ID:

dsi_11986

 Coordinate:

3l:16376323-16376384 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_16376177_16376322_-]; CDS [3l_16376177_16376322_-]; CDS [3l_16376385_16376743_-]; exon [3l_16376385_16376743_-]; intron [3l_16376323_16376384_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------##################################################
AGCTGGTGTCCGAAGTGGGCGTTGGTGTCGTCGCTTCCGGTGTTGCCAAGGTAGGTTTGGGAATGCATTAGAAAGGTAATAAGTCTCTTGAAGAATTTTCTTATTACAACAGGGCAAAGCCGAGCACATTGTAATCTCTGGACATGATGGTGGTACCGGAGC
**************************************************.........................((((((((................)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................ATTGTAATCTCTGGACATGAT.............. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AATCTCTGGACATGATGGTGGTACCGG... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCACATTGTAATCTCTGGACATGATG............. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CACATTGTAATCTCTGGACATGATG............. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................CCGTGGACATTGTAATCT......................... 18 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................CACATTGTAATCTCTGGACAT................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCACATTGTAATCTCTGGACA.................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................AAAGCCGAGCACATTGTAATCTCTGGA.................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................GTTGGTGTCGTCGCTTCCGGTGT....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCACATTGTAATCTCTGGACAT................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................TTGGTGTCGTCGCTTCCGGTGTTGC.................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................GTCGCTTCCGGTGTTGCCAAGGGC............................................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................CACATTGTAATCTCTGGACATGATGGT........... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................TAATCTCTGGACATGATGGTGGTA....... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................ATCTCTGGACATGATGGTGGTACCGG... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................CGTCGCTTCCGGTGTTGCCAAGGGC............................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................CTTCCGGTGTTGCCAAGGGC............................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACATTGTAATCTCTGGACATGATGGT........... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTGTAATCTCTGGACATGATGGG........... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACATTGTAATCTCTGGACATG................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......GTCCGAAGTGGGCGTTGGTGTCGTC.................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......GTCCGAAGTGGGCGTTGGTGTC..................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................CGAGCACATTGTAATCTCTGGACATG................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................TTGTAATCTCTGGACATGATGGTGGTACC..... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCACATTGTAATCTCTGGACATGATGG............ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................GAATCTCTGGACATGATGGTGGTA....... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................ATTGTAATCTCTGGACATGATG............. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...TGGTGTCCGAAGTGGGCGTTGGT........................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................ACATTGTAATCTCTGGACATGAT.............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTCTGGACATGATGGTGGTACCGG... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TGGACATGATGGTGGTACCGGAGC 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................GGTGTCGTCGCTTCCGGT......................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................ATGATGATGGAACCGGAGC 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................ATAATGATGGTACCGGA.. 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................CATGATAATCGCTGGACATG................ 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................ATAAGTGTCTTGAAGGA................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................GAGGACATTGTAATC.......................... 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................CATGATGGCGGTACGGG... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................ATTTTCATATCAAAACAGGG................................................ 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................TGGGAATGCGCTAGAAA........................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TCGACCACAGGCTTCACCCGCAACCACAGCAGCGAAGGCCACAACGGTTCCATCCAAACCCTTACGTAATCTTTCCATTATTCAGAGAACTTCTTAAAAGAATAATGTTGTCCCGTTTCGGCTCGTGTAACATTAGAGACCTGTACTACCACCATGGCCTCG
**************************************************.........................((((((((................)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 M023
head
 GSM343915
embryo
 M025
embryo
 M024
male body
...ACCACAGTCTTCACCC............................................................................................................................................... 16 1 2 112.00 224 86 97 29 6 4 0 2 0 0 0 0
...ACCACAGTCTTCACCCT.............................................................................................................................................. 17 2 19 21.37 406 169 103 108 11 13 0 2 0 0 0 0
...ACCACAGTCTTCACC................................................................................................................................................ 15 1 9 18.33 165 79 47 25 12 2 0 0 0 0 0 0
...ACCACAGTCTTCACCCTAAAC.......................................................................................................................................... 21 3 10 2.90 29 22 0 0 0 1 3 0 3 0 0 0
....CCACAGTCTTCACCC............................................................................................................................................... 15 1 11 1.82 20 10 3 7 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCTAAA........................................................................................................................................... 20 3 14 1.21 17 14 0 0 2 0 1 0 0 0 0 0
.GGACCACAGTCTTCACCC............................................................................................................................................... 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCTCA............................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
TGGACCACAGTCTTCACCC............................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCGA............................................................................................................................................. 18 2 3 0.67 2 0 1 0 0 0 1 0 0 0 0 0
TGGACCACAGTCTTCACC................................................................................................................................................ 18 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCTC............................................................................................................................................. 18 2 5 0.60 3 0 1 0 0 0 1 1 0 0 0 0
...ACCACAGTCTTCACCCTCAGC.......................................................................................................................................... 21 3 8 0.38 3 0 0 0 0 0 3 0 0 0 0 0
.................................GAAGGCCACAAGGGTT................................................................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCGT............................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCGCACCT......................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
TCGACCACAGTCTTCACCCTA............................................................................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..AACCACAGTCTTCACCCG.............................................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCTG............................................................................................................................................. 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 2 1
...................................AGGCCACAAAGGTTC................................................................................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...ACCACAGGCTTCACCCTAAG........................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0
.CTACCACAGTCTTCACCCT.............................................................................................................................................. 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCC.............................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...ACCACAGTCTTCACCCTGA............................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...ACCACAGTCTTCACCCCAA............................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 04:29 AM