ID:

dsi_12000

 Coordinate:

2l:7631045-7631194 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.3 -25.3 -25.3

Flybase annnotation

exon [2l_7630911_7631044_-]; CDS [2l_7630911_7631044_-]; three_prime_UTR [2l_7631189_7631301_-]; exon [2l_7631189_7631668_-]; intron [2l_7631045_7632549_-]

No Repeatable elements found

Sense Strand Reads

########################################################------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATAAATGTAAAGCCGATATCTGAAGACGAATGTTGAAATAAATGGTAGACTTTCTGTAATCAAGTGTTTCTAATGGGTAAGGTAGCTAATACGAACCGATTTCAGGAGATTGTGGAATAGGATTCGTTCCAAAGGTAAAAGCCGTTAAGTGCCTTTACAAAACAAGGTATTAATTTAAACTTTCTCAATTCAATTTCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGG
**************************************************....(((.((((....((((.((.(((.((...)).))).)).)))).)))).)))(((((((((((((.......))))))..(((....)))....((((((((........))))))))...................)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M023
head
 M024
male body		 M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O001
Testis
..TAAATGTAAAGCCGATATCTGAAGACGA............................................................................................................................................................................................................................ 28 0 1 4.00 4 3 0 0 0 1 0 0 0 0 0 0 0
.....................TGAAGACGAATGTTGAAATAAATGGTA.......................................................................................................................................................................................................... 27 0 1 4.00 4 2 1 0 0 0 0 0 0 0 1 0 0
...................TCTGAAGACGAATGTTGAAATAAATGGT........................................................................................................................................................................................................... 28 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0 0
.......GTAAAGCCGATATCTGAAGA............................................................................................................................................................................................................................... 20 0 1 3.00 3 0 0 2 0 0 0 0 0 0 0 1 0
.ATAAATGTAAAGCCGATATCTGAAGACGA............................................................................................................................................................................................................................ 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................TGTTGAAATAAATGGTAGACTTT.................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0
.....................TGAAGACGAATGTTGAAATAAATGGT........................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................GAGATTGTGGAATAGGATTCG........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................TAAATGGTAGACTTTCTATAAAAAA.......................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................AAATGGCAGACTTTCTGTAAA............................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...........AGCCGATATCTGAAGA............................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................TCTGAAGACGAATGTTGAAATAAA............................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................TATCTGAAGACGAATGTTGAAATAAA............................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................GATTGTGGAATAGGA............................................................................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................AAATAAATGGTAGACTTTCTGT................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................ATAAATGGTAGACTTTCTATA............................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..TAAATGTAAAGCCGATATCTGAAGACGAAT.......................................................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TATGGAACGCTGCATCATCTACATA... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......GTAAAGCCGATATCTGAAGACGAAT.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................AAATGGTAGACTTTCTGTAAA............................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................AACCGATTTCAGGAGATTGTG....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................AACCGATTTCAGGAGATTGTGGAA.................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................TATCTGAAGACGAATGTTGAAATA................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..TAAATGTAAAGCCGATATCTGAAGACGAA........................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................GAAATAAATGGTAGACTTTCT.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................AAATGCGCTGCCTCGTTTATGGAA..................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............GCCGATATCTGAAGA............................................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................CGAATGTTGAAATAAATGGTAGACTT..................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................CGAATGTTGAAATAAATGGTAGAC....................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........AGCCGATATCTGAAGACGAATGTTGAAA................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................ACGAATGTTGAAATAAA............................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..TAAATGTAAAGCCGATATCTGAAGT............................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....AATGTAAAGCCGATATCTGAAGACGAA........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......TGTAAAGCCGATATCTGAAGACGAA........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................ATGGTAGACTTTCTGTAAAAA........................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...AAATGTAAAGCCGATATCTGAAGACGAA........................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........AAGCCGATATCTGAAGA............................................................................................................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............CGATATCTGAAGACG............................................................................................................................................................................................................................. 15 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGCTTCGTTTATGGAA..................... 16 1 11 0.36 4 2 0 0 1 0 0 0 0 0 1 0 0
..............................................................................................................................GTTCCAAAGGTAAAAGGC.......................................................................................................... 18 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................AGGGTCGGGTAGCTAATAC............................................................................................................................................................. 19 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................TTGCAGGAGATTGTAGAA.................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................TAATGGGTAAGGTACCA.................................................................................................................................................................. 17 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................GTGGGATGGGATTCGTT......................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTATTTACATTTCGGCTATAGACTTCTGCTTACAACTTTATTTACCATCTGAAAGACATTAGTTCACAAAGATTACCCATTCCATCGATTATGCTTGGCTAAAGTCCTCTAACACCTTATCCTAAGCAAGGTTTCCATTTTCGGCAATTCACGGAAATGTTTTGTTCCATAATTAAATTTGAAAGAGTTAAGTTAAAGTCCACGGTTTACGCGACGGAGCAAATACCTTGCGACGTAGTAGATGTATCCC
**************************************************....(((.((((....((((.((.(((.((...)).))).)).)))).)))).)))(((((((((((((.......))))))..(((....)))....((((((((........))))))))...................)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
......................................TATCTACGATCTGCAAGACA................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0
.............................................................................................CTTGGCTAAAGTCCC.............................................................................................................................................. 15 1 7 0.14 1 0 1 0 0 0
..........................................................................................................................................................................................................................................GTAGTAGATGTATTC. 15 1 14 0.14 2 0 0 2 0 0
....................................................................................................................................................TCAGGGAAATGGTTTGTT.................................................................................... 18 2 8 0.13 1 0 0 0 1 0
...........................................................................................TGTTTGGCTAAAGTC................................................................................................................................................ 15 1 19 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:7630995-7631244 - dsi_12000 AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGGTAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTCTAATGGGTAAGGTA-----G------CTAATACGAA-CCGATTTCAGGAGATT-GT-----GGAATAGGATTCGTTCCA-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CGTTAAGT-----------------------------GCCTTTACA--AAACAAGGTATTAATT-TA--------------------------------AAC-TTTCTCA------------------ATTCAATTTCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGG
droSec2 scaffold_3:3399615-3399860 - AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGATAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTCTAATGGGTAAGG--------------CTAATACGAA-CCGATTTCAGGACATA--T----A-GAATAGGAAGCTTTCCA-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------TGTTAAGT-----------------------------GCCTTTACA--AAACAAGGTATTAATT-TA--------------------------------AAC-TTTCTCA------------------ATTCAATTTCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGG
dm3 chr2L:7884739-7884987 - AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGGTAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTCTAATGGGTAAGGTA-----G------CAAATACGAT-CCGATTTCAGGACATA--T----A-GAATAGGATGCTGTCTC-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CGTTGAGT-----------------------------GTCTTTAAA--AAACAAGGAATTAATTTTA--------------------------------AAC-TTTCC-------------------CTTTAAATTTCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGG
droEre2 scaffold_4929:16806671-16806927 - CA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-ATGGTAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTAGAATGGGTCCTT-ACTAC--CTTTAGTTAAAACGAA-TCGATTTCAGGACAT---T----A-GAATAGGAAGCTTTACA-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CGTCAAGT-----------------------------GCCTTTAAA--AAACAAGGTATTAATTATA--------------------------------AAC-ATTCCG------------------CTTGTAATTACAGGTGCAAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATTTATATTGGG
droYak3 2L:5010622-5010874 + AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-ATGGTAGAC--TT-TCTG--TAC--TCA---------A-GTGTTTCGAATGGGTAAGGTA-----G------TTAATACGAA-TCGATTTCAGGACATA--T----AGAAATAGGAAGCTTTAGA-----------------------------------------------------AAGGTAAAA----------------------------------------------------TC--------------------------AGTTAAGT-----------------------------GTTATTAAATGAAAGAAGGTATTAACTATA--------------------------------AAC-TTTCCC------------------CTTGCAATTACAGGTGCAAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTATATAGGG
droEug1 scf7180000409463:852695-852952 + AA--TAAATGTAAAGCCGAA-ATAT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAAGTAGAC--TT-TCTA--AGT--TCA---------A-GTGT-TTTAATGGGTGAATAAGGAAA-TTTCAGTAAAA-GTTG-ATAATTTTGGAAAATT-CT-----TTATTGGGAAATTTTTCA-----------------------------------------------------AAGGTAAAA-------------CATTTG----------------------------------------------------------------TATCT-----------------------------GCCTTTTAAT--AAATAAGTATTAATCATC--------------------------------ACC-TTTC--------------------CTTCTATTTGTAGGTGCAAAATGCGCTGCTTCGTTTATGGAACGCTGCATCATCTTTATAGGC
droBia1 scf7180000301518:654128-654373 + AA--CAAATGTGAAGCCGAA-GCCC-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGATA-AC--TT-TCTA--TAA--ACATGCTT----T-GAGTTCTTATTGGGTGAGGA-GGAGA-TTAAAGTTAAGTTGAG-CTGATTTCAGGTATGA----------------------TCTC-------------------------------------------------AAGCCAGGTACAA----------------------TAATTTAATG----------------------------------------------------AATA-----------------------------GACTTTAAAA--AAGTAG----TAA---CA--------------------------------GAC-TC--C-------------------CTTTTATTTCCAGGTGCAAAATGTGCTGCCTCATTCATGGAACGCTGCATTATCTTTATAGGC
droTak1 scf7180000415876:445993-446256 + AA--TA-ATGTAAAGCCGAA-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGGTAGAC--TT-TCTG--TAA--TCA---------A-GAGTTTTTAATGGGTGAGGAAGGAGA-TCAGAGTGAGA-GGATACAGATTTCAGGAAATATGT-----TTAATTGGAAGTTTTAGT-----------------------------------------------------AAGGTAAAT----------------------TACTTTTATA----------------------------------------------------TATT-----------------------------GCCCTTAAAT--AAATAGGAACTAATAATA--------------------------------AAC-TCTTC-------------------CTTTTATTTCCAGGTGCAAAATGTGCTGCCTCGTTTATGGAACGCTGCATCATCTTTATAGGC
droEle1 scf7180000491028:1128698-1128966 + AA--TAAATGTAAAGCCGAA-ATTT-----------------------------------------------------GAAGACGAATGT----TC-AAATAAAAAGGTAGAC--TT-TCTT--AAAGCGTA---------A-GACTTTTCAATGGGTTAGGTAAAAGA-TTAGAATGCATACAGG-ACGATTTCAGGGAATATTTATTTA-AAATAAGAAGTCTTCGA-----------------------------------------------------AAGGTAAAG----------------------------------------------------GT--------------------------CTTTTATTTCCACAAAGTAAATTCT---------------------------TGGCTAATAACACTA--------------------------------AAC-TCTCC----------------------CTTTTTACAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTTTATAGGC
droRho1 scf7180000766509:27374-27628 + AA--CAAATGTAAAGCCGAA-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGGTAGAC--TTTTCTG--TAAGCACA---------A-GGTTTTTTAATGGGCTATGAA-----GA-----ATGATAGAAT-GTTATTTCAGGAAATATGT-----ATAAAATGAAGGTTTCAA-----------------------------------------------------AAGGTAATTGTTTGCC---------------------------------------------------------------------------ATGATC-----------------------------CTCTTTAAAT--AAATGGCTAGTAATACTA--------------------------------AAC-TTTC----------------------CTTTTTTTCAGGTGCCAAATGCGCTGCATCTTTTATGGAACGCTGCATCATCTATATAGGC
droFic1 scf7180000454115:699929-700177 - AA--TAAATGTAAAGCCGAA-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGGTATAC--TT-TCTA--TGAGCTCA---------A-GAGTTT-TAATGGGTAAGGAA-----ATA----TGTATAATAG-ACTATTTCGGGAAAGACGT-----GAAATGGGAGGTCTTATA-----------------------------------------------------AAGGTAATG-----------------------------------------------------T--------------------------CGTTTATTT----------------------------CACTTTAAAT--AAATAGATGTTAACACTA--------------------------------ATT-T------------------------CTTCATTTACAGGTGCAAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTTTATAGGT
droKik1 scf7180000302570:159757-160082 + AA--AATATGTAAAAGCAAATTTCTAAAGAGATTCTAAGGAATGTACATTCGTATAAATGTTAAATAGAAATGTTTAAGAAGAGGAATGTTTATTC-AAATAA-AATGTAGAC--TT-TCTA--GGAAG-GAAATATTGAGA-GGTTTTTGAATGGGTCAAGGA-----GA----------------------------------------------------------------------------------------------------------------AGGGAGAG-------------------------GTTTT--TGCT-------TTATATT----------------------------------------------------TCTAGGCTGGTGATTATATTTATA--TGAGAAGGTATTATTTATTATATTAAAACAAAACTGATCTAATAATAATCATATTTTTCT-------------------CTTTACTTTTCAGGTGCCAAGTGCGCTGCCTCATTTATGGAACGCTGCATCATCTTCATAGGC
droAna3 scaffold_12943:1419195-1419433 + AA--CTAATGTACACTCAC--------------------------------------------------------------AAGGA-AAT----TT-CAATAA-ATTGTAGAA--AC-TCTA--TAAATTGT---------AAG-CTTTTTAATTGGTAAAATTAGAGA-TTTAA--------------------AGGATATT--T----T---------------CTATAAGGGATGACTAGAGTATAAGAAAG----------TTTGTATGTATTTAAGC----------------------CAATCG----------------------------------------------------------------TATAG-----------------------------ACCA----------------TGTAATGTAT--------------------------------GAG-TTTT--------------------GTTGTTGTTTTAGGTGCAAAATGTGCCGCGTCTTTTATGGAACGCTGCATAATCTACATTGGG
droBip1 scf7180000396728:1784074-1784327 - AA--CTAATGTACACTCA----CCT-----------------------------------------------------GGA------AAT----TT-CAATAA-AATATAGAA--AC-TGTG--TAAATTGT---------AAG-CTTTTTATTTGGTTAAATGAGAGA-TTTAAATGAA---------------AGGACATT--T----T---------------CTATAGGGAATGACAAAAGTATAAGAAAGGATACATATGTTTG-------------TAGGTAA----------------------CTTAA---------------------------G----------------------------------------------------------------------------------------ACT-TA--------------------------------TAT-TTTTTCATTTAATGTATTAGTATTGTTGTTGTTTTAGGAGCCAAATGTGCCGCGTCTTTTATGGAACGCTGTATAATCTACATTGGA
dp5 4_group3:5409384-5409587 + ATTATACCTGTAAAGCCGAA-ACCT-----------------------------------------------------CAAAACGAATGA-AAACT-AAATAA-ATGGAGAAC--TT-TCTG--TAAACTTG---------A-GACTTTTCAATTGGAGCAGAGCTAC----------------------------------------------------------CTC-----------------------------------------------------CAGGTAAAG----------------------------------------------------GGTTTTAACTTGATTTTGGAGTAATCTT-----------------------------------------------------------------T----------------------------------TG-----TTG------------------GTTTTCTTGCAGGTGCCAAGTGTGCGGCATCTTTTATGGAGCGGTGCATCATCTACATAGGG
droPer2 scaffold_1:6899956-6900159 + ATTATACCTGTAAAGCCGAA-ACCT-----------------------------------------------------CAAAACGAATGA-AAACT-AAATAA-ATGGAGAAC--TT-TCTG--TAAACTTG---------A-GACTTTTCAATTGGAGCAGAGCTGC----------------------------------------------------------CTC-----------------------------------------------------CAGGTAAAG----------------------------------------------------GGCTTTAACTTGATTTTGGAGTAATCTT-----------------------------------------------------------------T----------------------------------TG-----TTG------------------GTTTTCTTGCAGGTGCCAAGTGTGCGGCATCTTTTATGGAGCGGTGCATCATCTACATAGGG
droWil2 scf2_1100000004516:3437552-3437719 + AT--TAACTGTAAAGCCTAT-AT-------------------------------------------------------------GAAAAT----TA-AAACAA-AAT---------T-TATATGTAA--ATG-A-------G-GAGTTTTCATTGCTAGGAG---------------------------------------------------------------------------------------------------------------------------------------------CCAAGTGAATCGG---------TATTTCAT-TTGTTTTGG--------------------GTATTCTT-----------------------------------------------------------------G----------------------------------TC-----TCT------------------AATCTGTTTCAGGAGCAAAATGT---------TTTATGGAACGCTGCATCATCTATATAGGC
droVir3 scaffold_12963:8650854-8651049 - TT--TAATTGTAA-GCCGAA-AGGT-----------------------------------------------------T--------ATC----CACAATAAA-ATGAAACAACTTT-TATATG-AAACTGG---------C-GACT-TTTAATGGGAACGTGTGG-----------------------------------------------------------------------------------------------------------------------------------CACAGCTCAGGTGAATTGA---------ATGCTTAA-ATGTCCCAA--------------------TTATTCAT-----------------------------------------------------------------G----------------------------------TC-----TAT-----------------ATCCACTTTGCAGGTGCCAAGTGCGCCGCTTCGTTTATGGAGCGCTGCATCATTTATATCGGA
droMoj3 scaffold_6500:2687521-2687708 + AT--TAACTGTAAATGGAAA-AGTT-----------------------------------------------------A---ACCAACAA----TA-AAATAA-ACGAAATT----T-TATATGAAA--TCT-G-------C-GAATTTTGAATGGGAAACCA-----------------------------------------------------------------------------------------------------------------------------------------------GGTGAATTTG---------ATTTTTAATAAGCTCAAA--------------------TGATAAAT-----------------------------------------------------------------G----------------------------------TC-----TTT----------------ATTTTCATTTACAGGTGCCAAATGCGCGGCTTCGTTTATGGAACGCTGCATCATTTACATAGGA
droGri2 scaffold_15252:13144982-13145172 + AT--TAATTGTAA-GCTG------------------------------------------------------------GAAAACTGCTGC----AC-AATAAA-ATGAGAGAA--TTTTTTAC-GAAACGAG---------C-GACTTTTTAATGGGCACAA---------------------------------------------------------------------------------------------------------------------------------------------TTAGGTGAATTAATTCAT--TAAT-------TTATATT-----------------------------------------------------------------------------------TGCTAATTGCATTT--------------------------------GTA-AT----------------------TTTTATCTTGCAGGTGCCAAGTGCGCCGCTTCGTTTATGGAACGCTGCATCATCTACATTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGGTAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTCTAATGGGTAAGGTA-----G------CTAATACGAA-CCGATTTCAGGAGATT-GT-----GGAATAGGATTCGTTCCA-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CGTTAAGT-----------------------------GCCTTTACA--AAACAAGGTATTAATT-TA--------------------------------AAC-TTTCTCA------------------ATTCAATTTCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.00400000003000010000
........................T-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.00400000012010000000
......................TCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300000011100000000
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00300010000200000000
.A--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.00200000020000000000
.......................................................................................TGT----TG-AAATAA-ATGGTAGAC--TT-T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000000001010000
........................T-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
.....................................................................................................................................................................................................GAGATT-GT-----GGAATAGGATTCG.................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............AGCCGAT-ATCT-----------------------------------------------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000100000000
......................TCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
...................T-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................................................................................................................................................................................................GATT-GT-----GGAATAGGA.....................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
.................................................................................................AAATAA-ATGGTAGAC--TT-TCTG--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
....TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACGCTGCATCATCTACATA...2511.00100000001000000000
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.....................................................................................................AA-ATGGTAGAC--TT-TCTG--TAA--A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
........................................................................................................................................................................................AA-CCGATTTCAGGAGATT-GT-----G.............................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
........................................................................................................................................................................................AA-CCGATTTCAGGAGATT-GT-----GGAA..........................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
...................T-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
....TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
...............................................................................................G-AAATAA-ATGGTAGAC--TT-TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCGCTGCCTCGTTTATGGAA.....................2411.00100000000001000000
..............GCCGAT-ATCT-----------------------------------------------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...................................................................................CGAATGT----TG-AAATAA-ATGGTAGAC--TT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
...................................................................................CGAATGT----TG-AAATAA-ATGGTAGAC--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.............AGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..................................................................................ACGAATGT----TG-AAATAA-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000001000000000
....TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
......AATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
........TGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.....AAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
............AAGCCGAT-ATCT-----------------------------------------------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
................CGAT-ATCT-----------------------------------------------------GAAGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
droSec2
AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGATAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTCTAATGGGTAAGG--------------CTAATACGAA-CCGATTTCAGGACATA--T----A-GAATAGGAAGCTTTCCA-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------TGTTAAGT-----------------------------GCCTTTACA--AAACAAGGTATTAATT-TA--------------------------------AAC-TTTCTCA------------------ATTCAATTTCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
......................TCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGGTGCCAAATGCG......................................1911.0010010
.......................................................................................................................................................................................................CATA--T----A-GAATAGGAAGCTTTCCA-----------------------------------------------------AAGG...................................................................................................................................................................................................................................................................................2711.0011000
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
dm3
AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-ATGGTAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTCTAATGGGTAAGGTA-----G------CAAATACGAT-CCGATTTCAGGACATA--T----A-GAATAGGATGCTGTCTC-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CGTTGAGT-----------------------------GTCTTTAAA--AAACAAGGAATTAATTTTA--------------------------------AAC-TTTCC-------------------CTTTAAATTTCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTACATAGGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..............................................................................................TG-AAATAA-ATGGTAGAC--TT-TCTG--TAA--A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCGCTGCCTCGTTT...........................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CATA--T----A-GAATAGGATGCTGTCTC-----------------------------------------------------A......................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAGGACATA--T----A-GAATAGGATGCTGT...............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTATGGAACGCTGCATCATCTACA.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................ACGAATGT----TG-AAATAA-ATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................ACGAATGT----TG-AAATAA-ATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TAA-ATGGTAGAC--TT-TCTG--C....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GATGCTGTCTC-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CG............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTCGTTTATGGAAC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AGCCGAT-ATCT-----------------------------------------------------GAAGACGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........AAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....................................................................................................TAA-ATGGTAGAC--TT-TCTG--TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GACATA--T----A-GAATAGGATGCTGTCTC-----------------------------------------------------AA.....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTATGGAACGCTGCATCATC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GTAAAA----------------------------------------------------GC--------------------------CGTTGAGT-----------------------------GTCTTTAAA--A.............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................TAA-ATGGTAGAC--TT-TCTG--TAA--A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGGTAGAC--TT-TCTG--TAA--AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1931.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........AAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGTTTATGGAACGCTGCATCATC.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AGGACATA--T----A-GAATAGGATGCTG................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AATGTAAAGCCGAT-ATCT-----------------------------------------------------GAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................ATAGGATGCTGTCTC-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------..............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................TGT----TG-AAATAA-ATGGTAGAC--TT-TCTG--G....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
AA--TAAATGTAAAGCCGAT-A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................AATAA-ATGGTAGAC--TT-TCTG--TAA--................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................ATA--T----A-GAATAGGATGCTGTCTC-----------------------------------------------------AAGGT..................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............AGCCGAT-ATCT-----------------------------------------------------GAAGACGAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
........................................................................................GT----TG-AAATAA-ATGGTAGAC--TT-TCTG--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............GCCGAT-ATCT-----------------------------------------------------GAAGACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................A---------A-GTGTTTCTAATGGGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........TAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GT----TG-AAATAA-ATGGTAGAC--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AGACGAATGT----TG-AAATAA-ATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................AATAA-ATGGTAGAC--TT-TCTG--TA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................T-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATAA-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CGAATGT----TG-AAATAA-ATGGTAGAC--TT-T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GT----TG-AAATAA-ATGGTAGAC--A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTCGTTTATGGAACG...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................ACGAATGT----TG-AAATAA-ATGGTAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AA-ATGGTAGAC--TT-TCTG--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGCCTCGTTTATGGAACG...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..................................................................................................................................................................................................CAGGACATA--T----A-GAATAGGATGCT.................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........TAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGTTTATGGAACGCTGC...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..............................................................................................................................A--TCA---------A-GTGTTTCTAATGGGTAAGGTA-----G------C................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GTAAAA----------------------------------------------------GC--------------------------CGTTGAGT-----------------------------GT.......................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................ATGT----TG-AAATAA-ATGGTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TC-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CGTTGAGT-----------------------------G........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................CAGGACATA--T----A-GAATAGGATG...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................ACGAATGT----TG-AAATAA-ATGGTAGAC--TT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GAT-ATCT-----------------------------------------------------GAAGACGAATGT----TG-AAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................TGT----TG-AAATAA-ATGGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AAGACGAATGT----TG-AAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAATGCGCTGCCTCGTTTATGG.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ATGGTAGAC--TT-TCTG--TAA--AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
droEre2
CA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-ATGGTAGAC--TT-TCTG--TAA--TCA---------A-GTGTTTAGAATGGGTCCTT-ACTAC--CTTTAGTTAAAACGAA-TCGATTTCAGGACAT---T----A-GAATAGGAAGCTTTACA-----------------------------------------------------AAGGTAAAA----------------------------------------------------GC--------------------------CGTCAAGT-----------------------------GCCTTTAAA--AAACAAGGTATTAATTATA--------------------------------AAC-ATTCCG------------------CTTGTAATTACAGGTGCAAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATTTATATTGGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................TGGGTCCTT-ACTAC--CTTTAGTT...............................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.................................................................................GACGAATGT----TC-AAATAA-ATGGTAGAC--T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
.............AGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TC-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.........................................................................................T----TC-AAATAA-ATGGTAGAC--TT-TC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
droYak3
AA--TAAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-ATGGTAGAC--TT-TCTG--TAC--TCA---------A-GTGTTTCGAATGGGTAAGGTA-----G------TTAATACGAA-TCGATTTCAGGACATA--T----AGAAATAGGAAGCTTTAGA-----------------------------------------------------AAGGTAAAA----------------------------------------------------TC--------------------------AGTTAAGT-----------------------------GTTATTAAATGAAAGAAGGTATTAACTATA--------------------------------AAC-TTTCCC------------------CTTGCAATTACAGGTGCAAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTATATAGGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.........GTAAAGCCGAT-ATCT-----------------------------------------------------GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...................................................................................................ATAA-ATGGTAGAC--TT-TCTG--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................GAT-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.....AAATGTAAAGCCGAT-ATCT-----------------------------------------------------GAAGACGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEug1
AA--TAAATGTAAAGCCGAA-ATAT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAAGTAGAC--TT-TCTA--AGT--TCA---------A-GTGT-TTTAATGGGTGAATAAGGAAA-TTTCAGTAAAA-GTTG-ATAATTTTGGAAAATT-CT-----TTATTGGGAAATTTTTCA-----------------------------------------------------AAGGTAAAA-------------CATTTG----------------------------------------------------------------TATCT-----------------------------GCCTTTTAAT--AAATAAGTATTAATCATC--------------------------------ACC-TTTC--------------------CTTCTATTTGTAGGTGCAAAATGCGCTGCTTCGTTTATGGAACGCTGCATCATCTTTATAGGCSizeHit CountTotal NormTotal
No Reads
droBia1
AA--CAAATGTGAAGCCGAA-GCCC-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGATA-AC--TT-TCTA--TAA--ACATGCTT----T-GAGTTCTTATTGGGTGAGGA-GGAGA-TTAAAGTTAAGTTGAG-CTGATTTCAGGTATGA----------------------TCTC-------------------------------------------------AAGCCAGGTACAA----------------------TAATTTAATG----------------------------------------------------AATA-----------------------------GACTTTAAAA--AAGTAG----TAA---CA--------------------------------GAC-TC--C-------------------CTTTTATTTCCAGGTGCAAAATGTGCTGCCTCATTCATGGAACGCTGCATTATCTTTATAGGCSizeHit CountTotal NormTotal
No Reads
droTak1
AA--TA-ATGTAAAGCCGAA-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGGTAGAC--TT-TCTG--TAA--TCA---------A-GAGTTTTTAATGGGTGAGGAAGGAGA-TCAGAGTGAGA-GGATACAGATTTCAGGAAATATGT-----TTAATTGGAAGTTTTAGT-----------------------------------------------------AAGGTAAAT----------------------TACTTTTATA----------------------------------------------------TATT-----------------------------GCCCTTAAAT--AAATAGGAACTAATAATA--------------------------------AAC-TCTTC-------------------CTTTTATTTCCAGGTGCAAAATGTGCTGCCTCGTTTATGGAACGCTGCATCATCTTTATAGGCSizeHit CountTotal NormTotal
No Reads
droEle1
AA--TAAATGTAAAGCCGAA-ATTT-----------------------------------------------------GAAGACGAATGT----TC-AAATAAAAAGGTAGAC--TT-TCTT--AAAGCGTA---------A-GACTTTTCAATGGGTTAGGTAAAAGA-TTAGAATGCATACAGG-ACGATTTCAGGGAATATTTATTTA-AAATAAGAAGTCTTCGA-----------------------------------------------------AAGGTAAAG----------------------------------------------------GT--------------------------CTTTTATTTCCACAAAGTAAATTCT---------------------------TGGCTAATAACACTA--------------------------------AAC-TCTCC----------------------CTTTTTACAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTTTATAGGCSizeHit CountTotal NormTotal
No Reads
droRho1
AA--CAAATGTAAAGCCGAA-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGGTAGAC--TTTTCTG--TAAGCACA---------A-GGTTTTTTAATGGGCTATGAA-----GA-----ATGATAGAAT-GTTATTTCAGGAAATATGT-----ATAAAATGAAGGTTTCAA-----------------------------------------------------AAGGTAATTGTTTGCC---------------------------------------------------------------------------ATGATC-----------------------------CTCTTTAAAT--AAATGGCTAGTAATACTA--------------------------------AAC-TTTC----------------------CTTTTTTTCAGGTGCCAAATGCGCTGCATCTTTTATGGAACGCTGCATCATCTATATAGGCSizeHit CountTotal NormTotal
No Reads
droFic1
AA--TAAATGTAAAGCCGAA-ATCT-----------------------------------------------------GAAGACGAATGT----TC-AAATAA-AAGGTATAC--TT-TCTA--TGAGCTCA---------A-GAGTTT-TAATGGGTAAGGAA-----ATA----TGTATAATAG-ACTATTTCGGGAAAGACGT-----GAAATGGGAGGTCTTATA-----------------------------------------------------AAGGTAATG-----------------------------------------------------T--------------------------CGTTTATTT----------------------------CACTTTAAAT--AAATAGATGTTAACACTA--------------------------------ATT-T------------------------CTTCATTTACAGGTGCAAAATGCGCTGCCTCGTTTATGGAACGCTGCATCATCTTTATAGGTSizeHit CountTotal NormTotal
No Reads
droKik1
AA--AATATGTAAAAGCAAATTTCTAAAGAGATTCTAAGGAATGTACATTCGTATAAATGTTAAATAGAAATGTTTAAGAAGAGGAATGTTTATTC-AAATAA-AATGTAGAC--TT-TCTA--GGAAG-GAAATATTGAGA-GGTTTTTGAATGGGTCAAGGA-----GA----------------------------------------------------------------------------------------------------------------AGGGAGAG-------------------------GTTTT--TGCT-------TTATATT----------------------------------------------------TCTAGGCTGGTGATTATATTTATA--TGAGAAGGTATTATTTATTATATTAAAACAAAACTGATCTAATAATAATCATATTTTTCT-------------------CTTTACTTTTCAGGTGCCAAGTGCGCTGCCTCATTTATGGAACGCTGCATCATCTTCATAGGCSizeHit CountTotal NormTotal
No Reads
droAna3
AA--CTAATGTACACTCAC--------------------------------------------------------------AAGGA-AAT----TT-CAATAA-ATTGTAGAA--AC-TCTA--TAAATTGT---------AAG-CTTTTTAATTGGTAAAATTAGAGA-TTTAA--------------------AGGATATT--T----T---------------CTATAAGGGATGACTAGAGTATAAGAAAG----------TTTGTATGTATTTAAGC----------------------CAATCG----------------------------------------------------------------TATAG-----------------------------ACCA----------------TGTAATGTAT--------------------------------GAG-TTTT--------------------GTTGTTGTTTTAGGTGCAAAATGTGCCGCGTCTTTTATGGAACGCTGCATAATCTACATTGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.A--CTAATGTACACTCAC--------------------------------------------------------------AAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........TGTACACTCAC--------------------------------------------------------------AAGGA-AAT----TT-CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
droBip1
AA--CTAATGTACACTCA----CCT-----------------------------------------------------GGA------AAT----TT-CAATAA-AATATAGAA--AC-TGTG--TAAATTGT---------AAG-CTTTTTATTTGGTTAAATGAGAGA-TTTAAATGAA---------------AGGACATT--T----T---------------CTATAGGGAATGACAAAAGTATAAGAAAGGATACATATGTTTG-------------TAGGTAA----------------------CTTAA---------------------------G----------------------------------------------------------------------------------------ACT-TA--------------------------------TAT-TTTTTCATTTAATGTATTAGTATTGTTGTTGTTTTAGGAGCCAAATGTGCCGCGTCTTTTATGGAACGCTGTATAATCTACATTGGASizeHit CountTotal NormTotal
No Reads
dp5
ATTATACCTGTAAAGCCGAA-ACCT-----------------------------------------------------CAAAACGAATGA-AAACT-AAATAA-ATGGAGAAC--TT-TCTG--TAAACTTG---------A-GACTTTTCAATTGGAGCAGAGCTAC----------------------------------------------------------CTC-----------------------------------------------------CAGGTAAAG----------------------------------------------------GGTTTTAACTTGATTTTGGAGTAATCTT-----------------------------------------------------------------T----------------------------------TG-----TTG------------------GTTTTCTTGCAGGTGCCAAGTGTGCGGCATCTTTTATGGAGCGGTGCATCATCTACATAGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................TAATCTT-----------------------------------------------------------------T----------------------------------TG-----TTG------------------GTTTTCTTGCAGG.................................................2612.0020000000020
......................................................................................................A-ATGGAGAAC--TT-TCTG--TAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
................CGAA-ACCT-----------------------------------------------------CAAAACGAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...ATACCTGTAAAGCCGAA-ACCT-----------------------------------------------------CAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
......................................................................................................A-ATGGAGAAC--TT-TCTG--TAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5011000000000
droPer2
ATTATACCTGTAAAGCCGAA-ACCT-----------------------------------------------------CAAAACGAATGA-AAACT-AAATAA-ATGGAGAAC--TT-TCTG--TAAACTTG---------A-GACTTTTCAATTGGAGCAGAGCTGC----------------------------------------------------------CTC-----------------------------------------------------CAGGTAAAG----------------------------------------------------GGCTTTAACTTGATTTTGGAGTAATCTT-----------------------------------------------------------------T----------------------------------TG-----TTG------------------GTTTTCTTGCAGGTGCCAAGTGTGCGGCATCTTTTATGGAGCGGTGCATCATCTACATAGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..TATACCTGTAAAGCCGAA-ACCT-----------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................ACT-AAATAA-ATGGAGAAC--TT-TCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............GCCGAA-ACCT-----------------------------------------------------CAAAACGAATGA-AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
droWil2
AT--TAACTGTAAAGCCTAT-AT-------------------------------------------------------------GAAAAT----TA-AAACAA-AAT---------T-TATATGTAA--ATG-A-------G-GAGTTTTCATTGCTAGGAG---------------------------------------------------------------------------------------------------------------------------------------------CCAAGTGAATCGG---------TATTTCAT-TTGTTTTGG--------------------GTATTCTT-----------------------------------------------------------------G----------------------------------TC-----TCT------------------AATCTGTTTCAGGAGCAAAATGT---------TTTATGGAACGCTGCATCATCTATATAGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....AACTGTAAAGCCTAT-AT-------------------------------------------------------------GAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
......ACTGTAAAGCCTAT-AT-------------------------------------------------------------GAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
TT--TAATTGTAA-GCCGAA-AGGT-----------------------------------------------------T--------ATC----CACAATAAA-ATGAAACAACTTT-TATATG-AAACTGG---------C-GACT-TTTAATGGGAACGTGTGG-----------------------------------------------------------------------------------------------------------------------------------CACAGCTCAGGTGAATTGA---------ATGCTTAA-ATGTCCCAA--------------------TTATTCAT-----------------------------------------------------------------G----------------------------------TC-----TAT-----------------ATCCACTTTGCAGGTGCCAAGTGCGCCGCTTCGTTTATGGAGCGCTGCATCATTTATATCGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........TGTAA-GCCGAA-AGGT-----------------------------------------------------T--------ATC----CACAATAAA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................TTAATGGGAACGTGTGG-----------------------------------------------------------------------------------------------------------------------------------CACAGCTCA...............................................................................................................................................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TAATGGGAACGTGTGG-----------------------------------------------------------------------------------------------------------------------------------CACAGCTCA...............................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
AT--TAACTGTAAATGGAAA-AGTT-----------------------------------------------------A---ACCAACAA----TA-AAATAA-ACGAAATT----T-TATATGAAA--TCT-G-------C-GAATTTTGAATGGGAAACCA-----------------------------------------------------------------------------------------------------------------------------------------------GGTGAATTTG---------ATTTTTAATAAGCTCAAA--------------------TGATAAAT-----------------------------------------------------------------G----------------------------------TC-----TTT----------------ATTTTCATTTACAGGTGCCAAATGCGCGGCTTCGTTTATGGAACGCTGCATCATTTACATAGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................TTAATAAGCTCAAA--------------------TGATAAAT-----------------------------------------------------------------G----------------------------------TC-----TTT----------------................................................................2811.001100000
....................................................................................CAACAA----TA-AAATAA-ACGAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
AT--TAACTGTAAATGGAAA-AGTT-----------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
AT--TAATTGTAA-GCTG------------------------------------------------------------GAAAACTGCTGC----AC-AATAAA-ATGAGAGAA--TTTTTTAC-GAAACGAG---------C-GACTTTTTAATGGGCACAA---------------------------------------------------------------------------------------------------------------------------------------------TTAGGTGAATTAATTCAT--TAAT-------TTATATT-----------------------------------------------------------------------------------TGCTAATTGCATTT--------------------------------GTA-AT----------------------TTTTATCTTGCAGGTGCCAAGTGCGCCGCTTCGTTTATGGAACGCTGCATCATCTACATTGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:41 AM