ID:

dsi_11924

 Coordinate:

x:3395674-3395823 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.9 -2.7 -2.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
P_DGDNAP+
DNAREP1_DYakRCHelitron+

Sense Strand Reads

GACATGATAGTTGCCGAGCACGTTATCGTCGAGGATACTTCGTCCAAGGCGTAAGTGTTGCAGAAATAAAACAATATGACAGTGTCAACTGCTAAATTCTATATTTCCTAATTCTTTTGAAACATTTATTTATACCCGTTGCTCGTAGAGGAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAAAAGCGTATCAAATATATATATATTTTGTTGATCATGATCAATTTTTAAATTTGTTCT
**********************************************************************************************************************************************.(((............((((((...(((...))).))))))............)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 M025
embryo
 GSM343915
embryo
..............................................................................................................................................................................AAAAGTATGTAACAGGCAAAAGCGTA.................................................. 26 0 1 7.00 7 5 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AGGGTATACTAGATTCGTTGAAAAGTA..................................................................... 27 0 20 4.90 98 4 52 42 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATGTAACAGGCAAAAGCGT................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATGTAACAGGCAAAAGCGTATCAAA............................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAA......................................................... 26 0 12 1.67 20 1 0 0 3 3 10 0 2 0 1 0 0
.........................................................................................................................................................AAGGGTATACTAGATTCGTTGAAAAG....................................................................... 26 0 20 1.60 32 0 16 16 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCGTAGAGGAAAAGGGTATACTAGA................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TATATATATTTTGTTGATCATGATCAA................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAGGCAAAAGCGTATCAAATA........................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GAAAAGTATGTAACAGGCAA......................................................... 20 0 20 1.00 20 0 0 0 0 0 0 20 0 0 0 0 0
.............................................................................................................................................................................................................TATATATATATTTTGTTGATCATGAT................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GAAAAGGGTATACTAGATTCGTTGAAAAG....................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGAGGAAAAGGGTATACTAGA................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAGTATGTAACAGACAAAAGCGTA.................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCGTTGAAAAGTATGTAACAGGCA.......................................................... 24 0 20 0.85 17 0 0 2 0 4 11 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCA.......................................................... 25 0 20 0.50 10 2 8 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGGTATACTAGATTCGTTGAAAAG....................................................................... 24 0 20 0.50 10 0 0 0 10 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCGTTGAAAAGTATGTAACAGGC........................................................... 23 0 20 0.45 9 0 7 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA.......................................................................... 24 0 20 0.40 8 0 0 8 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAAA........................................................ 27 0 10 0.40 4 0 1 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGG............................................................ 23 0 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAAAGGGTATACTAGATTCGT.............................................................................. 21 0 20 0.40 8 8 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAATAGGC........................................................... 24 1 20 0.35 7 1 0 6 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAGCAGGCAA......................................................... 26 1 15 0.33 5 0 0 0 1 2 2 0 0 0 0 0 0
.................GCCCGTTATCGTCGAG......................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAA......................................................................... 25 0 20 0.30 6 0 6 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAAA......................................................................... 26 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAAAAG...................................................... 29 0 10 0.20 2 0 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAGCAGGCTA......................................................... 26 2 20 0.20 4 0 0 0 0 1 3 0 0 0 0 0 0
.........................................GTCAAAGGCGTAAGT.................................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGAATGTAACAGGCAA......................................................... 26 1 15 0.20 3 0 0 0 1 0 2 0 0 0 0 0 0
........................................................................................................................................................................TCGTTGAAAAGTATGTAGCAGGCAA......................................................... 25 1 15 0.20 3 0 0 0 0 0 3 0 0 0 0 0 0
..............................................................................................................................................................TATACTAGATTCGTTGAAAAG....................................................................... 21 0 20 0.20 4 0 2 0 0 0 0 0 0 1 0 1 0
.......................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAAAAG....................................................................... 28 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCGTTGAAAAGTATGTAACAGGCAA......................................................... 25 0 12 0.17 2 0 0 0 0 1 1 0 0 0 0 0 0
......................................................................................................................................................GAAAAGGGTATACGAGATTCGTTGAAA......................................................................... 27 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAAA........................................................................ 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCTA......................................................... 26 1 20 0.15 3 0 0 0 0 0 1 0 2 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCC.......................................................... 25 1 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACTGGCAA......................................................... 26 1 14 0.14 2 0 0 0 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................TCGTTGAAAAGAATGTAACAGGCAA......................................................... 25 1 15 0.13 2 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTAGGAAACAGGCAA......................................................... 26 2 18 0.11 2 0 0 0 0 1 1 0 0 0 0 0 0
................................................................................................................................................................TACTAGATTCGTTGAAAAGTA..................................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAAAA....................................................... 28 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAG............................................................. 22 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
......................................TTCGTCCAAGGCTAAA.................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAA.......................................................................... 25 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAATAGGCTA......................................................... 26 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................................................AGGGTATACTAGATTCGTTGAAAA........................................................................ 24 0 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0 0
................................................................................................................................................................TACTAGATTCGTTGAAAAGT...................................................................... 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATTCGTTGAAAAGTATGTAACAGGCAA......................................................... 27 0 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................ATATATTTTGTTGAT......................... 15 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCGGTGAAAAGTATGTAACAGGCAA......................................................... 25 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................CTCGTTGAAACGTATGTAACAGGCAAA........................................................ 27 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGAAAA........................................................ 27 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACATGCAA......................................................... 26 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TGAAAAGTATGTAACAGGCAA......................................................... 21 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAGTATGTAACAGGCAAAAG...................................................... 22 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATGTAACAGGCAAAAG...................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GGTATACTAGATTCGTTGAAAAGT...................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TATACTAGATTCGTTGAAAAGTATG................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAGTATGTAACAGG............................................................ 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAGGGGATACTAGATTCGTTGAAAAG....................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAGTATGTAACACGCAAA........................................................ 20 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................GATTCGTTGAAAAGTATGTAACAGGC........................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATTCGTTGAAAAGTATGTAACAGGC........................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGC........................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................TACAAGATTCTTTGAAAAGTATGTAACAGGC........................................................... 31 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAAGGGTATACTAGATTCGTTGAAAAGT...................................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAGTATGTAACAGGCAAAA....................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGAATGTAACAGGCTA......................................................... 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................ATTCGTTGAAAAGTATGTAACAGG............................................................ 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTTGAAAAGTATGTAACA.............................................................. 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGAAAAGGGTATACTAGATTCGT.............................................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCGTTGAAAAGTATGTAACAGG............................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGTTGAAAAGTATGTAACCGGCTA......................................................... 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................AGATTCGTTGAAAAGTATGTAACAGGC........................................................... 27 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................GTATACTAGATTCGTTGAAAAGTA..................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACTAGATTCGTTGAAAAG....................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................AGGGTATACTAGATTCGTTGAAAAG....................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................ATACTAGATTCGTTGAAAAGTAT.................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................AAAAGGGTATACTAGATT................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAGGGTATACTAGATTCGTTGAAAA........................................................................ 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TACTAGATTCGTTGAAAAGTATGTAAC............................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAAGGGTATACTAGATTCGTTGA........................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTGTACTATCAACGGCTCGTGCAATAGCAGCTCCTATGAAGCAGGTTCCGCATTCACAACGTCTTTATTTTGTTATACTGTCACAGTTGACGATTTAAGATATAAAGGATTAAGAAAACTTTGTAAATAAATATGGGCAACGAGCATCTCCTTTTCCCATATGATCTAAGCAACTTTTCATACATTGTCCGTTTTCGCATAGTTTATATATATATAAAACAACTAGTACTAGTTAAAAATTTAAACAAGA
**************************************************.(((............((((((...(((...))).))))))............)))..********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR902008
ovaries
 GSM343915
embryo
..............................................................................................TTAAGATATAAAGGATTAAGAAAACT.................................................................................................................................. 26 0 1 3.00 3 1 1 0 0 1 0 0 0 0 0
..............................................TCCGCATTCACAACGTCTTTATTT.................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................GGTTCCGCATTCACAACGTCTTTATT..................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................TCACAACGTCTTTATTTTGTTAT.............................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AGCAACTTTTCATACATTGTCCGT.......................................................... 24 0 20 1.80 36 0 0 0 36 0 0 0 0 0 0
.....................................................................................................................................................................CTAAGCAACTTTTCATACATTGTCCGT.......................................................... 27 0 20 1.65 33 0 0 11 22 0 0 0 0 0 0
.....................................................................TTGTTATACTGTCACAGTTGACGATT........................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................GAAGCAGGTTCCGCATTCACAACGT............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................TGACGATTTAAGATATAAAGGATT........................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................GAAGCAGGTTCCGCATTCACAACGTCT.......................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................TCACAACGTCTTTATTTTGTTATACTGT......................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............CGGCTCGTGCAATAGCAGCTCCTAT..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................AGCAGGTTCCGCATTCACAACGTCTTT........................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GGTCCGTTTTCGCATAGTTTATATAT....................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTTTTCCCATATGATCTAAGCAACTTT......................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................TCGTGCAATAGCAGCTCCT....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................ACAGTTGACGATTTAAGATATAAAGGAT............................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........CAGCGGCTCGTGCAATAGCAGCTCCT....................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TGTAAATAAATATGGGCAACGAGCAT....................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................AAGCAGGTTCCGCAT..................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTTTCCCATATGATCTAAGCAACTTT......................................................................... 26 0 20 0.60 12 0 0 9 0 0 0 0 3 0 0
.................................................ACATTCACTACGACTTTATTTTGT................................................................................................................................................................................. 24 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TTCCCATATGATCTAAGCAACTTT......................................................................... 24 0 20 0.40 8 0 0 0 0 6 0 0 2 0 0
.........................................................................................................................................................................GCAACTTTTCATACATTGTCCGT.......................................................... 23 0 20 0.35 7 0 0 2 5 0 0 0 0 0 0
........................................................................................................ATGGATTAAGAAAACGTTG............................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AACTAGTACAAGTCACAAATTTA....... 23 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................ATAAAGGATTAAGACAA.................................................................................................................................... 17 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TATGATCTAAGCAACTTTTCATACA.................................................................. 25 0 20 0.25 5 0 3 0 0 0 0 0 0 2 0
................................................................................................................................................................ATGATCTAAGCAACTTT......................................................................... 17 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AAGCAACTTTCTATACATTGTCCGTT......................................................... 26 2 18 0.17 3 0 0 0 0 0 3 0 0 0 0
.......................................................................................................................................................................AAGCAACTTTTCATACATTGTCCGTT......................................................... 26 0 12 0.17 2 0 0 0 0 0 2 0 0 0 0
................................................................................................................................................................ATGATCTAAGCAACTTTTCATACA.................................................................. 24 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0
....................................................................................................................................................................TCTAAGCAACTTTTCATACATTGTCCGTT......................................................... 29 0 9 0.11 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................TGATCTAAGCAACTTTTCATACATTGTC............................................................. 28 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AAGCAACTTTCCATACATTGTCCGTT......................................................... 26 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0
................................CATATTAAGCAGGTTCCAC....................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................CAGCAACTTTTCATACATTGTCCGT.......................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................ACCTCCTTTTCCCATATTA...................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................AGCAACTTTCTATACATTGTCCGTTT........................................................ 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................TCTAAGCAACTTTTCATACATTGTCCGT.......................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................TGATCTAAGCAACTTTTCAT..................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................ATGATCTAAGCAACTTTTCATACATTGT.............................................................. 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................CTAAGCAACTTTTCATACATTATCCGT.......................................................... 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TCATACATTGTCCGTTT........................................................ 17 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TCATACATTGTCCGTT......................................................... 16 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................TTCCCATATGATCTAAGCAACTTTT........................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................GGATGAAGAAAACGTTG............................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:3395624-3395873 + dsi_11924 GACAT-GATAGTTGCCGAGCACGTTATCGTCGAGGATACTTCGTCCAAGGCGTAAGTGTT--------------------------------------------GCAGAA-ATAA------------------A-ACAATATG------------------------------ACAGT-GTCAACTGCTAAATTC---------------------TATAT--T--TCC--------TAATTCTTTTGAAAC-----------------------------------------------------AT-----------TTATTTATACCCGTTG-------CTCG-TAGAGGAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAAAAG--------------CGTATCAAATATATATATATTTTGTTGATCATGATCAATTTTTAAATT-TGTTCT
droSec2 scaffold_1119:5037-5286 + GACAT-GATAGTTGCCGAGCACGTTGTCGTCGAGGATACTTCGTCCAAGGCGTAAGTGTT--------------------------------------------GCAGAA-ATAA------------------A-ACAATATG------------------------------ACAGT-GTAAACTGCTAAATTC---------------------TATAT--T--TCC--------TAATTCTTTTGAAAC-----------------------------------------------------AT-----------CTATTTATATCCGTTG-------CTCA-TAGAGGAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAAAAG--------------CGTATAAAATATATATATATTTTGTTGATCATGATCAATTTTTAAATT-TTTTCT
dm3 chrX:3688640-3688862 + GACAT-GATAGTTGCCGAGCACGTTGTCGTCGAGGATACTTCGTCCAAGGCGTAAGTGTT--------------------------------------------GCAGAA-ATAA------------------A-ACAATATG------------------------------ACAGT-GTCAACGGTTAAATTC---------------------TATAT--T--TCC--------TAATTTATTTGAAAC-----------------------------------------------------AT-----------CTATTTATTCCCGTTA-------CTCA-TAGAGGAAAAGGGTATACTAGATTCGTTGAA-------GT------------------------------------------ATATATAAAATTTGTTGATCAGGATCAATTTTTAAATTTTTTTCT
droEre2 scaffold_4845:3638234-3638467 + ACG----ATCATTGCCCTGACCACTATCACATTGGATACCACGTAAGGAACCCACA-GAT----GTGGTTATCAGAAC-ATATCTTTATAGTTTCAACTT----GC------TTC------------------A-GA-----------------------------------------------------------------------------A-TCC--------------------------------------------------------------------------------------ATTTCCACTCGA-ATTTGTATGCCCTTTA-------CTCG-TGGGCTAACAGGGTATGCTAGATTCGTTGAA-------AAGTATGTAACAGGTAGAAGTAACCGTTTTCAGCCGTATAAAGTATATATA----TTCTTGATCAGGATCCAT----------------
droYak3 3L:24084630-24084847 - AACAA-GA--------GAAAACGCTATAGTCGAGTTTCC--CGACTGTCAAATAATCGTT--------------------------------------------GCCGTT-ATTC------------------A-GCA-TGTG------------------------------GAAGT-GCGAACACGAAATTTT------------------CAC-----ATTTT---------CA------------GT---------------------------------------------------------------------CATTATGCCCGTTA-------CTTG-TAGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCATAAGGAAGCGTTTCCGACCATATAAAGTATATATA----TTCTTGATCAGGATCAAT----------------
droEug1 scf7180000405696:5151-5410 + GTCACTGTCAGTTACACAACATGCTTTCTCTGACAATAGGTGGCGCCTTGTGAATTTATA--------------------------------------------ATAG------------------------------------------G---------------AAAATGAATATT-ATAA--------------------------------------------------------A--------------ATTGTGTTAAACAGTAACGGGTATCTTATAGTCGCTACACTCGTTTATAGCGTTTC------CTCTTGTTATACCCGGTA-------CACG-TAGAGTAAAAGGGTATACTAGATTCGTTAAA-------AAGTATGTAACAGATACAAGGAAGCGTTTCCGACCCTATAAAGTATATATA----TTCTTGATCAGGATCAAT----------------
droBia1 scf7180000299447:35417-35606 + AAA-----------------------------------------------------TGTT--------------------------------------------AAAGAA-TTTC------------------A-TAAACA-------------------------------CACAGT-GTAAATTAGTGCTTTT------------------TG-TTTAT--T--TGTAAGTTTCA----------GTGAT-----------------------------------------------------A-----------TATTTTTATACCCGTTA-------CTCG-TAGAGTAAAAGGGTATACTAGATTCGTCGGA-------AAGTATTTACGAGGCAGAAGGAAGCGTTTCCGACCCCATAATGTATATATA----TTCTTGATCAGGATCA------------------
droTak1 scf7180000415491:165860-166114 - GATGT-GATAGTTTGCG-------------------------GAGTGTTAACGAGGA-------------------------------------------AGCTCCGGGT-GTTTAGGGGAGCTACAAAAAAAAAA-AATATGTAAAATCA---------------ACA---TACAAA-AAAAAATA----GTTCACTATTTTCTGAATTTTTCA-TGCAT--T--TTG--------------------------------------------------------------------------TTGTTTT------A-TTTTTTATACCCGTTA-------CTCG-TAGAGTAAAAGGGTATATTGTATTCGTGCAA-------AAGTATGTAACAGGGAGAAGGAAGCGTTTTCGACCCTA-AAAGTATATATA----TTCTTGATCAGGGTCA------------------
droEle1 scf7180000491107:37570-37757 + TTGG--------------------------CAAGGAAACTTCAC----------ATTCTT--------------------------------------------GCATAT-AAAT------------------A-ACAAT-TTACATTACC---------------ATTT------------------TAAAACC---------------------CATA------------------AA-----------------------------------------------------------------------------TTTTCTTTGAACTTTTA-------CTCG-AAGAGTAAAAGGGTATATTGTGATCGTTGAA-------TAGTATGTAACAGGTAGAAGGATACGATTCCGTCCCTATAAAGTATATATA----TTCCTGATCAGGATCAAT----------------
droRho1 scf7180000760261:4123-4327 + TTA-----------------------TTGTCGAAGACATTATG---AAAACATAATT------------------------------------------------------------------------------------------------------TCTTGTAGTAATACAAAGT-TTAAAT------------------------------------ATTTT---------CC------------GT-TAATTTTTTTAATTTTTAA------------------------------------TTG--------ATATTTATACCCGTTA-------CTCG-TAGAGTAAAAGGGTATATTGTATTCGTGAAA-------AAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATA----TTCTTGATCAGGATCA------------------
droFic1 scf7180000453948:2697318-2697456 + TTCCT-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACTTTAAAAC-----------------------------------------------------ATATT--------ACTTGTA-AACCGTTA-------CTTG-TAGAGTAAAAGGGTATACTGCATTTGTTGAA-------AAGAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATAGAGAATTTATA----TTTTTGATCAGAATCA------------------
droKik1 scf7180000302414:311182-311330 - GATAT-GATTGTCGCCGAGCATGTGGTCGTCGAGGATACAACGTCCAAGGCGTGAGTACAGATGAAAATTACTAGAAGG---------------------AGCTACTGA------------------------------------------------------------------GGT-GGCATCTCTTAATGTT---------------------TATTT--A--TTT--------TATTTTA-----------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------TTTGCTGGT---------TTTTTAAACCATTAATT
droAna3 scaffold_12929:256444-256584 + GACAT-GATCGTGGCCGAGCACGTTGTGGTTGAGGATACCACCTCCAAGGCGTAAGTACTAGTTCTT-------------------------------------AATCTT-AAA-------------------AAA-AATTTTTAATATAA---------------ATTT---TAAAGCTAAAAGTA----GT----TGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGATTTTTTTAAATATTTCTT-------------------------------------T
droBip1 scf7180000392265:24268-24413 - TAAAT-TTTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------TTCATTCAAAAC-----------------------------------------------------ATTTC--------ATTTTTATACCCGGTA-------CTCG-AAGAGTACAAGGGTATATTGTAATCGTATGA-------ATGTACGTAACATAGAGA------------CAACATAATAACATATATATA----TTCTTGATCACCATCAATAGCTAAGT--------
dp5 Unknown_group_199:9634-9800 + ATATT-GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------CAATTTCTTCAAAA----------------------------------------------------GTCTACC------ATTTTGTTATACCCGTTA-------CTCG-AAGAGTATAGGGATACATTAGATTTGTGGTGAAAGTGGATGTGTGTAACACCGAGAAGGAAGCGTTTTGGATCCCATAAAGTATATATC----TTCTTGATCAGCATCAATAGCCAAATT-------
droPer2 scaffold_6250:1084-1242 + ATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCT--T--CCC--------CTATTCCTT--GAAT-----------------------------------------------------AT-CT------ATTTTATTATACCCGGTA-------CTCG-AAGAGTATAGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATA----TTCTTGATCAGCATCAAT----------------
droWil2 scf2_1100000004960:84755-84996 + TGC-----TGGTCGCCAGGCTCGACTTTGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGGCG-ATTTTAAATAAA----------T-ACCATACG---TTATGATATATTTTCATATGATATGAAATATT-TTAAA--------------------------------------TGTT---------GA------------GT-AA---------------------------------------------------A-----------TTTTTTTATACCATACA-------CCCA-TAGGGTGAAATGGTATATTAAAGTCGTCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATA----TTCTTGATCAGGATCAA-----------------
droVir3 scaffold_13042:3355265-3355320 - GATAT-GATTGTGGCCGAGCACGTCGTCATCGAGGATACAACATCCAAGGCGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:23277187-23277372 - AAGCC-GGAAGTT---------------------------------------------TT--------------------------------------------GGAGGATCTAA------------------A-ACAAAAT-------------------------------ACAGA-GTTCACAGGTAAATTT-----------------AAA-TCTAT--T--TAC----------------------------------------------------------------------------------------TATTTTTATACCCTGAACCCATTTTCAA-TGGGAAATCAGGGTATAATGGTTTAGTTGAA-------ATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATA----TTCTTGATCA------------------------
droGri2 scaffold_15110:18661248-18661370 - CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTATACCCTCAA-------CCAAGTGGGTAAAAAGGGTATAATGGTTTTGTTCAA-------ATGTATGTAACAGGCAGAAGGAATCATCTTCGACCCCATAAAACATATATA----TTCTTGATCACGGTCAA-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACAT-GATAGTTGCCGAGCACGTTATCGTCGAGGATACTTCGTCCAAGGCGTAAGTGTT--------------------------------------------GCAGAA-ATAA------------------A-ACAATATG------------------------------ACAGT-GTCAACTGCTAAATTC---------------------TATAT--T--TCC--------TAATTCTTTTGAAAC-----------------------------------------------------AT-----------TTATTTATACCCGTTG-------CTCG-TAGAGGAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAAAAG--------------CGTATCAAATATATATATATTTTGTTGATCATGATCAATTTTTAAATT-TGTTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAG--------------CGTA...................................................2617.00700000010005001000
...................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAA-------AAGTA....................................................................................27204.90980000005242004000000
...................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAAAAG--------------CGT....................................................2012.00200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAAAAG--------------CGTATCAAA..............................................2612.00200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAA........................................................................26121.6720000100002310103000
..................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAA-------AAG......................................................................................26201.60320000001616000000000
......................................................................................................................................................................................................................................................................................................................................................TCG-TAGAGGAAAAGGGTATACTAGA.........................................................................................................2511.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATTTTGTTGATCATGATCAA.................2711.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAAAAG--------------CGTATCAAATA............................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................GAA-------AAGTATGTAACAGGCAA........................................................................20201.0020000020000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATATTTTGTTGATCATGAT....................2611.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTATACTAGATTCGTTGAA-------AAG......................................................................................2911.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................AGAGGAAAAGGGTATACTAGA.........................................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCA.........................................................................24200.8517000000020000114000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCA.........................................................................25200.501000000080002000000
....................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAA-------AAG......................................................................................24200.5010000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGC..........................................................................23200.45900000071000001000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA-------.........................................................................................24200.40800000008000000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAAA.......................................................................27100.40400000013000000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGG...........................................................................23200.40800000000080000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGT....................................................................................................21200.40800000000008000000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA-------A........................................................................................25200.30600000060000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAA-------A........................................................................................26200.25500000050000000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAAAAG--------------.......................................................29100.20200000011000000000
.......................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAA-------AAG......................................................................................21200.20410100020000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAA-------AAG......................................................................................28200.20400000004000000000
.................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCAA........................................................................25120.17200000000000011000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA-------AA.......................................................................................26200.15300000030000000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCC.........................................................................25200.15300000000000003000
.........................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAA-------AAGTA....................................................................................21200.10200000002000000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAAAA......................................................................28100.10100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAG............................................................................22200.10200000000200000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAA-------.........................................................................................25200.10200000000000020000
...................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAA-------AA.......................................................................................24200.10200000000010010000
.........................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAA-------AAGT.....................................................................................20200.10200000020000000000
...............................................................................................................................................................................................................................................................................................................................................................................ATTCGTTGAA-------AAGTATGTAACAGGCAA........................................................................27120.08100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTTGTTGAT..........................15120.08100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGAA-------AAGTATGTAACAGGCAA........................................................................21190.05100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAAG--------------.......................................................22190.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAAAAG--------------.......................................................17200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGATTCGTTGAA-------AAGT.....................................................................................24200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAA-------AAGTATG..................................................................................25200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGG...........................................................................16200.05100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGAA-------AAGTATGTAACAGGC..........................................................................26200.05100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................ATTCGTTGAA-------AAGTATGTAACAGGC..........................................................................25200.05100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGC..........................................................................24200.05100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA-------AAGT.....................................................................................28200.05100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACAGGCAAAA......................................................................21200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................ATTCGTTGAA-------AAGTATGTAACAGG...........................................................................24200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................GTTGAA-------AAGTATGTAACA.............................................................................18200.05100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGG...........................................................................22200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................AGATTCGTTGAA-------AAGTATGTAACAGGC..........................................................................27200.05100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGAA-------AAGTA....................................................................................24200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGAA-------AAG......................................................................................18200.05110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAA-------AAG......................................................................................25200.05100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAA-------AAGTAT...................................................................................23200.05100000000100000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATT.......................................................................................................18200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGAA-------AA.......................................................................................25200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAA-------AAGTATGTAAC..............................................................................27200.05100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGA.................................................................................................23200.05100000000001000000
droSec2
GACAT-GATAGTTGCCGAGCACGTTGTCGTCGAGGATACTTCGTCCAAGGCGTAAGTGTT--------------------------------------------GCAGAA-ATAA------------------A-ACAATATG------------------------------ACAGT-GTAAACTGCTAAATTC---------------------TATAT--T--TCC--------TAATTCTTTTGAAAC-----------------------------------------------------AT-----------CTATTTATATCCGTTG-------CTCA-TAGAGGAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCAAAAG--------------CGTATAAAATATATATATATTTTGTTGATCATGATCAATTTTTAAATT-TTTTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCA.........................................................................25200.751515000
.................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGC..........................................................................23200.1533000
........................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAA-------AAGT.....................................................................................21200.1020200
.................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTATGTAACAGGCA.........................................................................24200.1022000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAA........................................................................26130.0811000
....................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAA-------AAGT.....................................................................................25200.0510100
......................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGA.................................................................................................18200.0510010
..........................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGAA-------AAGTAT...................................................................................21200.0511000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGG...........................................................................23200.0510001
dm3
GACAT-GATAGTTGCCGAGCACGTTGTCGTCGAGGATACTTCGTCCAAGGCGTAAGTGTT--------------------------------------------GCAGAA-ATAA------------------A-ACAATATG------------------------------ACAGT-GTCAACGGTTAAATTC---------------------TATAT--T--TCC--------TAATTTATTTGAAAC-----------------------------------------------------AT-----------CTATTTATTCCCGTTA-------CTCA-TAGAGGAAAAGGGTATACTAGATTCGTTGAA-------GT------------------------------------------ATATATAAAATTTGTTGATCAGGATCAATTTTTAAATTTTTTTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................TAGAGGAAAAGGGTATACTAGA.........................................................................................................2232.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000200100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATTTTTAAATTTT.....2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCCCGTTA-------CTCA-TAGAGGAA.......................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------GT------------------------------------------ATATATAAAATTTGT..............................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGAA-------GT------------------------------------------ATATATAAAATTTGTTG............................2320.5010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAA-------GT------------------------------------------ATATATAAAATTTGT..............................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................AGGATACTTCGTCCAAGGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATTTTTAAATTT......2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTT...................................................................................................21200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGT....................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000200000010000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................A-------CTCA-TAGAGGAAAAGGG..................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TAGAGGAAAAGGGTATACTAGATTC......................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TAGAGGAAAAGGGTATACTAGATTCGTT...................................................................................................2830.3310000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CTCA-TAGAGGAAAAGGGC.................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGGGTATACTAGATTCGT....................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GAAAAGGGTATACTAGATTCGTTGA.................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG..................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000200000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGT....................................................................................................20200.3060000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000003000
......................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGAA-------GT------------------------------------------.............................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGA.................................................................................................21200.2040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100010
....................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAA-------G........................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAA-------.........................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................GGTATACTAGATTCGTTGAA-------.........................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGA.................................................................................................24200.1020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGAA-------.........................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGT....................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTGAA-------.........................................................................................21200.0510000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGAA-------.........................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTGA.................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGT....................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................................AGAGGAAAAGGGTATATG............................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTG..................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATT.......................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGA.................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTGA.................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droEre2
ACG----ATCATTGCCCTGACCACTATCACATTGGATACCACGTAAGGAACCCACA-GAT----GTGGTTATCAGAAC-ATATCTTTATAGTTTCAACTT----GC------TTC------------------A-GA-----------------------------------------------------------------------------A-TCC--------------------------------------------------------------------------------------ATTTCCACTCGA-ATTTGTATGCCCTTTA-------CTCG-TGGGCTAACAGGGTATGCTAGATTCGTTGAA-------AAGTATGTAACAGGTAGAAGTAACCGTTTTCAGCCGTATAAAGTATATATA----TTCTTGATCAGGATCCAT----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................GTATGCTAGATTCGTTGA.................................................................................................18170.0610010000
droYak3
AACAA-GA--------GAAAACGCTATAGTCGAGTTTCC--CGACTGTCAAATAATCGTT--------------------------------------------GCCGTT-ATTC------------------A-GCA-TGTG------------------------------GAAGT-GCGAACACGAAATTTT------------------CAC-----ATTTT---------CA------------GT---------------------------------------------------------------------CATTATGCCCGTTA-------CTTG-TAGAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGGCATAAGGAAGCGTTTCCGACCATATAAAGTATATATA----TTCTTGATCAGGATCAAT----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................ATTC------------------A-GCA-TGTG------------------------------GAAGT-GCGA..................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................TTG-TAGAGTAAAAGGGTATACTAGA.........................................................................................................25200.20403010000000
................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGAAGCGTTTCCGACCATATAAAG..............................................2770.14100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCATAAGGAAGCGTTTCCGACCATA...................................................25170.12200200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATA----TTCTTGATCAGGATC...................22200.10202000000000
..................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAGTATGTAACAGGCATA.......................................................................25120.08101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCATAAGGAAG.................................................................21130.08100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCATAAGGAAGCGT..............................................................24130.08100000000001
..........................................................................................................................................................................................................................................................................................................................................................................................................CAGGCATAAGGAAGCGTTTCCGACCATA...................................................28140.07100100000000
.....................CGCTATAGTCGAGTTTCC--CGACTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................26160.06100001000000
................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCAT........................................................................26180.06101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGAAGCGTTTCCGACCATA...................................................23190.05100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCATAAGGAAGCGTTTCCGAC.......................................................21200.05100100000000
droEug1
GTCACTGTCAGTTACACAACATGCTTTCTCTGACAATAGGTGGCGCCTTGTGAATTTATA--------------------------------------------ATAG------------------------------------------G---------------AAAATGAATATT-ATAA--------------------------------------------------------A--------------ATTGTGTTAAACAGTAACGGGTATCTTATAGTCGCTACACTCGTTTATAGCGTTTC------CTCTTGTTATACCCGGTA-------CACG-TAGAGTAAAAGGGTATACTAGATTCGTTAAA-------AAGTATGTAACAGATACAAGGAAGCGTTTCCGACCCTATAAAGTATATATA----TTCTTGATCAGGATCAAT----------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAA-----------------------------------------------------TGTT--------------------------------------------AAAGAA-TTTC------------------A-TAAACA-------------------------------CACAGT-GTAAATTAGTGCTTTT------------------TG-TTTAT--T--TGTAAGTTTCA----------GTGAT-----------------------------------------------------A-----------TATTTTTATACCCGTTA-------CTCG-TAGAGTAAAAGGGTATACTAGATTCGTCGGA-------AAGTATTTACGAGGCAGAAGGAAGCGTTTCCGACCCCATAATGTATATATA----TTCTTGATCAGGATCA------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GATGT-GATAGTTTGCG-------------------------GAGTGTTAACGAGGA-------------------------------------------AGCTCCGGGT-GTTTAGGGGAGCTACAAAAAAAAAA-AATATGTAAAATCA---------------ACA---TACAAA-AAAAAATA----GTTCACTATTTTCTGAATTTTTCA-TGCAT--T--TTG--------------------------------------------------------------------------TTGTTTT------A-TTTTTTATACCCGTTA-------CTCG-TAGAGTAAAAGGGTATATTGTATTCGTGCAA-------AAGTATGTAACAGGGAGAAGGAAGCGTTTTCGACCCTA-AAAGTATATATA----TTCTTGATCAGGGTCA------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTGG--------------------------CAAGGAAACTTCAC----------ATTCTT--------------------------------------------GCATAT-AAAT------------------A-ACAAT-TTACATTACC---------------ATTT------------------TAAAACC---------------------CATA------------------AA-----------------------------------------------------------------------------TTTTCTTTGAACTTTTA-------CTCG-AAGAGTAAAAGGGTATATTGTGATCGTTGAA-------TAGTATGTAACAGGTAGAAGGATACGATTCCGTCCCTATAAAGTATATATA----TTCCTGATCAGGATCAAT----------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTA-----------------------TTGTCGAAGACATTATG---AAAACATAATT------------------------------------------------------------------------------------------------------TCTTGTAGTAATACAAAGT-TTAAAT------------------------------------ATTTT---------CC------------GT-TAATTTTTTTAATTTTTAA------------------------------------TTG--------ATATTTATACCCGTTA-------CTCG-TAGAGTAAAAGGGTATATTGTATTCGTGAAA-------AAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATA----TTCTTGATCAGGATCA------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTCCT-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-ACTTTAAAAC-----------------------------------------------------ATATT--------ACTTGTA-AACCGTTA-------CTTG-TAGAGTAAAAGGGTATACTGCATTTGTTGAA-------AAGAATGTAACAGGTCGAAGAGAGCACTTGCGACCTCATAGAGAATTTATA----TTTTTGATCAGAATCA------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GATAT-GATTGTCGCCGAGCATGTGGTCGTCGAGGATACAACGTCCAAGGCGTGAGTACAGATGAAAATTACTAGAAGG---------------------AGCTACTGA------------------------------------------------------------------GGT-GGCATCTCTTAATGTT---------------------TATTT--A--TTT--------TATTTTA-----------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------TTTGCTGGT---------TTTTTAAACCATTAATTSizeHit CountTotal NormTotal
No Reads
droAna3
GACAT-GATCGTGGCCGAGCACGTTGTGGTTGAGGATACCACCTCCAAGGCGTAAGTACTAGTTCTT-------------------------------------AATCTT-AAA-------------------AAA-AATTTTTAATATAA---------------ATTT---TAAAGCTAAAAGTA----GT----TGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGATTTTTTTAAATATTTCTT-------------------------------------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAAAT-TTTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------TTCATTCAAAAC-----------------------------------------------------ATTTC--------ATTTTTATACCCGGTA-------CTCG-AAGAGTACAAGGGTATATTGTAATCGTATGA-------ATGTACGTAACATAGAGA------------CAACATAATAACATATATATA----TTCTTGATCACCATCAATAGCTAAGT--------SizeHit CountTotal NormTotal
No Reads
dp5
ATATT-GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------CAATTTCTTCAAAA----------------------------------------------------GTCTACC------ATTTTGTTATACCCGTTA-------CTCG-AAGAGTATAGGGATACATTAGATTTGTGGTGAAAGTGGATGTGTGTAACACCGAGAAGGAAGCGTTTTGGATCCCATAAAGTATATATC----TTCTTGATCAGCATCAATAGCCAAATT-------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGTG..................................................................................232027.8055600000118460770
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGT...................................................................................22205.75115000000011500
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTG....................................................................................21202.5050000028000220
.................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTG....................................................................................20202.204404100003000
.................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTGTG..................................................................................22201.803603600000000
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGTGTA................................................................................25201.102202000000020
.........................................................................................................................................................................................................................................................................................................................................................................CATTAGATTTGTGGTGAAAGTG..........................................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATG......................................................................................19200.501000000010000
..................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTA................................................................................23200.4590800000010
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGTGTAAC..............................................................................27200.4590900000000
............................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTGGA........................................................................................21200.3570600000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATC----TTCTTGATCAGCATC...................2160.3320200000000
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGT.....................................................................................20200.3060000000060
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAA..........21200.3060411000000
..................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTAAC..............................................................................25200.3060600000000
...........................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAGTGGAT.......................................................................................23200.3060000000600
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATC----TTCTTGATCAGCATCA..................2170.2920100001000
...............................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTGGATGT.....................................................................................21200.2550000005000
.................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTGTGTA................................................................................24200.2550000000500
...........................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAGTGG.........................................................................................21200.2040400000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TTCTTGATCAGCATCAATAG..............2160.1710100000000
............................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAGTGGAT.......................................................................................22200.1530200001000
.................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTGTGTAAC..............................................................................26200.1530300000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATATC----TTCTTGATCA........................2170.1410100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATC----TTCTTGATCAGCA.....................2070.1410100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATC----TTCTTGATCAGCATCA..................2080.1310100000000
...............................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTGG.........................................................................................17200.1020000000101
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGAT.......................................................................................18200.1020010000010
......................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTGGATGTGTGTAAC..............................................................................21200.1020200000000
.............................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAGTGG.........................................................................................19200.1020000000200
...............................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAGTGGATGTGT...................................................................................23200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGA........................................................................................17200.0510000000100
...................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAGTGGATGTGT...................................................................................19200.0510000000100
..................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGT...................................................................................20200.0510000001000
.................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAGTGGATGTGTC..................................................................................22200.0510000001000
.....................................................................................................................................................................................................................................................................................................................................................................................GGTGAAAGTGGATGTGTGTAA...............................................................................21200.0510000001000
.............................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAGTGGAT.......................................................................................21200.0510000001000
....................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAGTGGATGTGTGTAAC..............................................................................23200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGTGT.................................................................................24200.0510000000010
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAGTGGATGTGA...................................................................................22200.0510010000000
............................................................................................................................................................................................................................................................................................................................................TA-------CTCG-AAGAGTATAGGG...................................................................................................................18200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAGTGGATGTGTGTAA...............................................................................24200.0510000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCA...........20200.0510000100000
droPer2
ATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCT--T--CCC--------CTATTCCTT--GAAT-----------------------------------------------------AT-CT------ATTTTATTATACCCGGTA-------CTCG-AAGAGTATAGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATA----TTCTTGATCAGCATCAAT----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCAGAAGGAATCGTTTCCG.........................................................25200.255050000
.........................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAATGG.........................................................................................23200.255050000
..............................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAATGGATG......................................................................................21200.255000005
....................................................................................................................................................................................................................................................................................................................................................................................................GTGTAACGTCCAGAAGGAATCGTT.............................................................24200.102020000
.........................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAATGGATG......................................................................................26200.102020000
...........................................................................................................................................................................................................................................................................................................................................GTA-------CTCG-AAGAGTATAGGGGT.................................................................................................................21200.102000002
................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTG..................................................................................23200.102020000
.................................................................................................................................................................................................................................................................................................................................................................TAGGGGTATATTAGATTTGTG...................................................................................................21200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................AATGGATGTGTGTAACGTC...........................................................................19200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGGAT.......................................................................................23200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAATGGATGTGTG..................................................................................20200.051000001
..........................................................................................................................................................................................................................CCT--T--CCC--------CTATTCCTT--GAAT-----------------------------------------------------AT-CT------A............................................................................................................................................................25200.051010000
....T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCT--T--CCC--------CTATTCCTT--GAAT-----------------------------------------------------AT-C....................................................................................................................................................................25200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................GTGAAAATGGATGTGTGT.................................................................................18200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGATGTGTGTAACGT............................................................................22200.051000001
..................................................................................................................................................................................................................................CCC--------CTATTCCTT--GAAT-----------------------------------------------------AT-CT------ATTTTAT......................................................................................................................................................27200.051010000
droWil2
TGC-----TGGTCGCCAGGCTCGACTTTGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGGCG-ATTTTAAATAAA----------T-ACCATACG---TTATGATATATTTTCATATGATATGAAATATT-TTAAA--------------------------------------TGTT---------GA------------GT-AA---------------------------------------------------A-----------TTTTTTTATACCATACA-------CCCA-TAGGGTGAAATGGTATATTAAAGTCGTCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATA----TTCTTGATCAGGATCAA-----------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................TGTCCAGAAAGCTTT--CCAAAGAGT------..............................................................................................................................................................................................................................................................................................................................................................................................................................24113.5539022350
..........................TTGTCCAGAAAGCTTT--CCAAAGAGT------..............................................................................................................................................................................................................................................................................................................................................................................................................................25111.0011000110
...........................TGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................25110.64701060
.............................TCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CC...............................................................................................................................................................................................................................................................................................................................................................................25110.36404000
.............................TCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------T................................................................................................................................................................................................................................................................................................................................................................................24110.36400040
...........................TGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................26110.27300030
.............................TCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGG.............................................................................................................................................................................................................................................................................................................................................................................27110.27303000
.............................TCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCG..............................................................................................................................................................................................................................................................................................................................................................................26110.27303000
TGC-----TGGTCGCCAGGCTCGACTTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.20302010
.........................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCATCTC...........................................................21200.20404000
...........TCGCCAGGCTCGACTTTGTCCAGAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................28100.20202000
...........TCGCCAGGCTCGACTTTGTCCAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.20303000
..........................TTGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................26110.18200020
...............................CAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGGCG-..........................................................................................................................................................................................................................................................................................................................................................................27120.17202000
........................................................................................................................................................................ATGAAATATT-TTAAA--------------------------------------TGTT---------..............................................................................................................................................................................................................................................1960.17100010
...........TCGCCAGGCTCGACTTTGTCCAGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................26150.13202000
.................................................................................................................................................................................................................................................................................................................................TTTATACCATACA-------CCCA-TAGGG..........................................................................................................................22200.10200020
....................TCGACTTTGTCCAGAAAGCTTT--CCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................25100.10101000
....................TCGACTTTGTCCAGAAAGCTTT--CCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................28100.10100010
.................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGG....................................................................20200.10202000
........................................................................................................................................................................................................................................................................................................................................................................ATATTAAAGTCGTCAAA-------ATGT.....................................................................................21200.10201010
............CGCCAGGCTCGACTTTGTCCAGAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................27100.10101000
.......................................................................................................................................................................................................................................................................................................................................................................................AA-------ATGTATGTAACAGGCAGAAGG....................................................................23200.10200020
..........................TTGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------T................................................................................................................................................................................................................................................................................................................................................................................27110.09100010
...........................TGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CC...............................................................................................................................................................................................................................................................................................................................................................................27110.09101000
.............................TCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGGCG-..........................................................................................................................................................................................................................................................................................................................................................................29110.09101000
...........................TGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------T................................................................................................................................................................................................................................................................................................................................................................................26110.09100010
............................GTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................24110.09100010
.............................TCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................23110.09100010
.........................TTTGTCCAGAAAGCTTT--CCAAAGAGT------..............................................................................................................................................................................................................................................................................................................................................................................................................................26110.09101000
..........................TTGTCCAGAAAGCTTT--CCAAAGAGT------T--------------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................27110.09100010
................................AGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGGC............................................................................................................................................................................................................................................................................................................................................................................25120.08101000
.................................GAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGGCG-..........................................................................................................................................................................................................................................................................................................................................................................25120.08101000
................................AGAAAGCTTT--CCAAAGAGT------T--------------------------------------------CCGGCG-..........................................................................................................................................................................................................................................................................................................................................................................26120.08100010
......................................CTTT--CCAAAGAGT------T--------------------------------------------CCGGCG-..........................................................................................................................................................................................................................................................................................................................................................................20130.08101000
......................................CTTT--CCAAAGAGT------T--------------------------------------------CCGGC............................................................................................................................................................................................................................................................................................................................................................................19130.08101000
............................................................................................................................................................................................................................................................................................................................................................................TAAAGTCGTCAAA-------ATGTATGTAACAGGC..........................................................................28140.07100100
........TGGTCGCCAGGCTCGACTTTGTCCAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................28140.07101000
...........TCGCCAGGCTCGACTTTGTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.07101000
...........TCGCCAGGCTCGACTTTGTCCAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07101000
............CGCCAGGCTCGACTTTGTCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07101000
TGC-----TGGTCGCCAGGCTCGACTTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.07100010
..............................................................................................................................................................................................................................................................................................................................................................................AAGTCGTCAAA-------ATGTATGTAACAGG...........................................................................25160.06101000
...............................................................................................................................................................................................................................................................................................................................................................TGAAATGGTATATTAAAGTCGTCA..................................................................................................24170.06100100
....................................................................................................................................................................................................................................................................................................................................................................................TCAAA-------ATGTATGTAACAGGCAG........................................................................22200.05110000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATCT............................................................25200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................TCAAA-------ATGTATGTAACAGGCA.........................................................................21200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................CGTCAAA-------ATGTATGTAACAGG...........................................................................21200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACCCCA...................................................22200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCATCTCCG.........................................................23200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCATC.............................................................18200.05101000
droVir3
GATAT-GATTGTGGCCGAGCACGTCGTCATCGAGGATACAACATCCAAGGCGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAGCC-GGAAGTT---------------------------------------------TT--------------------------------------------GGAGGATCTAA------------------A-ACAAAAT-------------------------------ACAGA-GTTCACAGGTAAATTT-----------------AAA-TCTAT--T--TAC----------------------------------------------------------------------------------------TATTTTTATACCCTGAACCCATTTTCAA-TGGGAAATCAGGGTATAATGGTTTAGTTGAA-------ATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATA----TTCTTGATCA------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATAATGGTTTA......................................................................................................25110.455500000
.................................................................................................................................................................................................................................................................................................................................................................................TAGTTGAA-------ATGTATGTAACAGG...........................................................................2250.201100000
..................................................................................................................................................................................................................................................................................................................................................................................AGTTGAA-------ATGTATGTAACAGG...........................................................................2150.201100000
.......................................................................................................................................................................................................................................................................................................................................................................TATAATGGTTTAGTTGAA-------ATG......................................................................................2170.141100000
......................................................................................................................................................................................................................................................................................................................................................................GTATAATGGTTTAGTTGAA-------AT.......................................................................................2170.141100000
droGri2
CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTATACCCTCAA-------CCAAGTGGGTAAAAAGGGTATAATGGTTTTGTTCAA-------ATGTATGTAACAGGCAGAAGGAATCATCTTCGACCCCATAAAACATATATA----TTCTTGATCACGGTCAA-----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:47 AM