCTTAGCGG..................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 1
.................................................................AATTTTTTTACCGCGTGTTA..................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:495220-495469 - dsi_12037 AAAAA------CTGTCAAAAA--CAATTTTG------------GCCAAAT----------------------------------------------------------------------ACCTA---GTCGCTTAAAACTGTCAC--------------------------------------------------------------------------GCCCACACCAATTTAAAAAAAAGGAGCACACTGCTGTTATAGTTCCCGAGAAC---------------------------ACAGG------------------------GATATACAGACAGGCAAACAGATTGC----------------------CGGATCAGTCTCAGGCTCGTAGATTAAAATCGTTTTTTAAATTCGTTGAAAAAAATGTAACAGG--------------------------------------------------------ATCAGAA-----TCACCAGCCGAGTCGATA------C-----GTCCGTCTGCC------------CCAGTGAATGTT
droSec2 scaffold_139:67406-67652 + GGTGA------GAGGGAAAAA--CAACTTAATTTATTATTCATACAAAATTAGAAAAGCGCTATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTGGGGCAAACGATTAAAT--------GTAAAAAAATATTTCTTAGGTTATAAACCAAACCATTTTTATACATGTTACTCGTAGAGTTAGAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAACAGTTTCCGA-------------------------------------------A-----TATATAGCCGAGTCGATCTAGCCC-------TTCGTCTGTC------------CGTATAAACGTC
dm3 chr4:682956-683129 - AAAAA------CTGCCAAAAA--CAATTTTA------------ACCAAAT----------------------------------------------------------------------ACCTACAAATCGTTCAAAACTGTAAC--------------------------------------------------------------------------GCCCATATCAATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACAT----------------------AAACCCTATGTAGTATATACATACATATGTATGTGTCTAGATTAGAAAGAAACACCCATCCGAGTTGATA------C-----TTCCGTCTGCC------------CCTATGAATGTT
droEre2 scaffold_4929:23551469-23551735 + CAAAA------CTGCCGCGGCCACAATTTTG------------AA----------AAATGTTATGCTATTTTTC-CACTT-----------------------TTTTATTAGTCTTGTACA----------TTTCTAAACTGCCAC--------------------------------------------------------------------------GGCCACACTT--TT----------------------AAAAAAT-------------------------------------------------------------------------------------------T----------------------TGTTTATACACGTTACTCGTAGAGTAAACGAGTATACTGTA-------GAAAATGTATAATATGCAGAAGGAAGCGTTTCCGACCATATTAAGTATAAATATTC-------------TTGACCAG-G-----TCAATAGCCGAGTCGAACTGACTAAACAGCGTCCGTCCGTC--------TGTCCGTATGAACACC
droYak3 2L:20722475-20722790 + CAAAA------CTGCCACACACACACTTTTG------------GGCACTT----------ACAATC----------------------------------------------------------------------TATTTGCCACGCCCACACTAACGCCCACAAACAGCC-----------AAAAA-------CTGACAGTGTTGAAATTTTTCTTTCGC------------------------------------------------------------AATTCTACTAGCTGAGTAACAGGTATTAGATAGTCGGGGAACTCGACTA----------------------------------AAGCGTTCTCTCTTTTTATACCCGTTACTCGTAGAATAAAAGGGTATACTACATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCATTTCCGACC---------ATATATATTC-------------TTGATCAGGA-----TCAATAGCCGAGATGATCTGGCCAT-----GTCCGTCCCTC----TGTC----C--------GTA
droEug1 scf7180000409759:252242-252491 - GAACT------ATAACAGATA--CACT------------------------------------------------------------------------------------------------------------------------------ATAACGCCCACAAATCACGATCAGTTACTCAAAATGCTTTCTCTGACA--------------------------------------------------------------------------------------------------------------ATAGGTGGCGCATTCGACTA----------------------------------TAGCGTTTCCTCTTGTTATACCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGATAGCAGGAAGCGTTTGCGACCCTATAAAATATATATATTC-------------TTCATCAGGA-----TCAATAGCGAAGTCGATTGAGCCAT-----GTCCGTCTGTC------------C-----------
droBia1 scf7180000297182:72720-72812 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTAGAGTAAAAGGGTATACTAGATTCGTTAGAAAGTCTGTAACAGG--------------------------------------------------------TTCAGGA-----TCACTAGCCGAGTCGATCTAGCCAT-----GTCCGTCTGTC------------C-----------
droTak1 scf7180000415513:16657-16964 - AAGAT------TTCCCACATA--TTATTTCA------------ACCGAGA----------------------------------------------------------------------TCC---------------------ACGCCCCCTCTAACGCCCGCAAACGA--------------------------------TTTTAAAATGTGTCTGGCGCCCACACCT-------------------------TAAAGAATTTCCGAGAAGTATAAATGCAATTTT-------------------------------------------------GTTGTGTATATTTATA----------------------CCTATTTATACCCGTTACTCGTAGAGTAATATGGTATATTGTATTCGTGCAAAAGTATGTAACAGGAAGAAGGATGCGTTTCCGACCCTATAAAATATATATGTTC-------------TTGATAAGGG-----TCACTAGCCGAGTCGATATAGCCAT-----GTCCGTCTGTC----TGTCTGTCTGTATGAACGCT
droEle1 scf7180000490110:11157-11303 + CATAG------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTACCGGAACTCGAAGAATAAAAGAGATTATTGCCTTCGCTGAAAAAAATGAAACTGGTAGAAAGTC------------------AGCTTATTTATTT-------------TTGATCAGGA-----TATATAGCCG-GTCTGTCTTTC--T-----CTCCGTATGTC--------CGACTTTATGAACGTG
droRho1 scf7180000771404:132-431 - AAACT------ATAAAAGCTA--GAAGATTG------------GC----------ATTTTGCATGCAGATTCTAGGACTTCTAGGAGTTTATATAATGGTAATATTTAATA--ATTGAATACCCATGAACTG---------------------------------------------------TAGA--------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTTTGTAAATAGATAAT----------------------TCATTATACCCGTTACTCGTAGACTAAAAGGGTATATTGTATTCGTGCAAAAGAATGTAACAGCTAGAAGTTAGCGTTTCCGACCCTATAAAGTATATATATTC-------------TTGATCAGGG-----TCACTAGCCGAGTCGATATAGCCAT-----GTCCATCTGTCCGTCTGTCCGTCCATATGAACGCT
droKik1 scf7180000301795:816-860 - G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCA-----TCACCAGCCGAGTCGATCTAGCCAT-----GTCCGTCTGTC------------C-----------
droWil2 scf2_1100000004887:541163-541340 - TTTCAAAAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACAA--------------------------ATTTTTATACCATACACCCATAGGGTGAAATGGTATATTAAAGTCGCCAAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATGTATTC-------------TTGATCAGGA-----TCAACAACCGAGTCGATCTAGCCAT-----GTCCGTCTGTC------------C-----------
droVir3 scaffold_12728:314627-314671 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCA-----TCAATAGCCGAGTCGATATAGCCAT-----GTCCGTCTGTC------------C-----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAAAA------CTGTCAAAAA--CAATTTTG------------GCCAAAT----------------------------------------------------------------------ACCTA---GTCGCTTAAAACTGTCAC--------------------------------------------------------------------------GCCCACACCAATTTAAAAAAAAGGAGCACACTGCTGTTATAGTTCCCGAGAAC---------------------------ACAGG------------------------GATATACAGACAGGCAAACAGATTGC----------------------CGGATCAGTCTCAGGCTCGTAGATTAAAATCGTTTTTTAAATTCGTTGAAAAAAATGTAACAGG--------------------------------------------------------ATCAGAA-----TCACCAGCCGAGTCGATA------C-----GTCCGTCTGCC------------CCAGTGAATGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................AAACAGATTGC----------------------CGGATCAGTC...........................................................................................................................................................................................2113.00330000000000000000
........................................................................................................................................................................................................................................................................................................................................................AAACAGATTGC----------------------CGGATCA..............................................................................................................................................................................................1812.00200200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAA-----TCACCAGCCGAGTCGA.................................................2111.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCGTTGAAAAAAATGTAACAGG--------------------------------------------------------AT...........................................................................2711.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AACAGATTGC----------------------CGGATCAG.............................................................................................................................................................................................1811.00110000000000000000
........................................................................................................................ACCTA---GTCGCTTAAAACTGTCAC--------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAACAGG--------------------------------------------------------ATCAGAA-----TCACCAGCCG.......................................................2811.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGG--------------------------------------------------------ATCAGAA-----TCACCAGC.........................................................2411.00100000010000000000
.............................................................................................................................................................................................................................................................................................................CAGG------------------------GATATACAGACAGGCAAACAGAT..............................................................................................................................................................................................................................2711.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGG--------------------------------------------------------ATCAGAA-----TCACCAGTA........................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GTCCGTCTGCC------------CCAGTGAAT...2111.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATA------C-----GTCCGTCTGC.........................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................AAACAGATTGC----------------------CGGATCAGT............................................................................................................................................................................................2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAACAGG--------------------------------------------------------ATCAGAA-----TCACCAGC.........................................................2611.00100000000001000000
droSec2
GGTGA------GAGGGAAAAA--CAACTTAATTTATTATTCATACAAAATTAGAAAAGCGCTATAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATTGGGGCAAACGATTAAAT--------GTAAAAAAATATTTCTTAGGTTATAAACCAAACCATTTTTATACATGTTACTCGTAGAGTTAGAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAACAGTTTCCGA-------------------------------------------A-----TATATAGCCGAGTCGATCTAGCCC-------TTCGTCTGTC------------CGTATAAACGTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCC-------TTCGTCTGTC------------CGT.........2040.2511000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGTTTCCGA-------------------------------------------A-----TATATAGCC........................................................2440.2511000
..............................................................................................................................................................................................................................................................................................................................................................................................ATACATGTTACTCGTAGAGTT...........................................................................................................................................................................2150.2010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGG.....................................................................................................................................23200.1020020
...................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGGTATACTAGATTCGTT......................................................................................................................................................21130.0810001
....................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTATACTAGATTCGTTG.....................................................................................................................................................21140.0710100
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAAAAGTATGTAACAGGCAGA.................................................................................................................................25200.0511000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAAAGTATGTAACAGGCAG..................................................................................................................................25200.0511000
dm3
AAAAA------CTGCCAAAAA--CAATTTTA------------ACCAAAT----------------------------------------------------------------------ACCTACAAATCGTTCAAAACTGTAAC--------------------------------------------------------------------------GCCCATATCAATTTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACAT----------------------AAACCCTATGTAGTATATACATACATATGTATGTGTCTAGATTAGAAAGAAACACCCATCCGAGTTGATA------C-----TTCCGTCTGCC------------CCTATGAATGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTATATACATACATATGT.......................................................................................22255.00110000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030511300003100100000004000000000000000000000000000020100000000000003800000000002000002000200002000000000002000000000128000000000000000000002910003001000000000000000101250
..........................................................................................................................CTACAAATCGTTCAAAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................21111.00110000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102101100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTGATA------C-----TTCCGTCTGC.........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCTAGATTAGAAAGAAA.................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
...........................................ACCAAAT----------------------------------------------------------------------ACCTACAAATCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGTCTAGATTAGAAAGA...................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTATATACATACATATGT.......................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
AAAAA------CTGCCAAAAA--CAATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CCAAAT----------------------------------------------------------------------ACCTACAAATCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------------------AAACCCTATGTAGTATATA..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACACCCATCCGAGTTGA.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTGTCTAGATTAGA.......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................AAAAA--CAATTTTA------------ACCAAAT----------------------------------------------------------------------ACCTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCTAGATTAGAAAGAAAC................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAAAGAAACACCCATCC........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTCTAGATTAGAAAGAAA.................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGATA------C-----TTCCGTCTG..........................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGATA------C-----TTCCGTCTGC.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTCTGCC------------CCTATGAATG..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...............................................AAT----------------------------------------------------------------------ACCTACAAATCGTTCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTATATACATACATATGTT......................................................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------C-----TTCCGTCTGCC------------CCTATGAATG..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CCTACAAATCGTTCAAAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAGTTGATA------C-----TTCCGTCT...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................TTA------------ACCAAAT----------------------------------------------------------------------ACCTACAAATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACAAATCGTTCAAAACTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAGTTGATA------C-----TTCCGTC............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTATATACATACATATGC.......................................................................................2230.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTATATACATACATATGA.......................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTATATACATACATATGG.......................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTATATACATACAT...........................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAAAA------CTGCCGCGGCCACAATTTTG------------AA----------AAATGTTATGCTATTTTTC-CACTT-----------------------TTTTATTAGTCTTGTACA----------TTTCTAAACTGCCAC--------------------------------------------------------------------------GGCCACACTT--TT----------------------AAAAAAT-------------------------------------------------------------------------------------------T----------------------TGTTTATACACGTTACTCGTAGAGTAAACGAGTATACTGTA-------GAAAATGTATAATATGCAGAAGGAAGCGTTTCCGACCATATTAAGTATAAATATTC-------------TTGACCAG-G-----TCAATAGCCGAGTCGAACTGACTAAACAGCGTCCGTCCGTC--------TGTCCGTATGAACACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CAAAA------CTGCCACACACACACTTTTG------------GGCACTT----------ACAATC----------------------------------------------------------------------TATTTGCCACGCCCACACTAACGCCCACAAACAGCC-----------AAAAA-------CTGACAGTGTTGAAATTTTTCTTTCGC------------------------------------------------------------AATTCTACTAGCTGAGTAACAGGTATTAGATAGTCGGGGAACTCGACTA----------------------------------AAGCGTTCTCTCTTTTTATACCCGTTACTCGTAGAATAAAAGGGTATACTACATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCATTTCCGACC---------ATATATATTC-------------TTGATCAGGA-----TCAATAGCCGAGATGATCTGGCCAT-----GTCCGTCCCTC----TGTC----C--------GTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAGA.................................................................................................................................27201.0521020000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAGTATGTAACAGGCAGAAGG..............................................................................................................................26200.5010001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC-------------TTGATCAGGA-----TCAATAGCCGAG.....................................................27200.40808000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------TTGATCAGGA-----TCAATAGCCGAGA....................................................2680.13101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTC-------------TTGATCAGGA-----TCAATAGCCG.......................................................26200.10202000000000
...................................................................................................................................................................................................................................................................................................................TTAGATAGTCGGGGAACTCGA......................................................................................................................................................................................................................................................21200.10200000110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTC-------------TTGATCAGGA-----TCAATAGC.........................................................28200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTAGAATAAAAGGGTATACT...............................................................................................................................................................24200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCGTTGAAAAGTATGT...........................................................................................................................................20200.05100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCGTTACT....................................................................................................................................................................................19200.05100010000000
..............................................................................................................................................................................................................................................................................................................................GGGAACTCGACTA----------------------------------AAGCGTTCT........................................................................................................................................................................................................22200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTAGAATAAAAGGGTATACT...............................................................................................................................................................25200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATTTCC....................................................................................................................26200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TACCCGTTACTCGTAGAATAAAAGGG.....................................................................................................................................................................26200.05100000000001
.................................................................................................................................................................................................................................................................................................................TATTAGATAGTCGGGGAACT.........................................................................................................................................................................................................................................................20200.05101000000000
...............................................................................................................................................................................................................................................................................................................GGTATTAGATAGTCGGGGAAC..........................................................................................................................................................................................................................................................21200.05110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................ATACCCGTTACTCGTAGAATAA..........................................................................................................................................................................22200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TACATTCGTTGAAAAGTATGTAAC........................................................................................................................................24200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATACTACATTCGTTGAAAAGT...............................................................................................................................................21200.05100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTACATTCGTTGAAAAGT...............................................................................................................................................23200.05100000010000
..............................................................................................................................................................................................................................................................................................................................GGGAACTCGACTA----------------------------------AAGCGT...........................................................................................................................................................................................................19200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TATACCCGTTACTCGTAGAATAAAAGG......................................................................................................................................................................27200.05101000000000
droEug1
GAACT------ATAACAGATA--CACT------------------------------------------------------------------------------------------------------------------------------ATAACGCCCACAAATCACGATCAGTTACTCAAAATGCTTTCTCTGACA--------------------------------------------------------------------------------------------------------------ATAGGTGGCGCATTCGACTA----------------------------------TAGCGTTTCCTCTTGTTATACCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGATAGCAGGAAGCGTTTGCGACCCTATAAAATATATATATTC-------------TTCATCAGGA-----TCAATAGCGAAGTCGATTGAGCCAT-----GTCCGTCTGTC------------C-----------SizeHit CountTotal NormTotal
No Reads
droBia1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTAGAGTAAAAGGGTATACTAGATTCGTTAGAAAGTCTGTAACAGG--------------------------------------------------------TTCAGGA-----TCACTAGCCGAGTCGATCTAGCCAT-----GTCCGTCTGTC------------C-----------SizeHit CountTotal NormTotal
No Reads
droTak1
AAGAT------TTCCCACATA--TTATTTCA------------ACCGAGA----------------------------------------------------------------------TCC---------------------ACGCCCCCTCTAACGCCCGCAAACGA--------------------------------TTTTAAAATGTGTCTGGCGCCCACACCT-------------------------TAAAGAATTTCCGAGAAGTATAAATGCAATTTT-------------------------------------------------GTTGTGTATATTTATA----------------------CCTATTTATACCCGTTACTCGTAGAGTAATATGGTATATTGTATTCGTGCAAAAGTATGTAACAGGAAGAAGGATGCGTTTCCGACCCTATAAAATATATATGTTC-------------TTGATAAGGG-----TCACTAGCCGAGTCGATATAGCCAT-----GTCCGTCTGTC----TGTCTGTCTGTATGAACGCTSizeHit CountTotal NormTotal
No Reads
droEle1
CATAG------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTACCGGAACTCGAAGAATAAAAGAGATTATTGCCTTCGCTGAAAAAAATGAAACTGGTAGAAAGTC------------------AGCTTATTTATTT-------------TTGATCAGGA-----TATATAGCCG-GTCTGTCTTTC--T-----CTCCGTATGTC--------CGACTTTATGAACGTGSizeHit CountTotal NormTotal
No Reads
droRho1
AAACT------ATAAAAGCTA--GAAGATTG------------GC----------ATTTTGCATGCAGATTCTAGGACTTCTAGGAGTTTATATAATGGTAATATTTAATA--ATTGAATACCCATGAACTG---------------------------------------------------TAGA--------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTTTGTAAATAGATAAT----------------------TCATTATACCCGTTACTCGTAGACTAAAAGGGTATATTGTATTCGTGCAAAAGAATGTAACAGCTAGAAGTTAGCGTTTCCGACCCTATAAAGTATATATATTC-------------TTGATCAGGG-----TCACTAGCCGAGTCGATATAGCCAT-----GTCCATCTGTCCGTCTGTCCGTCCATATGAACGCTSizeHit CountTotal NormTotal
No Reads
droKik1
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCA-----TCACCAGCCGAGTCGATCTAGCCAT-----GTCCGTCTGTC------------C-----------SizeHit CountTotal NormTotal
No Reads
droWil2
TTTCAAAAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACAA--------------------------ATTTTTATACCATACACCCATAGGGTGAAATGGTATATTAAAGTCGCCAAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATGTATTC-------------TTGATCAGGA-----TCAACAACCGAGTCGATCTAGCCAT-----GTCCGTCTGTC------------C-----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTC.....................................................................................................................23201.7034000340
......AAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACAA--------------------------ATTTT.................................................................................................................................................................................................2530.67202000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTCCGA..................................................................................................................26200.5010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------TTGATCAGGA-----TCAACAACCGAGT....................................................25200.45900090
.TTCAAAAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACA.................................................................................................................................................................................................................................2430.33101000
.TTCAAAAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACAA--------------------------ATT...................................................................................................................................................................................................2830.33101000
......AAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACAA--------------------------ATTTTT................................................................................................................................................................................................2630.33101000
...CAAAAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACAA--------------------------ATTT..................................................................................................................................................................................................2730.33100010
..TCAAAAACTAAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA--------------------------------------------------------------------AACAA--------------------------ATT...................................................................................................................................................................................................2730.33100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAGTATATGTATTC-------------TTGATCAG........................................................................2640.25100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCCGACCCCACAAAGTATATGTAT...............................................................................................2850.20101000
..........................................................................................................................................................................................................................................................................................................................................................................................................CATAGGGTGAAATGGTATATTAAA............................................................................................................................................................24200.15300030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCAT-----GTCCGTCTGTC------------C-----------24200.15300030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGCAGAAGGAA............................................................................................................................24200.10202000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATATGTATTC-------------TTGATCAGGA-----TC...............................................................25120.08101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATTC-------------TTGATCAGGA-----TCAA.............................................................25130.08101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTATTC-------------TTGATCAGGA-----T................................................................22140.07100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAAATGTATGTAACAGG.....................................................................................................................................20200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................TTTATACCATACACCCATAGGGT............................................................................................................................................................................23200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAGTCGATCTAGCCAT-----G..................................21200.05100010
droVir3
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCA-----TCAATAGCCGAGTCGATATAGCCAT-----GTCCGTCTGTC------------C-----------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCA-----TCAATAGCCGAGTCGATA...............................................24200.102000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCA-----TCAATAGCCGAGTCG..................................................21200.102000000000000000000000000000000020000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATATAGCCAT-----GTCCGT.............................27150.071000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATATAGC...........................................20200.051000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----TCAATAGCCGAGTCGATATAGC...........................................24200.051000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATAGCCAT-----GTCCGTCTG..........................25200.051000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATATAGCCAT-----G..................................21200.051000000000000000000000000001000000000000000000000000000000000000

Generated: 05/18/2015 at 11:52 PM