ID:

dsi_11911

 Coordinate:

3r:5869133-5869282 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCTGTTTTTCTTTGTTTTTTCCCATATTTTGTCTGTCGTTTACATTCCTGTTTTTATTAACCCATGAGCACTGGTGGGAGCCCCTGCCCCCGAAATGAAACGAATCTCACCCCATAACAATAATATTCATTTGGCACAAGAGCAATTCCCATTTCCATTTGCATTCCGGTTACAAGTAGAACATCATCTATG
*************************************************************************...............................((.((.(((((......))))).)).))..******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M053
female body
 M024
male body		 GSM343915
embryo
 M023
head
................................................................................................................................................................................................................................CGGTTACAAGTAGAACATCATCTATG 26 0 1 5.00 5 0 3 1 1 0 0 0 0
.........................................................................TTTTTCCCATATTTTGTCTGTCGTT........................................................................................................................................................ 25 0 1 3.00 3 0 0 0 3 0 0 0 0
...............................................................................................................................................................................................................................CCGGTTACAAGTAGAACATCATCTATG 27 0 1 3.00 3 0 1 2 0 0 0 0 0
CGCAATCCGTATCGGTTGTATCGGA................................................................................................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0 0 0
.............GGTTGTATCGGAAATTCTAATTTC..................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................TTTTCCCATATTTTGTCTGTCGTT........................................................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCCGGTTACAAGTAGA............ 17 0 1 2.00 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGAGCAATTCCCATTTCCATTTGCATTC.......................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
CGCAATCCGTATCGGTTGTATCTGG................................................................................................................................................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 0 1 0
.............................................................................................................TTTTATTAACCCATGAGCACTGGTG.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................TTTCCCATATTTTGTCTGTCGTTTACA.................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................AACCCATGAGCACTGGTGGGAGCCCC............................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGGCACCAGAGCAATTCCCATTTCCA................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................TTCCCATATTTTGTCTGTCGTT........................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTGCATTCCAGTTACAAGTAGAAC.......... 25 1 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TTTGCATTCCGGTTACAAGTAGAACATCA...... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
..........ATCGGTTGTATCGGAAATTCT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................TGCCCCCGAAATGAAACGA......................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................TTTTCTTTGTTTTTTCCCATATTTTGTC............................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCCAGTTACAAGTAGAACATCATCT... 25 1 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................ATTTCCATTTGCATTCCGGTTACAAG................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........TCGGTTGTATCGGAAATTCTAATTTC..................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................TCCCATATTTTGTCTGTCGTTTACATT.................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
CGCAATCCGTGTCGGTTGTATCGGA................................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................................TGAGCACTGGTGGGAGCCCCTGCCCC...................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................TGTCGTTTACATTCCTGTTTTTAT....................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................AATGAAACGAATCTCACCCCATAACA......................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTCATTTGGCACCAGAGCAATTCCCA......................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................CCCGAAATGAAACGAATCTCACCCATA............................................................................. 27 3 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TCCATTTGCATTCCGGTTACAAGTAGAAC.......... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
..........ATCGGTTGTATCGGAAATTCTAATTT...................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCCGGTTACAAGTAGAACATCATCTATG 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCATTTGCATTCCGGTTACAAGTAGAAC.......... 29 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGCATTCCAGTTACAAGTAGAACA......... 24 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................TTTTATTAACCCATGAGCACTGGTGGGA................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................TTATTAACCCATGAGCACTGGTGGGA................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................TCCCATATTTTGTCTGTCGTTTACA.................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................TGAGCACTGGTGGGAGCCCCTGCCCCCGA................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................CCATTTGCATTCCGGTTACAAGTAGAACA......... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
........GTATCGGTTGTATCGGAAATTCTAATTTC..................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................TTTTTTCCCATATTTTGTCTGTCGTT........................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................TAACCCATGAGCACTGGTGGG.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGCATTCCGGTTACAAGTAGAACATCATC.... 29 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................GGCACAAGAGCAATTCC........................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCCGGTTACAAGTAGAACATCATC.... 25 0 1 1.00 1 0 0 0 0 0 1 0 0
...........................TTCTAATTTCCAACACGCTCAAAGTA..................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................TCCGGTTACAAGTAGAAC.......... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................TGAACACTGGTGGTATCC.............................................................................................................. 18 3 20 0.70 14 0 0 0 0 0 0 0 14
.....TCAGTATCGGCTGTATCGGAAAA.............................................................................................................................................................................................................................. 23 3 2 0.50 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................AGTAGAACATCAGCT... 15 1 17 0.06 1 0 0 1 0 0 0 0 0
.............................................................................................................................TGACTGGTGGGATCCCCT........................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCGTTAGGCATAGCCAACATAGCCTTTAAGATTAAAGGTTGTGCGAGTTTCATACAAAAGACAAAAAGAAACAAAAAAGGGTATAAAACAGACAGCAAATGTAAGGACAAAAATAATTGGGTACTCGTGACCACCCTCGGGGACGGGGGCTTTACTTTGCTTAGAGTGGGGTATTGTTATTATAAGTAAACCGTGTTCTCGTTAAGGGTAAAGGTAAACGTAAGGCCAATGTTCATCTTGTAGTAGATAC
********************************************************************************************************************...............................((.((.(((((......))))).)).))..************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
......................................................................................AACAGACAGCAAATGTAA.................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0
........................................................AAAAACAAAAAGAAACAAAAAAG........................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................AGGGTGAAGGTAAACATAAGG......................... 21 2 4 0.75 3 0 0 0 2 0 1 0
..........................................................................................................AGAACAATAAGTGGGTACTCG........................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................................................................GGGCTGTACTTTGCT......................................................................................... 15 1 3 0.33 1 0 0 0 0 1 0 0
...........................................................................................................CAAGAATAGCTGGGTACTCG........................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................TTGCTCAGAGTGGGGCATG........................................................................... 19 3 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................................ATTGTTATTATAAGTA.............................................................. 16 0 6 0.17 1 1 0 0 0 0 0 0
................................................................................................................ATGCTTGGGTACTCGTG......................................................................................................................... 17 2 6 0.17 1 0 0 0 0 1 0 0
............................................................................................................AAAAATAGCTGGGTACT............................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................TCAGTGTTCGCGTTAAGGG.......................................... 19 3 19 0.05 1 0 0 0 1 0 0 0
..................................................................................................................................................................AGAGTGGGGAATTGT......................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0
..................................................................................................ATGGAAGGACAAAAA......................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:5869083-5869332 - dsi_11911 CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------GTTTTT---CTTTGTTT-TTTCCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------GAAATG-AAACGAATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---TATG
droSec2 scaffold_25:379379-379627 - CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------GTTTTT---CTTTGTTT-TTTCCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------GAAATG-AAACGAATCTCACC-C----ATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGATTAC---------AAGTAGAACA---------TCATC---TATG
dm3 chr3R:15396744-15396994 + CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------GTTTTT---CTTTGTTTTTTTCCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCTCC-----------GAATTG-AAACGAATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---AATG
droEre2 scaffold_4770:6243106-6243352 - CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------ATTTTC---CTTTGTT---TTCCCATAA----------TTTGTCTGTCGTTCACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CGC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------AAAA-G-AAATGAATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---AATG
droYak3 3R:4146275-4146522 + CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACACTCAAAGTATGTTTTCT------TTTTTC---CTTTGTT---TTTCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CGC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------CAAATG-AAACGGATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCACC---AATG
droEug1 scf7180000409804:1683602-1683891 + CGCAATCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT--TTTCTCATACTCGTACTCCGTCTGTCTGTCGTTTGCATTCCTG-TTTTTTTTATTAACCCAT---A--CG--------CACTGAAC------AACAACAAGTGTG---GTGGAACAGCCC--CAT-CCCCCTTCAAATACCAAAAAGGAAAACCAATCTCACC-C---AATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------CCATC---AATG
droBia1 scf7180000302402:1170342-1170601 + CGCATTCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTTTCACAT----------TTTCTCTGTCGTTTACATTCCTG-TTT--TTTATTAACCCAT---G--AG--------CACCGAAC------AACAACAAGTGTG---GTGGAA-AGCCC--CCGTCCCCC-----------GA------AAA-AATCTCACCCC---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGCCAC---------AAGTAGAACA---------CCATC---AATG
droTak1 scf7180000415710:436222-436482 - CGCATTCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTCTCATATTT--------TCTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CACCGAGC------AACAACAAGAGTG---GTGGAAAAGCCCCCCTG-CCCC------------A---T--A-AA-AATCTCATC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---AATG
droEle1 scf7180000486474:14931-15195 + CGCAATCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------TTTCTCTTCTTTTGTT---TTCTCACAT----------TCTGTCTGTCGTTTACATTCCTG-TTTTTATTATTAACCCAT---G--AG--------CACCG---------AACAACAAGTGTGGCGGTGGG--AGTCC--CAA-CCCCC-----------AA-----AAAC-AATCTCACC-C---AATAACAATAATATTCATTTGG----CACAAGG-----------GC----AATATCCATTTCCATTTGCATTCCGATTAC---------AAGTAGAACA---------CCATC---AATG
droRho1 scf7180000779431:43324-43577 - CGCAATCTGTATCGGTTGTATCAGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTCTCATAC----------TCTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CACCG---------AACAACAAGTGTG---GTGGG--AGCCC--CGA-CCCCC-----------AA-----AAAC-AATCTCACC-C---AATAACAATAATAATCATTTGG----CACAAGG-----------GC----AATATCCATTTCCATTTGCATTCTAGTTAC---------GAGTAGAACA---------TCATC---AATG
droFic1 scf7180000454126:387944-388200 + CGCATTCGGCATCGGTCGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTCTCATAC----------CCTGTCAGTCGTTTACATTCCTG-TTC--TTTATTAACCCAT---G--AG--------CACCG---------TACAACAAGTGTG---GCGGG--ATCCC--CTGTCCCC------------CAA-C--AAAC-AATCTCACC-C---AATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTTGAACA---------TCTTC---AATG
droKik1 scf7180000302666:223225-223471 - CGCATTCTGTTTCGGTTGTATCGGAAATTCTGATTTCCAACACGCTCAAAGTATGTTTTCC------T--TTC---TTTTGTT---TTCTCATTT----------ACTGTCTGTTGT-------------T---TTTATTAACCCAT---G--AG--------CACCGAAAAAATAAAACTACAAGTGT------TGG---GTCC-ACGA-TCCCT-----------T------AAAC-AATCCCACC-C---AATAACCACAATACTCATTTGG----CACAGGG-----------GC----GATATCCATTCCCATTTGCATTCCGACTAC---------CAGTAGAGCA---------TCATC---AATG
droAna3 scaffold_13340:15001903-15002153 - CGCAATCTGTTTCAGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTCT------------TTC---TTTTGTT---TTCTCAT-T----------TCTGTCCGTTGTTTACATTCCCG-AT---TTTATTAACCCAC---G--AG--------CACCCA--------AACAACAAGTGTG---GCCCG--GGACC--CCGACCCC-------------------AAAC-AATCTCACC-AAACAATAACCATAATACTCATTCGG----CACTGGC-----------GC----AATTCCCATTTCCATTTGCATTCCGATTAC---------AAGTAGAGCA---------TCATC---AATG
droBip1 scf7180000395971:183229-183495 + CGCAATCTGTTTCAGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTCCACCCAAGTAT--TTC---TTTTGTT---TTCTCAT-T----------TCTGTCCGTTGTTTACATTCCCG-AT---TTTATTAACCCAC---G--AG--------CACCCA--------AACAACAAGTGTG---GCCCG--GGACC--CCGACCCC------------A-----------AATCTCACC-CAACAATAACCATAATATTCATTCGG----CACTGAA-----------GC----AATTCCCATTACCATTTGCATTCCGATTAC---------AAGTAGAGCATCTAGACCATCATC---AATG
dp5 2:29898971-29899176 + GAAAATCTGTTTCAGTTGTATCTGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCC------T--ATT---TTTTCTT---TTTTTCTAT----------TCTTCCACTCAT----------T-TC---TTC------------CTTGAGAGCCACCCCA--T---TAACC----------------------------------------TTTCAACCCTTTAAAT--AAAC-AATCTCATC-C---------AATAATATCCAT----------CAAGA-----------GA----CATTCCCATATGC----------------C---------ACATAGAACA---------TCATTTTGTATG
droPer2 scaffold_6:5268129-5268334 + GAAAATCTGTTTCAGTTGTATCTGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCC------T--ATT---TTTTCTT---TTTTTCTAT----------TCTTCCACTCAT----------T-TC---TTC------------CTTGAGAGCCGCCCCA--T---TAACC----------------------------------------TTTCAACCCTTTAAAT--AAAC-AATCTCATC-C---------AATAATATCCAT----------CAAGA-----------GA----CATTCCCATATGC----------------C---------ACATAGAACA---------TCATTTTGTATG
droVir3 scaffold_13047:16193655-16193894 - CA-GTTCAGTTTCAGTTGTAGCTCAAATTCTTATAACCAACACGCTCAAAGTACGTTTACT------CTTT------TATGTT---ATACC--------------TTTTTCTGTTAT-TACTTGTCCACAT-ATACTATTAACCCAC---CAGAG--------CATAA-----ATCTCACAACATGTGTT-----GG----GCC------------------------------------------------------CCATAATATTCATTTGTTGTACACAATAACGCACAACATACAATACACTCCCATTT-------CATACAAATTGCGTGAAACAAAAGTCGGG------------CATA---AATT
droMoj3 scaffold_6540:12508925-12509096 - CGAGTTCAGTCTCAGTTGTAGCTCAAATTCTTATTACCGACACGCTCAAAGTACGTTTACA------CTTTTT---ATTTACC---TTGTCTTAC----------------------TTTCATTTTTG-TT---ATTATTAACCCCCCCCCAGAGAGA---CCCA--T---AAATCTCATGGCATATTTG-----GG----GCC-------------------------------------TCTC----------TCTCAATAATATTCATTTG---------------------------------------------------------------------------------------------------
droGri2 scaffold_15116:1066244-1066362 - CA-GTTCAGTTTCAGTTGTAGCTCAAATTCTTATTACCAACACGCTCAAAGTACGTTTACT------CTTTTA---TGTTATAA--TTTTCTTCT----------TTTCTTTGTTAT-TACATGTCCCCAT-A-TATATGAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------GTTTTT---CTTTGTTT-TTTCCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------GAAATG-AAACGAATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---TATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................CGGTTAC---------AAGTAGAACA---------TCATC---TATG2615.00500000031000010000
..................................................................................TT-TTTCCCATAT----------TTTGTCTGTCGTT...............................................................................................................................................................................................................................................................2513.00300000000000030000
.....................................................................................................................................................................................................................................................................................................................................CCGGTTAC---------AAGTAGAACA---------TCATC---TATG2713.00300000012000000000
CGCAATCCGTATCGGTTGTATCGGA............................................................................................................................................................................................................................................................................................................................................................2513.00300000000003000000
.............GGTTGTATCGGAAATTCTAATTTC................................................................................................................................................................................................................................................................................................................................................2412.00200000000002000000
...................................................................................T-TTTCCCATAT----------TTTGTCTGTCGTT...............................................................................................................................................................................................................................................................2412.00200000020000000000
...................................................................................................................................................................................................................................................................................................................................TTCCGGTTAC---------AAGTAGA........................1712.00200000000002000000
...........................................................................................................................................................................................................................................................................................AGA-----------GC----AATTCCCATTTCCATTTGCATTC...............................................2811.00100000000001000000
..................................................................................................................................T---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTG.................................................................................................................................................................................2511.00100000000001000000
.....................................................................................TTTCCCATAT----------TTTGTCTGTCGTTTACA...........................................................................................................................................................................................................................................................2711.00100000010000000000
............................................................................................................................................AACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--C.....................................................................................................................................................................2611.00100000000001000000
......................................................................................TTCCCATAT----------TTTGTCTGTCGTT...............................................................................................................................................................................................................................................................2211.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................TTTGCATTCCGGTTAC---------AAGTAGAACA---------TCA.........2911.00100000010000000000
..........ATCGGTTGTATCGGAAATTCT......................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
................................................................................................................................................................................................................TG-CCCCC-----------GAAATG-AAACGA.....................................................................................................................................1911.00100000000001000000
.....................................................................TTTT---CTTTGTTT-TTTCCCATAT----------TTTGTC......................................................................................................................................................................................................................................................................2811.00100000000001000000
......................................................................................................................................................................................................................................................................................................................ATTTCCATTTGCATTCCGGTTAC---------AAG............................2611.00100000000001000000
...........TCGGTTGTATCGGAAATTCTAATTTC................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.......................................................................................TCCCATAT----------TTTGTCTGTCGTTTACATT.........................................................................................................................................................................................................................................................2711.00100000010000000000
..................................................................................................................................................T---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCCC..............................................................................................................................................................2611.00100000000001000000
...............................................................................................................TGTCGTTTACATTCCTG-TT---TTTAT..........................................................................................................................................................................................................................................2411.00100000000001000000
.....................................................................................................................................................................................................................................AATG-AAACGAATCTCACC-C---CATAACA.................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................CCC-----------GAAATG-AAACGAATCTCACC-C---ATA.....................................................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................TCCATTTGCATTCCGGTTAC---------AAGTAGAAC......................2911.00100000010000000000
..........ATCGGTTGTATCGGAAATTCTAATTT.................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................TCCGGTTAC---------AAGTAGAACA---------TCATC---TATG2811.00100000010000000000
..................................................................................................................................T---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--A............................................................................................................................................................................2811.00100000010000000000
.......................................................................................................................................TTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--A............................................................................................................................................................................2611.00100000010000000000
.......................................................................................TCCCATAT----------TTTGTCTGTCGTTTACA...........................................................................................................................................................................................................................................................2511.00100000001000000000
..................................................................................................................................................T---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------GA................................................................................................................................................2911.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................CCATTTGCATTCCGGTTAC---------AAGTAGAACA---------............2911.00100000010000000000
........GTATCGGTTGTATCGGAAATTCTAATTTC................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.................................................................................TTT-TTTCCCATAT----------TTTGTCTGTCGTT...............................................................................................................................................................................................................................................................2611.00100000000000010000
...........................................................................................................................................TAACCCAT---G--AG--------CAC----------------------TG---GTGGG--.............................................................................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................TGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---....2911.00100000001000000000
.................................................................................................................................................................................................................................................................................GG----CACAAGA-----------GC----AATTCC................................................................1711.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................TTCCGGTTAC---------AAGTAGAACA---------TCATC---....2511.00101000000000000000
...........................TTCTAATTTCCAACACGCTCAAAGTA................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................TCCGGTTAC---------AAGTAGAAC......................1811.00100000001000000000
droSec2
CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------GTTTTT---CTTTGTTT-TTTCCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------GAAATG-AAACGAATCTCACC-C----ATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGATTAC---------AAGTAGAACA---------TCATC---TATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............GTTGTATCGGAAATTCTAATT..................................................................................................................................................................................................................................................................................................................................................2111.0010010
...................................................................................................................................................................................................................................................................................................................................TTCCGATTAC---------AAGTAGAACA---------TCATC---....2511.0011000
...................................TCCAACACGCTCAAAGTATGTTTTCT------GT................................................................................................................................................................................................................................................................................................................2811.0011000
dm3
CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------GTTTTT---CTTTGTTTTTTTCCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CCTCC-----------GAATTG-AAACGAATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---AATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........TATCGGTTGTATCGGAAATTCTAATT..................................................................................................................................................................................................................................................................................................................................................26119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000035010000000000000000130001020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TTTGCATTCCGGTTAC---------AAGTAGAACA---------............26115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000004000000040102030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTCCTG-TT---TTTATTAACCCAT---G--AG--------C.................................................................................................................................................................................................................25111.00110000000000000000000000000000000000000000001000101000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000300000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TAC---------AAGTAGAACA---------TCATC---AAT.21111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................CCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--C.....................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................TCCCATAT----------TTTGTCTGTCGTTTACATT.........................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000
...........TCGGTTGTATCGGAAATTCTAATT..................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................TTCATTTGG----CACAAGA-----------GC----AAT...................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--A............................................................................................................................................................................2516.0060000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TTCATTTGG----CACAAGA-----------GC----AATTCCCA..............................................................2616.0060000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................TTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--C.....................................................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................TGCATTCCGGTTAC---------AAGTAGA........................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TCT------GTTTTT---CTTTGTTTTTTTCCCA.........................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--C.....................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................TTTTTTTCCCATAT----------TTTGTCTGTCGTT...............................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................TGCATTCCGGTTAC---------AAGTAGAACA---------TC..........2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTG-AAACGAATCTCACC-C---CATAACAA................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TATTCATTTGG----CACAAGA-----------GC----AATTCCC...............................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
..............................................................................................T----------TTTGTCTGTCGTTTACATTCCTG-T...................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TAATATTCATTTGG----CACAAGA-----------GC----AAT...................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................TCCGGTTAC---------AAGTAGAACA---------TCATC---AA..2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTTTTCCCATAT----------TTTGTCTGTCGTT...............................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TATTCATTTGG----CACAAGA-----------GC----AATTCCCA..............................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................ATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGC..........................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................CCCATAT----------TTTGTCTGTCGTTTACATT.........................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
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.................................................................................................................................................................................................................................................TCTCACC-C---CATAACAATAATATTCATT.....................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCCCATAT----------TTTGTCTGTCGTTTACA...........................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCCGGTTAC---------AAGTAGAACA---------TCATC---AATG2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CACGCTCAAAGTATGTTTTCT------GTTT..............................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................ATTCCGGTTAC---------AAGTAGA........................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TAACCCAT---G--AG--------CAC----------------------TG---GTGGG--AGCCC--......................................................................................................................................................................2613.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TACATTCCTG-TT---TTTATTAACCCAT---G--AG--------C.................................................................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TTTCCATTTGCATTCCGGTTAC---------AAG............................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCCGGTTAC---------AAGTAGAAC......................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCC-----------GAATTG-AAACGAATCTCACC-C---CA......................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TCCCATTTCCATTTGCATTCCGGT...........................................2413.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TT---TTTATTAACCCAT---G--AG--------CAC----------------------TG---GTGGG--.............................................................................................................................................................................2813.0030000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TTTTT---CTTTGTTTTTTTCCCATAT----------TT..........................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCCAACACGCTCAAAGTATGTTTTCT------GT................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TTGTCTGTCGTTTACATTCCTG-TT---TT.............................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTGG----CACAAGA-----------GC----AATTCCCATTTC..........................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................TG-CCTCC-----------GAATTG-AAACGAATCTCACC-............................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CATTTGCATTCCGGTTAC---------AAGTAGAA.......................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TCCTG-TT---TTTATTAACCCAT---G--AG--------CAC----------------------T........................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TACATTCCTG-TT---TTTATTAACCCAT---...............................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGCAATCCGTATCGGTTGTATCGGA............................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................TTTGG----CACAAGA-----------GC----AATTCCCATT............................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCCGGTTAC---------AAGTAGAACA---------TCATC---....2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................AT---G--AG--------CAC----------------------TG---GTGGG--AGC..........................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................AATTCCCATTTCCATTTGCATTCCGGT...........................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................CCAACACGCTCAAAGTATGTTTTCT------GT................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CCGGTTAC---------AAGTAGAACA---------TCATC---AA..2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TCACC-C---CATAACAATAATATTCATT.....................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................................TAC---------AAGTAGAACA---------TCATC---....1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TAT----------TTTGTCTGTCGTTTACATTCC.......................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AACAATAATATTCATTTGG----CACAAGA-----------GC----......................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TGTTTTCT------GTTTTT---CTTTGTTTTTTT.............................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TATGTTTTCT------GTTTTT---CTTTGTTTTT...............................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................T---G--AG--------CAC----------------------TG---GTGGG--AGCCC--CTG-CC................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GCATTCCGGTTAC---------AAGTAGAACA---------TCATC---....2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TCCTG-TT---TTTATTAACCCAT---G--AG--------C.................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTGTTTTTTTCCCATAT----------TTTGTCTGT...................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................TCCGGTTAC---------AAGTAGAACA---------TC..........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTGTATCGGAAATTCTAATTT.................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTTCCCATAT----------TTTGTCTGTCGTT...............................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TCCATTTGCATTCCGGTTAC---------AAGTAGAA.......................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TGCATTCCGGTTAC---------AAGTAGAAC......................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TCTGTCGTTTACATTCCTG-TT---TTTATT.........................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TAACAATAATATTCATTTGG----CACAAGA-----------G...........................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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droEre2
CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------ATTTTC---CTTTGTT---TTCCCATAA----------TTTGTCTGTCGTTCACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CGC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------AAAA-G-AAATGAATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---AATGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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CGCAATCCGTATCGGTTGTATCGGA............................................................................................................................................................................................................................................................................................................................................................2511.0010001000
........................................................................................................................................TATTAACCCAT---G--AG--------CGC----------------------TG---GTGGG--AG...........................................................................................................................................................................2611.0011000000
.......................................................................................TCCCATAA----------TTTGTCTGTCGTTCACATTCC.......................................................................................................................................................................................................................................................2911.0011000000
........................AAATTCTAATTTCCAACACGCT.......................................................................................................................................................................................................................................................................................................................................2211.0010000010
.................................................................................................................................................................................................................................................................................................................TTCCCATTTCCATTTGCATTCCGGT...........................................2511.0011000000
droYak3
CGCAATCCGTATCGGTTGTATCGGAAATTCTAATTTCCAACACACTCAAAGTATGTTTTCT------TTTTTC---CTTTGTT---TTTCCATAT----------TTTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CGC----------------------TG---GTGGG--AGCCC--CTG-CCCCC-----------CAAATG-AAACGGATCTCACC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCACC---AATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................TG-AAACGGATCTCACC-C---CATAACAAT...............................................................................................................2611.00101000000000
......................................................................................................................TACATTCCTG-TT---TTTATTAACCCAT---G--AG--------..................................................................................................................................................................................................................2811.00101000000000
droEug1
CGCAATCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT--TTTCTCATACTCGTACTCCGTCTGTCTGTCGTTTGCATTCCTG-TTTTTTTTATTAACCCAT---A--CG--------CACTGAAC------AACAACAAGTGTG---GTGGAACAGCCC--CAT-CCCCCTTCAAATACCAAAAAGGAAAACCAATCTCACC-C---AATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------CCATC---AATGSizeHit CountTotal NormTotal
No Reads
droBia1
CGCATTCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTTTCACAT----------TTTCTCTGTCGTTTACATTCCTG-TTT--TTTATTAACCCAT---G--AG--------CACCGAAC------AACAACAAGTGTG---GTGGAA-AGCCC--CCGTCCCCC-----------GA------AAA-AATCTCACCCC---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGCCAC---------AAGTAGAACA---------CCATC---AATGSizeHit CountTotal NormTotal
No Reads
droTak1
CGCATTCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTCTCATATTT--------TCTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CACCGAGC------AACAACAAGAGTG---GTGGAAAAGCCCCCCTG-CCCC------------A---T--A-AA-AATCTCATC-C---CATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTAGAACA---------TCATC---AATGSizeHit CountTotal NormTotal
No Reads
droEle1
CGCAATCTGTATCGGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------TTTCTCTTCTTTTGTT---TTCTCACAT----------TCTGTCTGTCGTTTACATTCCTG-TTTTTATTATTAACCCAT---G--AG--------CACCG---------AACAACAAGTGTGGCGGTGGG--AGTCC--CAA-CCCCC-----------AA-----AAAC-AATCTCACC-C---AATAACAATAATATTCATTTGG----CACAAGG-----------GC----AATATCCATTTCCATTTGCATTCCGATTAC---------AAGTAGAACA---------CCATC---AATGSizeHit CountTotal NormTotal
No Reads
droRho1
CGCAATCTGTATCGGTTGTATCAGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTCTCATAC----------TCTGTCTGTCGTTTACATTCCTG-TT---TTTATTAACCCAT---G--AG--------CACCG---------AACAACAAGTGTG---GTGGG--AGCCC--CGA-CCCCC-----------AA-----AAAC-AATCTCACC-C---AATAACAATAATAATCATTTGG----CACAAGG-----------GC----AATATCCATTTCCATTTGCATTCTAGTTAC---------GAGTAGAACA---------TCATC---AATGSizeHit CountTotal NormTotal
No Reads
droFic1
CGCATTCGGCATCGGTCGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCT------T--TTC---TTTTGTT---TTCTCATAC----------CCTGTCAGTCGTTTACATTCCTG-TTC--TTTATTAACCCAT---G--AG--------CACCG---------TACAACAAGTGTG---GCGGG--ATCCC--CTGTCCCC------------CAA-C--AAAC-AATCTCACC-C---AATAACAATAATATTCATTTGG----CACAAGA-----------GC----AATTCCCATTTCCATTTGCATTCCGGTTAC---------AAGTTGAACA---------TCTTC---AATGSizeHit CountTotal NormTotal
No Reads
droKik1
CGCATTCTGTTTCGGTTGTATCGGAAATTCTGATTTCCAACACGCTCAAAGTATGTTTTCC------T--TTC---TTTTGTT---TTCTCATTT----------ACTGTCTGTTGT-------------T---TTTATTAACCCAT---G--AG--------CACCGAAAAAATAAAACTACAAGTGT------TGG---GTCC-ACGA-TCCCT-----------T------AAAC-AATCCCACC-C---AATAACCACAATACTCATTTGG----CACAGGG-----------GC----GATATCCATTCCCATTTGCATTCCGACTAC---------CAGTAGAGCA---------TCATC---AATGSizeHit CountTotal NormTotal
No Reads
droAna3
CGCAATCTGTTTCAGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTCT------------TTC---TTTTGTT---TTCTCAT-T----------TCTGTCCGTTGTTTACATTCCCG-AT---TTTATTAACCCAC---G--AG--------CACCCA--------AACAACAAGTGTG---GCCCG--GGACC--CCGACCCC-------------------AAAC-AATCTCACC-AAACAATAACCATAATACTCATTCGG----CACTGGC-----------GC----AATTCCCATTTCCATTTGCATTCCGATTAC---------AAGTAGAGCA---------TCATC---AATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................T-T----------TCTGTCCGTTGTTTACATTCCCG-A...................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................TAACCCAC---G--AG--------CACCCA--------AACAACAAG...........................................................................................................................................................................................2611.001100000
..................................TTCCAACACGCTCAAAGTATGTCT------------TC.............................................................................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................................................................................................................................................................................TCATTCGG----CACTGGC-----------GC----AATTCCCATT............................................................2711.001100000
..........................................................................................CAT-T----------TCTGTCCGTTGTTTACATTCCCG-A...................................................................................................................................................................................................................................................2811.001100000
droBip1
CGCAATCTGTTTCAGTTGTATCGGAAATTCTAATTTCCAACACGCTCAAAGTATGTCCACCCAAGTAT--TTC---TTTTGTT---TTCTCAT-T----------TCTGTCCGTTGTTTACATTCCCG-AT---TTTATTAACCCAC---G--AG--------CACCCA--------AACAACAAGTGTG---GCCCG--GGACC--CCGACCCC------------A-----------AATCTCACC-CAACAATAACCATAATATTCATTCGG----CACTGAA-----------GC----AATTCCCATTACCATTTGCATTCCGATTAC---------AAGTAGAGCATCTAGACCATCATC---AATGSizeHit CountTotal NormTotal
No Reads
dp5
GAAAATCTGTTTCAGTTGTATCTGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCC------T--ATT---TTTTCTT---TTTTTCTAT----------TCTTCCACTCAT----------T-TC---TTC------------CTTGAGAGCCACCCCA--T---TAACC----------------------------------------TTTCAACCCTTTAAAT--AAAC-AATCTCATC-C---------AATAATATCCAT----------CAAGA-----------GA----CATTCCCATATGC----------------C---------ACATAGAACA---------TCATTTTGTATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GAAAATCTGTTTCAGTTGTATCTGAAATTCTAATTTCCAACACGCTCAAAGTATGTTTTCC------T--ATT---TTTTCTT---TTTTTCTAT----------TCTTCCACTCAT----------T-TC---TTC------------CTTGAGAGCCGCCCCA--T---TAACC----------------------------------------TTTCAACCCTTTAAAT--AAAC-AATCTCATC-C---------AATAATATCCAT----------CAAGA-----------GA----CATTCCCATATGC----------------C---------ACATAGAACA---------TCATTTTGTATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................ATTCCCATATGC----------------C---------ACATAGAACA---------TC..........2511.001100000
droVir3
CA-GTTCAGTTTCAGTTGTAGCTCAAATTCTTATAACCAACACGCTCAAAGTACGTTTACT------CTTT------TATGTT---ATACC--------------TTTTTCTGTTAT-TACTTGTCCACAT-ATACTATTAACCCAC---CAGAG--------CATAA-----ATCTCACAACATGTGTT-----GG----GCC------------------------------------------------------CCATAATATTCATTTGTTGTACACAATAACGCACAACATACAATACACTCCCATTT-------CATACAAATTGCGTGAAACAAAAGTCGGG------------CATA---AATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....TCAGTTTCAGTTGTAGCTCAAATTCTTA....................................................................................................................................................................................................................................................................................................................................................2813.003000000000000000000000000001200000000000000000000000000000000000
..................................................................................................................................T-ATACTATTAACCCAC---CAGAG--------CATAA-----A.......................................................................................................................................................................................................2712.002000000000000000000000000000000000000002000000000000000000000000
...........................................................................................................................................................................................GTT-----GG----GCC------------------------------------------------------CCATAATATTCATTTGTTG................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................TAA-----ATCTCACAACATGTGTT-----GG----GCC------------------------------------------------------C..................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
.............................................TCAAAGTACGTTTACT------CTTT------TATGTT---A..............................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CACAACATACAATACACTCCCATTT-------CA..................................................2711.001000000000000000000000000000000000000001000000000000000000000000
..........................................................ACT------CTTT------TATGTT---ATACC--------------TTTTTCTG....................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
...............................TATAACCAACACGCTCAAAGTACGTT............................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
...................AGCTCAAATTCTTATAACCAACACGC........................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACTATTAACCCAC---CAGAG--------CATAA-----ATC.....................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TAACCCAC---CAGAG--------CATAA-----ATCTCACA................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
..................................AACCAACACGCTCAAAGTACGTTTACT------CC................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
..............................TTATAACCAACACGCTCAAAGTACGTT............................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................ATTGCGTGAAACAAAAGTCGGG------------C..........2311.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CAC---CAGAG--------CATAA-----ATCTCACAACATGTGT........................................................................................................................................................................................2911.001000000000000000000000000000100000000000000000000000000000000000
....TTCAGTTTCAGTTGTAGCTCAAATTCT......................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................TATGTT---ATACC--------------TTTTTCTGTTAT-TAC............................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................GTTAT-TACTTGTCCACAT-ATACTAT..........................................................................................................................................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
CGAGTTCAGTCTCAGTTGTAGCTCAAATTCTTATTACCGACACGCTCAAAGTACGTTTACA------CTTTTT---ATTTACC---TTGTCTTAC----------------------TTTCATTTTTG-TT---ATTATTAACCCCCCCCCAGAGAGA---CCCA--T---AAATCTCATGGCATATTTG-----GG----GCC-------------------------------------TCTC----------TCTCAATAATATTCATTTG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................TTG-----GG----GCC-------------------------------------TCTC----------TCTCAATAAT............................................................................................................2211.001100000
................................................................................................................................................................................TCATGGCATATTTG-----GG----GCC-------------------------------------TCTC----------TCTC..................................................................................................................2711.001100000
droGri2
CA-GTTCAGTTTCAGTTGTAGCTCAAATTCTTATTACCAACACGCTCAAAGTACGTTTACT------CTTTTA---TGTTATAA--TTTTCTTCT----------TTTCTTTGTTAT-TACATGTCCCCAT-A-TATATGAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:29 PM