ID:

dsi_11996

 Coordinate:

3l:19444930-19445202 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

GAATCTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGTAAGGGCGTCAATGTGGCATATATTACTAGTTGAAATGCAGTGAACTTAAGGAAAAAAACAAATCCGCAACTCATGTAGCCTTTTTGCCTTATTAAGGCTTCAAAAACAAGAATCATAGTTTTCATTTATCAAATAATAATATAAATAATAAAAAATTATAATAAAATAAGTGAGTTCGTTGTTGTAATTTAGTTGTTTTATGAATTCATTTCCACTGTTACGCTTTTGAATATACATATATAATAATAATAATATAATAATTCCTTTGCAGGCCTCAGTGGCGCTGGAAAGACCTCGATTGCCTTCGAGCTGGAGGCGTAC
**************************************************.(((((((((....((((..(((((((.((.((((((((..((((......(((..........))).....))))..((((((...........))))))...(((((..........)))))))))..)))).)).))))))).(((((.....))))).(((((((((.((((((((....)).)))))).)))))))))..........))))....)))))))))...........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
......................................................................................................................................................................................................................................................GTTTTCTGAATTCATTGCCA........................................................................................................... 20 2 2 33.00 66 60 6 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGCATTCATTTCCA........................................................................................................... 20 2 7 9.29 65 56 8 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................GTTTTCTGAATTCATTTCCA........................................................................................................... 20 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TGGAAAGACCTCGATTGCCTTCGAAC........... 26 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTATGCATTCATTGCCA........................................................................................................... 20 2 3 2.33 7 5 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGTATTCATTTCCA........................................................................................................... 20 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GCTGGAAAGACCTCGATTGCCTTCGAAC........... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................CTGGAAAGACCTCGATTGCC.................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................ATTGCCTTCGAGCTGGAGGCG... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
GAATCTGGGACTCTGTCGAGGAT.............................................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................................TGGAAAGACCTCGATTGCCTTC............... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GGAAAGACCTCGATTGCCTTCGAACT.......... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GCGCTGGAAAGACCTCGATTGCCTT................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................AAGACCTCGATTGCCTTCGAACTGGA....... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TTCCTTTGCAGGCCTCAGTGACGCT.................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TGGCGCTGGAAAGACCTCGATTGCCTT................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................AATTCCTTTGCAGGCCTCAGTGGCGCT.................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TGGAAAGACCTCGATTGCCTTCGAA............ 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................ATCCGCAACTCATGGA.................................................................................................................................................................................................................................................... 16 1 2 1.00 2 0 0 0 0 0 0 0 0 2 0
...................................................................................................................................................................................................................................................................................................................................GCCTCCGTGGCGCTCGAAGGACC........................... 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................AGTTTTCTGAATTCATTTCCAC.......................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................GGAATGGATGACTGGTAAGGGC........................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TTAATTCCTTTGCAGGCCTCAGTGGCGC..................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGCATTCATTTCCAC.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GGAAAGACCTCGATTGCCTTCGAAC........... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................AGTTTTATGCATTCATTGCCA........................................................................................................... 21 3 19 0.79 15 13 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGCATTCATTGCCAC.......................................................................................................... 21 3 13 0.77 10 10 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGTATTCATTGCCA........................................................................................................... 20 3 20 0.70 14 11 2 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGAATTCATTTACA........................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTTTGAATTCATTGCCA........................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TTGTTTTCTGCATTCATTGCCA........................................................................................................... 22 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTACTAAGGCTTCCAAAACA..................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGCATTCATTGCCACT......................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTTTCTGAATTCATTGCCA........................................................................................................... 19 2 6 0.33 2 2 0 0 0 0 0 0 0 0 0
.....CGGGACTCTTTCGAGG................................................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.25 5 0 0 0 4 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................GGCGCTTGAGAGAACTCG........................ 18 3 20 0.20 4 0 0 1 2 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GCCTCGGTGGCGCTGGGA................................ 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................GTTTTCTGGATTCATTGCCA........................................................................................................... 20 3 20 0.20 4 4 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................AGTTTTCTGCATTCATTTCCAC.......................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TTTCTGAATTCATTGCCA........................................................................................................... 18 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................TACGGCTTCCAAAACATGAA................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTTTATGCATTCATTGCCA........................................................................................................... 19 2 15 0.13 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CGTTTTCTGAATTCATTGCCA........................................................................................................... 21 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
.AATACGGGACTCTTTCGAG................................................................................................................................................................................................................................................................................................................................................................. 19 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0
.................................................................................TTGACATGCAGAGAACT................................................................................................................................................................................................................................................................................... 17 2 20 0.10 2 0 0 0 1 0 1 0 0 0 0
............................................................................................TGGACTTTAGGAAAAAAAAAAA................................................................................................................................................................................................................................................................... 22 3 12 0.08 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................GTTTTCTGAATTCAGTACCA........................................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TGACCTCGATTGCCT................. 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................AAAAGAAGTGAGGTCGT.............................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................GCTTTCTGAATTCATTGCCA........................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
......GGGACTCTTTCGAGGC............................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................................................................TGACATGCAGAGAACTT.................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CTTAGACCCTGAGACAGCTCCTAAGGCTCCTACGTGCCACACCGACTGACCATTCCCGCAGTTACACCGTATATAATGATCAACTTTACGTCACTTGAATTCCTTTTTTTGTTTAGGCGTTGAGTACATCGGAAAAACGGAATAATTCCGAAGTTTTTGTTCTTAGTATCAAAAGTAAATAGTTTATTATTATATTTATTATTTTTTAATATTATTTTATTCACTCAAGCAACAACATTAAATCAACAAAATACTTAAGTAAAGGTGACAATGCGAAAACTTATATGTATATATTATTATTATTATATTATTAAGGAAACGTCCGGAGTCACCGCGACCTTTCTGGAGCTAACGGAAGCTCGACCTCCGCATG
**************************************************.(((((((((....((((..(((((((.((.((((((((..((((......(((..........))).....))))..((((((...........))))))...(((((..........)))))))))..)))).)).))))))).(((((.....))))).(((((((((.((((((((....)).)))))).)))))))))..........))))....)))))))))...........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body
..............................................................................................................................................................................................................................................................................ATGCGAAAAATTAGATGTATA.................................................................................. 21 2 2 5.00 10 10 0 0 0 0 0
..............................................................................................................................................................................................................................................................................ATGCGAAAAATTAGATGTATAT................................................................................. 22 2 2 5.00 10 10 0 0 0 0 0
..............................................................................................................................................................................................................................................................................ATGCGAAAAATTAGATGTAT................................................................................... 20 2 3 2.00 6 6 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AATGCGAAAAATTAGATGTATA.................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0
........CTGAGACAGCTCCTAAGGCTCCTACG................................................................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0
.............................................................................................................................................................................................................................................................................AAGGCGAAAAGTTAGATGTATAT................................................................................. 23 3 4 1.00 4 4 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTAGCGGAAGCTTGGCCTCCGC... 22 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................AGCTAACGGAAGCTTGACCTC...... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................................TTTTTTGTGTAGGCGTTGAGGA....................................................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................AAGTAAAGGTGACAATGCGAAAACTTATAT....................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0
......CCCTGAGACGGCTCCTAAGGCTCCT...................................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................................CAAAATACTTAAGTAAAGGTGACAAT..................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................ACGTCACTTGAAGTCCTTTTTTTGT..................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................................TTTTGGAGCCAACGGAAGGT............. 20 3 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................CATGCGAAAAATTAGATGTATA.................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GGCGAAAAGTTATATGTATAT................................................................................. 21 2 3 0.33 1 1 0 0 0 0 0
.......................AAGCTCCTACTTTCCACACCG......................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................................GAAAACGTCCAGAGTCAC......................................... 18 2 6 0.17 1 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................................................................................................CTAGCGGAAGCTTGACC........ 17 2 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................................TTATTCTTTTTTTATGTTATTTTATT........................................................................................................................................................ 26 3 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19444880-19445252 + dsi_11996 GAATCTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGTAAGGGCGTCA--------------------------------------ATGTGGCAT-------------------------------------------------------------------------------------------------------ATATTACTAGTTG-A-------------AATGCAGTGAACTTAAGGAAAAAAACAAATCCGCAACTCATGTAGCCTTTT-----TGCCTTATTAAGGCTTCAAAAA--------------------CAAGAATCATAGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTATCAAATAATAATATAAATAATAAAAAATTA---------------------------------------------------------------------------------TAATAAAATAAGTGAGTTCGTTGTTGTAATTTAGTTGTTTTATGAATTC---ATTTCCACTGTTACGCTTTTGAATATAC------ATAT----------------------------------------------------------------------------------------ATAATAATA--ATAATA--T-AA-TAATTCCTTTGCAGGCCTCAGTGGCGCTGGAAAGACCTCGATTGCCTTCGAGCTGGAGGCGTAC------
droSec2 scaffold_29:496164-496534 + GAATCTGGGACTCTGCCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGTAAGGGCGTCA--------------------------------------ATATGGTAT-------------------------------------------------------------------------------------------------------ATATTACTAGTTGGA-------------AATGCAGTGAACTTAAGGAAAAGATCAAATCCGCAACTCATGTAGAATCAT-----TGCCTTATTAAGGCTTCAAAAA--------------------CAAGAATCATAGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTATCAAATACTAATATAAATAACAAATAATTA---------------------------------------------------------------------------------TAATAAAATAAGTTAGTTCGT---TAGAATTTGGTTGTTTTATGAATTA---ATTTCCACTATTACGCTTTTGAACATTA------ATAT----------------------------------------------------------------------------------------ACATTATTA--TACATG--T-AT-TTCTTTTTTTGCAGGCCTCAGTGGCGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCGTAC------
dm3 chr3L:19851543-19851964 + GAATTTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGTAAGAAATATAG--TGC--------------------------------------------------------------------------------------------------------------------------------CTCCTGAG--------------------------------------GGCAGTAAAATTCAGGAAAAGATCA-----------------------T-----TGCCTTATTAAGGCTTCAAAAATATGTAAATATTTCTAATAACAAGAGTCATAGTTTAATTAAAG-----------------------------------------------------------------------------------------------------------------------------------------------TTTCTTTGCTCTCAAATG----------------------------TT-------------------------------TGCTTTGTAAAATACTAAGAT--------------T-----------------------CTATTATTAGATTATAAAAACCACAAAGTATAAGAACAAAGAATGATTGTTGTCCAAAATAATAAAATAAATTAG-------TTGTAATTTGGTTGTTTTATGAATTATGAAATTTCACTGTTACGCTTTTGAACATTAATATACATAT----------------------------------------------------------------------------------------ATAATAA--------------AC-TCAATCCTTTGCAGGCCTCAGTGGAGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCGTAC------
droEre2 scaffold_4784:19595854-19595915 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTTGCAGGTCTCAGTGGTGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCATAC------
droYak3 3L:20726929-20727056 - TTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTTACTCCTTAAAATATAA------ACCTTAACCACCTG--TTTT----TCTCA----------------------------------------------------------------ACAAA--ATG-----CTGGAAC-TCATTCCTTTGCAGGCCTTAGTGGTGCTGGAAAGACCTCGATTGCCTTTGAGCTGGAGGCGTAC------
droEug1 scf7180000409466:5090733-5090989 - GAATTTGGGCCTGTGCCGTGGATTCAGAGGATGCACTGTTTGGCTGACTGGTATGAGAATAAA--TTTAGC--------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGTTTCCCATTA-AATATAT------AATTAATTAAGCCG--TAAT----TCTTAGTAACTGAAATTATTATTTTTATAAAAACATTTTGAATGAAAATCATATAATCGCAAATTTATTACATA----------ACGTAATATCTTTCGTTCACAGGCCTCAGTGGCGCTGGAAAAACCTCGATCGCCTTTGAGCTTGAGGCATAT------
droBia1 scf7180000302193:5826518-5826593 - GAACCTGGGCCTGTGCCGGGGCTTCCGAGGATGCACCGTGTGGCTGACGGGTAAGAGCCAAAG--TCCAGC--------------------------------TGATAT-----------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415254:724807-725027 - GAATCTGGGCCTGTGCCGGGGCTTCCGAGGATGCACCGTGTGGCTGACTGGTAAGAGCAAAAT--TCCAGC--------------------------------TAA--------------------------------------------------------------------------------------------------------------------------------------AATGTAG----------GGAATAATTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTAATCC--C--TTTAAA----CCTTTAAAACCTTTATAAATATTTCAAAATTCTCGTCTTGATTGATAATTGATTAATTTGAATTTTAAATGTTAT--TA-----CTAGA------------------------------------------CATTGGATTTTAGGTGAAATCGTTTTTTTAA
droEle1 scf7180000491193:4122643-4122841 + TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAG---GTATTAATATCTATATTAAATAAAATCGGGAAAATATTCGAGTATATGTATGGAACTTAAGTCAGAGAT-----------------------------------------------------------------------------TTCTTATTTC---T-----------------------------------------------TTCGTA----TAATTAAAATAGTTACCCAT------------------------------------------------TACTTAACA--CCTTTA--T-GG-CCATCGCTTTGCAGGGCTGAGTGGTGCTGGAAAGACCTCGATCGCCTTCGAGCTGGAGGCCTAC------
droRho1 scf7180000773422:82005-82095 - ATAT---------------AAATTTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCATCCTTTTGCAGGCCTCAGTGGTGCTGGAAAGACCTCGATCGCCTTCGAGCTGGAGGCGTAC------
droFic1 scf7180000454113:2461101-2461572 - GAACTTGGGACTCTGCCGCGGATTCCGAGGATGCACCGTTTGGCTGACAGGTAAGGGCATAA--------------------------------------ATATCCT----------------------------------------------------------------------------------------------TACATAAATATTTATGACTTGTTGGACTTAAGCAAATTTATTGCAGTGTATTTAAATATCAGTTCA-----------------------T-----T-----ATT---------TAAATGTCCAATAAATCCTATTAAAATGGGACATAATTAAACTATTTTCTGTTGATTTATGCATCGTATTTCTTTTAGCTTTGATTTATGATAATCGGTAATTTATATGTTTTTTCTACTTATAATTGACATAAAATGTTAATATAATTTTCGCATAACTTTTTTAATATATTTTGCAAATCATTTAAAGTTTTAATGTAC-------ATTATGATTTAGATTAAAAGGATAATTTTTTGCAGTAAACATAAATGATGATTTTATTATTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTTCCATTTTTAGGCCTAAGTGGCGCAGGAAAGACCTCGATTGCCTTTGAGCTCGAGGCTTAC------
droKik1 scf7180000302391:640848-640905 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAGGACTCAGTGGCGCCGGCAAGACCTCGATTGCCTTCGAACTGGAGGCGTAT------
droAna3 scaffold_13337:19413891-19413948 - GAATCTCGGCCTGTGCCGAGGATTCCGAGGATGCACAGTTTGGCTAACTGGTAAGGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396360:608656-608714 - GAATCTGGGCCTGTGCCGGGGATTCCGAGGATGCACAGTTTGGCTAACGGGTAAGGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:5958373-5958441 + ATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----CTTTCCCCAGGTCTTAGTGGCGCTGGCAAGACCTCGATTGCCTTTGAGTTGGAGGCGTAT------
droPer2 scaffold_47:458317-458385 + ATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----CTTTCCCCAGGTCTTAGTGGCGCTGGCAAGACCTCGATTGCCTTTGAGTTGGAGGCGTAT------
droWil2 scf2_1100000004511:2744739-2744801 - AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATTCTCAGGTTTAAGCGGTGCTGGTAAAACATCGATCGCATTCGAACTGGAGGCGTAC------
droVir3 scaffold_13049:22887745-22887805 - T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTGCAGGTCTGAGTGGCGCGGGCAAGACATCGATTGCCTTTGAGCTGGAGGCGTAT------
droMoj3 scaffold_6680:17502724-17503056 - GAACTTGGGATTGTGCCGCGGCTTCAGAGGCTGCACCGTCTGGCTAACAGGTATATAGCTAAGAATATTGAAATAATTAATATCATTATAATGGATACCAAACTGATCTTTAAATAGTAAATCTGAAAAAAATCATGTTCAAAGAAATAAATAAAAGAAGATCATATGTATCTTATTCAA-------------------CAG----------ATCTTATTAA-----------------------------------------------TTTTGAATGCCAATAGTTTTTT-----TACCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCTGATTTC---ATTTA-------------------------------------------------TAGCTAATCTTA------------------------------------------------------ACTTATACGTAA----------ATGC-CA-TAATTTTGTTGTAGGTCTTAGTGGCGCTGGCAAAACGTCGATTGCCTTTGAGCTGGAAGCGTAT------
droGri2 scaffold_15110:18162081-18162448 - GAATCTGGGCCTGTGCCGCGGCTTTAGAGGCTGCACCGTCTGGCTAACAGGTAAGTAA---AT--TCCACA--------------------------------TGTCTT---------------------------------------------------------------TAATTCGAGAAAGAAAAGAATTATTGGCAGAGCGAAATAAAGAAGAAAGGTAGAATGAAATTAAATCATCG----------ACAGAAATAGATTA-----------------------GAATATG-----AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATGTACATTGAAATGAGTTGAGAAATTCTTAAGAAAAAGAGCAAATAAAACCCGAGGCTAAAAAGAAGAAA---------------------------------------------------------------TGTAATCTAA------ATAATGAACGTCTG--TTCTTTGCTAATTAAA------------------------------------------------------GTTTATTTGTTAA--TA-----ATGGAATTCTTTTCTCTTGCAGGTCTCAGTGGTGCTGGCAAAACATCGATTGCATTTGAGTTGGAGGCGTAT------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAATCTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGTAAGGGCGTCA--------------------------------------ATGTGGCAT-------------------------------------------------------------------------------------------------------ATATTACTAGTTG-A-------------AATGCAGTGAACTTAAGGAAAAAAACAAATCCGCAACTCATGTAGCCTTTT-----TGCCTTATTAAGGCTTCAAAAA--------------------CAAGAATCATAGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTATCAAATAATAATATAAATAATAAAAAATTA---------------------------------------------------------------------------------TAATAAAATAAGTGAGTTCGTTGTTGTAATTTAGTTGTTTTATGAATTC---ATTTCCACTGTTACGCTTTTGAATATAC------ATAT----------------------------------------------------------------------------------------ATAATAATA--ATAATA--T-AA-TAATTCCTTTGCAGGCCTCAGTGGCGCTGGAAAGACCTCGATTGCCTTCGAGCTGGAGGCGTAC------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAAGACCTCGATTGCC........................2011.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCTTCGAGCTGGAGGCG.........2111.00100000000001000000
GAATCTGGGACTCTGTCGAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGACCTCGATTGCCTTC.....................2211.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGGAAAGACCTCGATTGCCTT......................2511.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCTGGAAAGACCTCGATTGCCTT......................2711.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCTTTGCAGGCCTCAGTGGCGCT..........................................2711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGACCTCGATTGCCTTCGAA..................2511.00100000000100000000
droSec2
GAATCTGGGACTCTGCCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGTAAGGGCGTCA--------------------------------------ATATGGTAT-------------------------------------------------------------------------------------------------------ATATTACTAGTTGGA-------------AATGCAGTGAACTTAAGGAAAAGATCAAATCCGCAACTCATGTAGAATCAT-----TGCCTTATTAAGGCTTCAAAAA--------------------CAAGAATCATAGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTATCAAATACTAATATAAATAACAAATAATTA---------------------------------------------------------------------------------TAATAAAATAAGTTAGTTCGT---TAGAATTTGGTTGTTTTATGAATTA---ATTTCCACTATTACGCTTTTGAACATTA------ATAT----------------------------------------------------------------------------------------ACATTATTA--TACATG--T-AT-TTCTTTTTTTGCAGGCCTCAGTGGCGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCGTAC------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................GAGGATTCCGAGGATGCACGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2218.0081070
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGGAAAGACCTCGA.............................1911.0010010
dm3
GAATTTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGGTAAGAAATATAG--TGC--------------------------------------------------------------------------------------------------------------------------------CTCCTGAG--------------------------------------GGCAGTAAAATTCAGGAAAAGATCA-----------------------T-----TGCCTTATTAAGGCTTCAAAAATATGTAAATATTTCTAATAACAAGAGTCATAGTTTAATTAAAG-----------------------------------------------------------------------------------------------------------------------------------------------TTTCTTTGCTCTCAAATG----------------------------TT-------------------------------TGCTTTGTAAAATACTAAGAT--------------T-----------------------CTATTATTAGATTATAAAAACCACAAAGTATAAGAACAAAGAATGATTGTTGTCCAAAATAATAAAATAAATTAG-------TTGTAATTTGGTTGTTTTATGAATTATGAAATTTCACTGTTACGCTTTTGAACATTAATATACATAT----------------------------------------------------------------------------------------ATAATAA--------------AC-TCAATCCTTTGCAGGCCTCAGTGGAGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCGTAC------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................CGAGGATGCACGGTGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....TGGGACTCTGTCGAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCTTCGAACTGGAGGCGT........2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCACGGTGTGGCTGACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGCTGGAAAGACCTCGAT............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGAGCTGGAAAGACCTCGATTG..........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGGATGCACGGTGTGGCTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTCCGAGGATGCACGGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATGCACGGTGTGGCTGACTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.................GAGGATTCCGAGGATGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....TTGGGACTCTGTCGAGGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGAAAGACCTCGATC...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
......................TTCCGAGGATGCACGGTGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAAAGACCTCGATTGCCTT......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTTCGAACTGGAGGCGTAC------2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAAAGACCTCGATTGCC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCCGAGGATGCACGGTGTGGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGAGGATGCACGGTGTGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCTCGATTGCCTTCGAA..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................TCCGAGGATGCACGGTGTGGCTGACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................CGAGGATGCACGGTGTGGCTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAGTGGAGCTGGAAAGAC..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTTGGGACTCTGTCGAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGAGGATGCACGGTGTGGCTGACTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCAGTGGAGCTGGA.......................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGATTCCGAGGATGCACGGTGTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............TGTCGAGGATTCCGAGGATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGGATGCACGGTGTGGCTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGGAAAGACCTCGATTGCCTTC.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................GAGGATTCCGAGGATGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
droEre2
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTTGCAGGTCTCAGTGGTGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCATAC------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAAGACCTCGATTGCC........................2011.0010000100
droYak3
TTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTTACTCCTTAAAATATAA------ACCTTAACCACCTG--TTTT----TCTCA----------------------------------------------------------------ACAAA--ATG-----CTGGAAC-TCATTCCTTTGCAGGCCTTAGTGGTGCTGGAAAGACCTCGATTGCCTTTGAGCTGGAGGCGTAC------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGAAAGACCTCGATTGCCTTC.....................2712.00201000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGGTGCTGGAAAGACCT................................2211.00100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGGAAAGACCTCGATTGCCT.......................2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGGTGCTGGAAAGACCTC...............................2311.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGGTGCTGGAAAGACCT................................2011.00100000010000
droEug1
GAATTTGGGCCTGTGCCGTGGATTCAGAGGATGCACTGTTTGGCTGACTGGTATGAGAATAAA--TTTAGC--------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGTTTCCCATTA-AATATAT------AATTAATTAAGCCG--TAAT----TCTTAGTAACTGAAATTATTATTTTTATAAAAACATTTTGAATGAAAATCATATAATCGCAAATTTATTACATA----------ACGTAATATCTTTCGTTCACAGGCCTCAGTGGCGCTGGAAAAACCTCGATCGCCTTTGAGCTTGAGGCATAT------SizeHit CountTotal NormTotal
No Reads
droBia1
GAACCTGGGCCTGTGCCGGGGCTTCCGAGGATGCACCGTGTGGCTGACGGGTAAGAGCCAAAG--TCCAGC--------------------------------TGATAT-----------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAATCTGGGCCTGTGCCGGGGCTTCCGAGGATGCACCGTGTGGCTGACTGGTAAGAGCAAAAT--TCCAGC--------------------------------TAA--------------------------------------------------------------------------------------------------------------------------------------AATGTAG----------GGAATAATTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTAATCC--C--TTTAAA----CCTTTAAAACCTTTATAAATATTTCAAAATTCTCGTCTTGATTGATAATTGATTAATTTGAATTTTAAATGTTAT--TA-----CTAGA------------------------------------------CATTGGATTTTAGGTGAAATCGTTTTTTTAASizeHit CountTotal NormTotal
No Reads
droEle1
TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAG---GTATTAATATCTATATTAAATAAAATCGGGAAAATATTCGAGTATATGTATGGAACTTAAGTCAGAGAT-----------------------------------------------------------------------------TTCTTATTTC---T-----------------------------------------------TTCGTA----TAATTAAAATAGTTACCCAT------------------------------------------------TACTTAACA--CCTTTA--T-GG-CCATCGCTTTGCAGGGCTGAGTGGTGCTGGAAAGACCTCGATCGCCTTCGAGCTGGAGGCCTAC------SizeHit CountTotal NormTotal
No Reads
droRho1
ATAT---------------AAATTTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATACATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCATCCTTTTGCAGGCCTCAGTGGTGCTGGAAAGACCTCGATCGCCTTCGAGCTGGAGGCGTAC------SizeHit CountTotal NormTotal
No Reads
droFic1
GAACTTGGGACTCTGCCGCGGATTCCGAGGATGCACCGTTTGGCTGACAGGTAAGGGCATAA--------------------------------------ATATCCT----------------------------------------------------------------------------------------------TACATAAATATTTATGACTTGTTGGACTTAAGCAAATTTATTGCAGTGTATTTAAATATCAGTTCA-----------------------T-----T-----ATT---------TAAATGTCCAATAAATCCTATTAAAATGGGACATAATTAAACTATTTTCTGTTGATTTATGCATCGTATTTCTTTTAGCTTTGATTTATGATAATCGGTAATTTATATGTTTTTTCTACTTATAATTGACATAAAATGTTAATATAATTTTCGCATAACTTTTTTAATATATTTTGCAAATCATTTAAAGTTTTAATGTAC-------ATTATGATTTAGATTAAAAGGATAATTTTTTGCAGTAAACATAAATGATGATTTTATTATTCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTTTCCATTTTTAGGCCTAAGTGGCGCAGGAAAGACCTCGATTGCCTTTGAGCTCGAGGCTTAC------SizeHit CountTotal NormTotal
No Reads
droKik1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAAGGACTCAGTGGCGCCGGCAAGACCTCGATTGCCTTCGAACTGGAGGCGTAT------SizeHit CountTotal NormTotal
No Reads
droAna3
GAATCTCGGCCTGTGCCGAGGATTCCGAGGATGCACAGTTTGGCTAACTGGTAAGGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................GAGGATTCCGAGGATGCACAGTTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...............................TGCACAGTTTGGCTAACTGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........................CCGAGGATGCACAGTTTGGCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droBip1
GAATCTGGGCCTGTGCCGGGGATTCCGAGGATGCACAGTTTGGCTAACGGGTAAGGATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----CTTTCCCCAGGTCTTAGTGGCGCTGGCAAGACCTCGATTGCCTTTGAGTTGGAGGCGTAT------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAGTGGCGCTGGCAA.....................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTCGATTGCCTTTGAGTTG...............2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTCGATTGCCTTTGAGTTGGA.............2411.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGGCGCTGGCAAGAC..................................2011.0010000001000
droPer2
ATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----CTTTCCCCAGGTCTTAGTGGCGCTGGCAAGACCTCGATTGCCTTTGAGTTGGAGGCGTAT------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTGGCGCTGGCAAGACCTC...............................2311.001100000
droWil2
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATTCTCAGGTTTAAGCGGTGCTGGTAAAACATCGATCGCATTCGAACTGGAGGCGTAC------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCGGTGCTGGTAAAACATC...............................2312.00220000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGCGGTGCTGGTAAAAC..................................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACATCGATCGCATTCGAACTGG..............2611.00101000
droVir3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTGCAGGTCTGAGTGGCGCGGGCAAGACATCGATTGCCTTTGAGCTGGAGGCGTAT------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACATCGATTGCCTTTGAGCTG...............2412.002000002000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGCCTTTGAGCTGGAGGCGT........2411.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
GAACTTGGGATTGTGCCGCGGCTTCAGAGGCTGCACCGTCTGGCTAACAGGTATATAGCTAAGAATATTGAAATAATTAATATCATTATAATGGATACCAAACTGATCTTTAAATAGTAAATCTGAAAAAAATCATGTTCAAAGAAATAAATAAAAGAAGATCATATGTATCTTATTCAA-------------------CAG----------ATCTTATTAA-----------------------------------------------TTTTGAATGCCAATAGTTTTTT-----TACCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCTGATTTC---ATTTA-------------------------------------------------TAGCTAATCTTA------------------------------------------------------ACTTATACGTAA----------ATGC-CA-TAATTTTGTTGTAGGTCTTAGTGGCGCTGGCAAAACGTCGATTGCCTTTGAGCTGGAAGCGTAT------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GAATCTGGGCCTGTGCCGCGGCTTTAGAGGCTGCACCGTCTGGCTAACAGGTAAGTAA---AT--TCCACA--------------------------------TGTCTT---------------------------------------------------------------TAATTCGAGAAAGAAAAGAATTATTGGCAGAGCGAAATAAAGAAGAAAGGTAGAATGAAATTAAATCATCG----------ACAGAAATAGATTA-----------------------GAATATG-----AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGATGTACATTGAAATGAGTTGAGAAATTCTTAAGAAAAAGAGCAAATAAAACCCGAGGCTAAAAAGAAGAAA---------------------------------------------------------------TGTAATCTAA------ATAATGAACGTCTG--TTCTTTGCTAATTAAA------------------------------------------------------GTTTATTTGTTAA--TA-----ATGGAATTCTTTTCTCTTGCAGGTCTCAGTGGTGCTGGCAAAACATCGATTGCATTTGAGTTGGAGGCGTAT------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:20 PM