ID:

dsi_11934

Coordinate:

3r:4211899-4211954 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4211896_4211898_+]; five_prime_UTR [3r_4211772_4211895_+]; exon [3r_4211772_4211898_+]; exon [3r_4211955_4212104_+]; CDS [3r_4211955_4212104_+]; intron [3r_4211899_4211954_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------################################################## AAAAAGTTGTAAATAAGCAGGAAACGGTCTAACCAATTTCCCGAAAAATGGTAAGCAACTAGCCAGCTATAAGCTTAGACCCCTATTTGACCCTCCATTTGCCCAGATACGATTCATACTTATACAAAACCGAGCTGGAAAAACTCGCCTGGCCAA ************************************************.(((((...(((....)))...))))).............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR902008 ovaries
.......................................................................................................................TTATACAAAACCGAGCTGGAAAAACT...........	26	0	1	2.00	2	0	0	0	0	1	1	0	0	0
........................................................................................................................TATACAAAACCGAGCTGGAAAAACTC..........	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
....................................................................................................................TACTTATACAAAACCGAGCTGGAAAAACT...........	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................................................................................CAAAACCGAGCTGGAAAAACT...........	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..............................................................................................................................AAACCGAGCTGGAAGGACTC..........	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0
.............TAAGCAGGAAACGGTCTAA............................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	1	0	0
................................................TGGGAAGCAACTAGC.............................................................................................	15	1	2	0.50	1	0	0	0	0	0	0	0	1	0
........GTGCATAAGTAGGAAACGG.................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1
.......................................CCCGAAAGATGGTAAC.....................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0	0

Anti-sense strand reads

TTTTTCAACATTTATTCGTCCTTTGCCAGATTGGTTAAAGGGCTTTTTACCATTCGTTGATCGGTCGATATTCGAATCTGGGGATAAACTGGGAGGTAAACGGGTCTATGCTAAGTATGAATATGTTTTGGCTCGACCTTTTTGAGCGGACCGGTT ************************************************.(((((...(((....)))...))))).............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M023 head	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs
.........................................................................................................CTATGCTAAGTATGAATATGTT.............................	22	0	1	1.00	1	0	0	1	0	0	0	0
.........................CCAGAATTGTTAAAGGGCT................................................................................................................	19	2	1	1.00	1	0	1	0	0	0	0	0
..........................CAGATTGGTTAAAGGGCTTTT.............................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................ATGCTAAGTATGAATATGTTT............................	21	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................ATGGGTCGATGTTCGAA................................................................................	17	2	20	0.65	13	0	0	0	13	0	0	0
.........................................................................................................................TATGTTTTCGCTAGACCT.................	18	2	4	0.50	2	0	0	0	0	2	0	0
..........................CAGAATTGTTAAAGGGCT................................................................................................................	18	2	3	0.33	1	0	1	0	0	0	0	0
...................CCATTGCCAGAATTGTTAA......................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	2	0
.................................................................................................................AGTATGAAAATAATTTGGCT.......................	20	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/23/2015 at 11:13 PM