ID:

dsi_11905

 Coordinate:

2r:6663412-6663638 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-63.3 -63.2 -63.2

Flybase annnotation

exon [2r_6663639_6663820_-]; CDS [2r_6663639_6663820_-]; exon [2r_6663311_6663411_-]; CDS [2r_6663311_6663411_-]; intron [2r_6663412_6663638_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCATCTAAACACTACATAAATCATAAGTCCCTTTGGGGAGCTGGAGGAAGCGATGGGAAAGGCAAAGGAGCAGGCAAACACGCATCAGTGTTTAACCCGAATAAGTGTCTGCCTGCGGTTTTCCTTTTACGGGGGATTATCCCCCATCAGGCAGGCTTCCCTTTCCCTGCTCCACTAAAAACACACCCAAACCATGCGCCTTGTAACTGATTTGTTTTCGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGTGA
**************************************************.(((.((((......................((((....))))(((......))))))).))).......((((((((.((((((......)))))).....(((.....(((((((((.((....))......((((((...))))))..)))))))))......))))))))))).....................((((......(((......)))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................AGGGGAGCTGGAGGAATTGATGG......................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................CGGTTTTCCTTTTACGGGG........................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................GGAGCAGATGAACCAAGTCCTGGATGC.............................. 27 3 1 1.00 1 1 0 0 0 0 0
.........................TTTCCGATCCCTCGAGAAGGAGC....................................................................................................................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ATGCCTTGTTCGAGCGAA................ 18 2 3 0.33 1 0 0 1 0 0 0
TCGTGTCGATGAAGAACGTA................................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0
......................................................................................TCGGGGAGCTGTAGTAAGC.............................................................................................................................................................................................................................. 19 3 7 0.14 1 1 0 0 0 0 0
..GGGTCGGTGAAGAAC...................................................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 1
..................................................................................................AGGAGGCTATGGGAAAGG................................................................................................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0
....................................................................................CTTTGGGGAGCTGTA.................................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 1 0
................................................................................GTCCCTTTGGCGCGCTG...................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 1 0 0 0
..............................GAACCCTCGTGAAGGA......................................................................................................................................................................................................................................................................................... 16 2 19 0.05 1 0 0 0 0 1 0
.................................CCCGCCAGAAGGAGCGGGT................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

AGCTCAGCCACTTCTTGCAGGAGGAGAAGGCTAGGGAGCTCTTCCTCGTCCAAGCGTAGATTTGTGATGTATTTAGTATTCAGGGAAACCCCTCGACCTCCTTCGCTACCCTTTCCGTTTCCTCGTCCGTTTGTGCGTAGTCACAAATTGGGCTTATTCACAGACGGACGCCAAAAGGAAAATGCCCCCTAATAGGGGGTAGTCCGTCCGAAGGGAAAGGGACGAGGTGATTTTTGTGTGGGTTTGGTACGCGGAACATTGACTAAACAAAAGCGTCTACTTGGTTCAGGACCTACGGTACAAGCTCGCCTTCCAAGTCGGCCCACT
**************************************************.(((.((((......................((((....))))(((......))))))).))).......((((((((.((((((......)))))).....(((.....(((((((((.((....))......((((((...))))))..)))))))))......))))))))))).....................((((......(((......)))..)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
.............................................................................................................................................................................................................................................................GAATATTGACTAAACAAA........................................................ 18 1 3 0.33 1 1 0 0 0 0
......................GGAGAAGGCTATGGAG................................................................................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 1 0 0 0
.........................GAAGGCTATGGAGGTCGTCC.......................................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0
...............................................GTCCAAGCGAAGATT......................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 1 0 0 0 0
...........................AGGGTGTGGAGCTCTTCCTC........................................................................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 1 0 0
...............................................................................................ACCTCGCTCGCTACCCTT...................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 1
..........................AAGGCTATGGAGGTCTT............................................................................................................................................................................................................................................................................................ 17 2 9 0.11 1 0 0 1 0 0
.....................AGGAGCAGGCTAGGGATCA............................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 2 0
......................GGAGTAGGCTAGGGATC................................................................................................................................................................................................................................................................................................ 17 2 13 0.08 1 1 0 0 0 0
..............................CTAGGGAGCTCAACCTGGT...................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0
......................GGAGCAGGCTAGGGA.................................................................................................................................................................................................................................................................................................. 15 1 16 0.06 1 1 0 0 0 0
......................GGAGTAGGCTAGGGA.................................................................................................................................................................................................................................................................................................. 15 1 16 0.06 1 1 0 0 0 0
.....................AAGAGAAGGCTATGGA.................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0
..............TTGCTGGATGAGAGGGCT....................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6663362-6663688 - dsi_11905 TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------CT------------------------------------------AA----------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCCCTTTGGG--GAGCTGGAGGA---AGCGATG-------G------------------------------------------------GAAAGGCA------------AAGGAGC--A---GGCAAAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------CC-TTTC-------------CC----TG--CTCCACTAAAAACACACCCA----A----------------------------------------------------------------------------------------ACCAT-GCGC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGTGA
droSec2 scaffold_1:3500896-3501222 - TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------CT------------------------------------------AC----------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCCCTTTGGG--GAGCTGGAGGA---AGCGATG-------G------------------------------------------------GAAAGGCA------------ACGGAGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------CC-TTCC-------------CC----TG--CTCCACCAAAAACACACCCA----C----------------------------------------------------------------------------------------ACCAT-GCGC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGTGA
dm3 chr2R:5886981-5887288 - TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------CT------------------------------------------AT----------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCTCGGGG--GAT------------------------------------------------------------------------------GGAA------------AAGAAGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTTGC---------------------------GGG---GGATTATCCC----------CCATCAAGCT------------GGCTTC-------------CC-TTCC-------------CG----CG--CTCCACCAAAAACACACCCA----C----------------------------------------------------------------------------------------ACCAT-GCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGTTCAGCCGGGTGA
droEre2 scaffold_4929:8481822-8482131 + TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------C-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AATCTCTC-GGG--GAGCTGAAAGCA--GGCG-GG-------G------------------------------------------------AA-------------------AAAGGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCC------------GGCTTC-------------CC------------------GG----TG--CTCCCCCA-AAATGGACTCG----C----------------------------------------------------------------------------------------ACCAG-GCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGCGA
droYak3 2L:18515513-18515851 - TTGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------G---------C-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCTCGGGG--GAGCTGGAAGA---AGTGATGGGGATGGG--------AATGGGAAAGG-CGTA-------GGG----------------GAAGGG-----------AAAGGAGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------G-G---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------CC------------------TT----GG--CTCCCC---AAATAGACCCA----C----------------------------------------------------------------------------------------ACCAT-GTCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGTGA
droEug1 scf7180000409209:291748-292076 + TGGAGTCGGTGAAGAATGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTTCGTA--------T---------T-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCTC-GGGG-AA------AGGATTTG---T-------------------------------------------------------------GGGG------------AAGGAGCCCC---GGCATACATCACGCAACAGCGT-TTAACCCGAATAAATGT--------GTGTTGTGCCTGCGGTTT----CCCTTTTA-C---------------------------TGG---GGATTATCCC----------CCATCAGGCA----------GAGGCC---------------CC--CA-CCC-----------T----TA--CTTCCC---A-----------------------------------------------------------------------------C-ATTT-CC-CTCGAAAATCATCATCATC--ATCGC-CTTGTAACTGATTTGTTA----------------T--TGCAGATGAACCAAGTCCTGGATGCGATGTTCGAGCGAAAGGTTCAGCCGGGCGA
droBia1 scf7180000301506:812030-812353 + TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAAGAGCAGGTTCGTGGCA-----G---------CC------------------------------------------AC-T--------A-----------------------------------------------------------------CACTG-------CATAAATCATA-TCATAACGAGGGGAGTCCCCC-G--------------------------------G------------------------------------------------AAAAGGGG------------CAGGAGC--A---GGCACAC---ACGCATCCGCGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTG----CCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCG------------GGCT-------------GCTG-TCCC-------------CA----TC--CTCCTC---------------------------------------------------------------T------------------------CCTCTGGG-ACCTATAG--CTC--ACCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAGGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCCGGCGA
droTak1 scf7180000415870:363369-363671 + TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAAGAGCAGGTTCGCA--------T---------C-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCG--GGG--GAGCTC----------------------A------------------------------------------------GAAAGGGG------------AAGGAGC--A---GGCACAC---ACGCATCCGCGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------TG------------------CT----TG--CTCCCC-----------CCA----C--------------------------------------------T------------------------CC-CTGGGAAA---------TC--AGCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCGATGTTTGAGCGGAAGGTTCAGCCGGGCGA
droEle1 scf7180000491107:1204706-1205040 + TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTACGTCGCC-----A---------CC------------------------------------------AC----------A---------------------------------------------------------------CTCACTA-------CATAAATCATA--------------AGTCTCG--GGG--GAGGGGAAGG-------G--G-------G----GAGTTCTA------------------------------------AAGAAGGG------------AAGGAGT--A----CCACAC---ACGCATCAACGTTTTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------G-------------CC----------CCATCAGGCA------------GGCTTCGGAT-CTGGCTCCTCCTCCC-------------CC----CC--CCCCACC---------------------------------------------------------------------------------CATCT-CCCCCGGAAAA---------AC--ATCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGCGA
droRho1 scf7180000777200:72417-72786 - TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTACGCA--------T---------CTATATCCCCATGCCCATCCTCATCCACATACCCATCCTCATCCACTT--------T-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCGG-GGG--GAGCTCAAAGC------------------------------------------------------------------AAAAAGGG------------AGGTAGC--A--CAGCACAC---ACGCATCAGCGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------TGG---GGATTATCCC----------CCATCAGGGT------------GGCT-------------CCTGCTCCC-------------CC----TC-----------------------------------------------------------------------------CACTTTGAAAACCCCCCTTCC-CCGGAAAA---------TC--ATCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGCGA
droFic1 scf7180000453948:649053-649400 + TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTTGGTGGCA-----T---------CC------------------------------------------------------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCCTGC-GGG--GAGGGGAAAGG---AGCACCC-------A------------------------------------------------AAAAAGGG------------AAGGAGCTAA---GGCACAC---ACGCATCGACGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATAAGGC----------------CTCCCATTTA-------------CACCCCCTTCCCC-C----TC--CACCTCC----------CCATCCC------------------CCATTGAC-------------------T------------------------CCCCTGGT-AA---------TC--ATCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTTCTGGATGCGATGTTTGAGCGGAAGGTTCAGCCGGGCGA
droKik1 scf7180000302682:1570873-1571225 + TGGAGTCGGTAAAGAATGTACTCCTCTTCCGATCCCTCGACAAGGAGCAGGTAAGCT--------T-----AAATC-------------------------------------------CC----------A-----------------------------------------------------------------TGCCA-------CATAAATCATA--------------AGTACAG-------------GATGG---AGTAGTGGAAGTAGG------------------------------------------------AACAGTAGCAGGAGTAGGTGCTGGAGCTGGGGCACCACAC---ACGCATCAGCGC-TTAACCCGAATAAGTGT-------------TTGCCTGCGGTTTACTTTCCTTTTT-CG-------GT-----------------GTG---GGATTACCCC----------TCC-------------------------------TGGCTGCTTCTCA-CTC-----------------C-----------------------------------------------------------------------------CACTTCTACCACCACTCT-CC-CC-GAAATCCAT-----TC--ATCCCTTTTGTAATCGATTTGTTT----------------T--CGCAGATGAACCAGGTCCTGGATGCCATGTTCGAGCGAAAGGTTCAGCCATTGGA
droAna3 scaffold_13266:17269544-17269819 + TCGAATCGGTGAAGAACGTCCTTCTCTTCCGTTCCCTCGAAAAGGAGCAGGTTCGTGGCAG-TTGT---------CT------------------------------------------AT-T--------C-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AATCCCCA--GGCAGG--C------------G-GG-------T------------------------------------------------TG-------------------ACAGGC--A---GGCACAC---ATA----------------------------------------CTGCCTGCGGTTT----ACTTTTTG---GCATCGCGTG-TG--C-----------CA---GGATTATCCC----------CTTTT------------------------------GGTTGCCC-TCCT-------------CT----T---------------------------C-----------------------------------------------------------------------ATTG---------------T--ATCCT-TTTGTAACCGATTTGTTT----------------T--TGCAGATGAACCAGGTCCTGGATGCGATGTTCGAGCGAAAGGTTCAGCCAGGCGA
droBip1 scf7180000396735:537458-537720 + TCGAATCGGTGAAGAACGTCCTTCTCTTCCGTTCCCTCGAAAAGGAGCAGGTTCGTGGCAC----T---------CT------------------------------------------AT-T--------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AATCCCCT--GG---------------------------------------------------------------------------------------------------------C--A---GACACAC---ATA----------------------------------------CTGCCTGCGGTTT----TGCTTTTT-CGGCATCGCGTG-CG--C-----------CA---GGATTAC-------------CCATC----------------------------CTGGCTGCCC-TCCC-------------CT----TG--CTTTCCT--------------------------------------------------------------------------------------------G-----------------T-ATCC-TTTGTAACCGATTTGTTT----------------TTGTGCAGATGAACCAAGTCCTGGATGCGATGTTCGAGCGAAAGGTTCAGCCAGGCGA
dp5 3:6104093-6104366 - TGGAGTCGGTGAAAAATGTTCTCCTCTTCCGTTCGCTCGAAAAGGAACAGGTTCGTCG-------------------------------------------------------------AC-T--------G-----------------------------------------------------------------CCGCA-------CATAAATCATA--------------ATCCCCCG--CGCAGAGC-----------------------------------------------------------------------------------------------------------------------CACGGATGC-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTGC-G---------------------------TGG---GGATTATGCCACCCACAGACCCACT----------------------------CTGTCTGCCT-----------------------------CTTACTA-----------------------------------------------------------------------------------------------------------------------ACAACCAACTTGCTTGTGCGTCCTTCCCGTAT--TTCAGATGAACCAAGTCCTGGATGCGATGTTCGAGAGGAAGGTTCAGCCGGGCGA
droPer2 scaffold_2:6307309-6307582 - TCGAGTCGGTGAAAAATGTTCTCCTCTTCCGTTCGCTCGAAAAGGAACAGGTTCGTCG-------------------------------------------------------------AC-T--------G-----------------------------------------------------------------CCGCA-------CATAAATCATA--------------ATCCCCCG--CGCAGAGC-----------------------------------------------------------------------------------------------------------------------CACGGATGC-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTGC-G---------------------------TGG---GGATTATGCCACCCACAGACCCACT----------------------------CTGTCTGCCT-----------------------------CTCACTAACAGCAAACT-------------------------------------------------------------------------------------------------------TG-CTTGTGCGTCCTTCCT---------------GTCT--TTCAGATGAACCAAGTCTTGGATGCGATGTTCGAGAGGAAGGTTCAGCCGGGCGA
droWil2 scf2_1100000004513:5309662-5310001 - TGGAGTCGGTGAAGAATGTGCTTCTATTCCGCTCACTCGAAAAGGAACAGGCACGTA--------T---------AC------------------------------------------AC----------A-----------------------------------------------------------CACACATACTATTTGACCTATAAATCATA-TCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAT------ATATATATATTATGTCTGTTGT-----------------------------GGTCGCTTTGTAACGGT---GGTTAACCAC----------CTACGACGACGACGTCGACAAAAGTT---------------GC--CA-CCT-----------TGCCTTGCGGTTCCT---AAGTGGATT-G----TAT-GAGATTTCCTTTACCTAAATAAAATTGTTTTTTTCTTTCTTTTCTCCCACTTC----------------------------------------CA-CTACTACTCCACCTCCAT----------------C--TGTAGATGAATCAAGTGCTGGATGCCATGTTTGAGCGTAAAGTGCAGCCAGGCGA
droVir3 scaffold_12875:399110-399230 - CC---------------------CTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----TT--TTCCTCTAACAAAGCAGCTC----T--AAA-ATGCCTTTTGGCTA----------------------------------------------------------------------------------TTTTCTGTTTCGTTG----------------C-ACGCAGATGAATCAAGTGCTGGACGCGATGTTCGAGCGGAAGGTGCTGCCGGGCGA
droMoj3 scaffold_6496:5092687-5093096 + TCGAGTCAGTGAAGAATGTGCTGCTCTTCCGTTCGCTCGAGAAGGAACAGGTGCTTAC-ACA---TCCTTTCAATC-------TCTTGCCCGCCTT----------------------TAGTTTCCTTACTCCTCCATCTAAGACTCATAAATCTCTCGCATATTTTCGGTACAAATTCCACACACACACACACACACA----------CACAAAACACGACCA------------------------GAGC------------------------ACAAA-------------AGCC---AAAGAGTTGCTACCGCAAAA-CCG-----------------------AATC--A---C-----G---TTGTATGC--GG-GTTAGCTGAGTAGGTGT-------------AAGGA-------------------------AGTGTGTG-TG--C-----------TATTTGTGTTGTCCC----------CCATCCCCTT------------GTTT-------------CCTC-TCTC-------------TG----TC--TTTGTCTA-----GCATCCC----C--TTA-ATGCCTTTTGGCTATTTTCTC------------------------------------------------------------------------------------TGCTTG----------------T--TGCAGATGAATCAAGTGCTGGATGCGATGTTCGAGCGAAAGGTGCAGCCGGGCGA
droGri2 scaffold_1650:66-413 + TCGAGTCGGTGAAGAATGTGCTGCTCTTCCGTTCGCTGGAGAAGGAACAGGTGCGTA--------T---------CT------------------------------------------AG-----------------------CACATAAATCTCTGGCATGTTTCCTTCACCA----------------------CGCTA-------CACAA-----------------------------------AAGCCAAGC-------G--A-------G----CTCTTTTCGCACAGA-CACA-------GACAACCGCAAAAGCCG-----------------------------A---AGCA-----------------C-GTTGCCTGTGTGTGTGTGTGTGTGTGTGTT------------------------A-G---AGTGTGTGGTG--TGTTTTG----TGT---GGA---TGCCACT-------CCATC----------------------------TT--------------------------------TGCCATTCCG---CTGTT-GTT-G----TGT-AA-ATGCCTTCTGGCTGATTTCTGTTGTCTTGTTTTA------------------------------------------------------------------------TGTTT----------------TCGCACAGATGAATCAAGTGCTGGATGCGATGTTCGAGCGGAAGGTGGAACCAGGCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------CT------------------------------------------AA----------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCCCTTTGGG--GAGCTGGAGGA---AGCGATG-------G------------------------------------------------GAAAGGCA------------AAGGAGC--A---GGCAAAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------CC-TTTC-------------CC----TG--CTCCACTAAAAACACACCCA----A----------------------------------------------------------------------------------------ACCAT-GCGC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTT----TCCTTTTA-C---------------------------GGG---G..................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
droSec2
TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------CT------------------------------------------AC----------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCCCTTTGGG--GAGCTGGAGGA---AGCGATG-------G------------------------------------------------GAAAGGCA------------ACGGAGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------CC-TTCC-------------CC----TG--CTCCACCAAAAACACACCCA----C----------------------------------------------------------------------------------------ACCAT-GCGC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGTCCTGGATGCCATGTTC.......................2411.0010010
.................................................................................................................................................................................................................................................................GA---AGCGATG-------G------------------------------------------------GAAAGGCA------------G................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.........................CTTCCGATCCCTCGAGAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAAGTCCTGGATGCCAT...........................2111.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCTGGATGCCATGT.........................1811.0010010
dm3
TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------CT------------------------------------------AT----------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCTCGGGG--GAT------------------------------------------------------------------------------GGAA------------AAGAAGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTTGC---------------------------GGG---GGATTATCCC----------CCATCAAGCT------------GGCTTC-------------CC-TTCC-------------CG----CG--CTCCACCAAAAACACACCCA----C----------------------------------------------------------------------------------------ACCAT-GCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGTTCAGCCGGGTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTTCGAGCGAAAGGTTCAGC.......2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGATGCCATGTTCGAGCGAAAGG.............2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCGAAAGGTTCAGCCGGGTGA2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCCC-CTTGTAACTGATTTGTTT----------------T--CGCAG..................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATGTTCGAGCGAAAGGTTCAGC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCCCTCGAGAAGGAGCAGGTTCGCA--------T---------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGATTTGTTT----------------T--CGCAG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CCGATCCCTCGAGAAGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.CGAGTCGGTGAAGAACGTCCTCCTCTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.CGAGTCGGTGAAGAACGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGCCATGTTCGAGC...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTCCGATCCCTCGAGAAGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGTCCTGGATGCCAT...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTTCAGCCGGGTGA1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTTCCGATCCCTCGAGAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-CTTGTAACTGATTTGTTT----------------T--CGCAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTCGAGCGAAAGGTTCAGCCGGG...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGAAAGGTTCAGCCGGGT..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TA-------CATAAATCATA--------------AGTCTCTCGGGG--GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.CGAGTCGGTGAAGAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCATGTTCGAGCGAAA...............2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GTCTCTCGGGG--GAT------------------------------------------------------------------------------GGAA------------AAGAAGC--........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGAGCGAAAGGTTCAGCCGGG...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................T------------------------------------------------------------------------------GGAA------------AAGAAGC--A---GGCATAC---ACGCATC...................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGCCATGTTCGAGCGAAAGGT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................CGCA--------T---------CT------------------------------------------AT----------A-----------------------------------------------------------------CACTA-------CATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TAAATCATA--------------AGTCTCTCGGGG--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCGAGCGAAAGGTTCAGCCG.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........TGAAGAACGTCCTCCTCTTCCGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTCCTGGATGCCATGTTCG......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGTCGGTGAAGAACGTCCTCCTCTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCAAGTCCTGGATGCCATGTTCGAGC...................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAACGTCCTCCTCTTCCGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCGAGAAGGAGCAGGTTCGCA--------T---------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCC----------CCATCAAGCT------------GGCTTC-------------CC-T..................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACGTCCTCCTCTTCCGATCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGAAAGGTTCC.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ATA--------------AGTCTCTCGGGG--GAT------------------------------------------------------------------------------GGAA------------AAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......CGGTGAAGAACGTCCTCCTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGATGCCATGTTCGAG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGATGCCATGTTCGAGCGAA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCGAGTCGGTGAAGAACGTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AACGTCCTCCTCTTCCGATCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................GAT------------------------------------------------------------------------------GGAA------------AAGAAGC--A---GGCA................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGATGCCATGTTCG......................1911.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CTCTCGGGG--GAT------------------------------------------------------------------------------GGAA------------AAGAAGC--A---GG..................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGCCATGTTCGAGCGAAA...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCC-------------CG----CG--CTCCACCAAAAACA..........................................................................................................................................................................................................2211.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GG--GAT------------------------------------------------------------------------------GGAA------------AAGAAGC--A---A...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCTGGATGCCATGTTCGAGCGAA................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------T---------C-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AATCTCTC-GGG--GAGCTGAAAGCA--GGCG-GG-------G------------------------------------------------AA-------------------AAAGGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCC------------GGCTTC-------------CC------------------GG----TG--CTCCCCCA-AAATGGACTCG----C----------------------------------------------------------------------------------------ACCAG-GCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGATGCCATGTTC.......................1811.0010010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATGCCATGTTCGAGCGG.................2111.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCTGGATGCCATGTTCGAGCGGA................2611.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCGGAAGGTTCAGCCG.....1911.0010000100
................CGTCCTCCTCTTCCGATCCCTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCATGTTCGAGCGGAAG..............2111.0010000100
droYak3
TTGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGGTTCGCA--------G---------C-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCTCGGGG--GAGCTGGAAGA---AGTGATGGGGATGGG--------AATGGGAAAGG-CGTA-------GGG----------------GAAGGG-----------AAAGGAGC--A---GGCATAC---ACGCATCAGTGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----TCCTTTTA-C---------------------------G-G---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------CC------------------TT----GG--CTCCCC---AAATAGACCCA----C----------------------------------------------------------------------------------------ACCAT-GTCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................AAGGAGC--A---GGCATAC---ACGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTCCTGGATGCCATGTTC.......................2211.00101000000000
......CGGTGAAGAACGTCCTCCTCTTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGATTTGTTT----------------T--CGCAG..................................................2111.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCGGAAGGTTCAGCCGGGT..2311.00100001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATGCCATGTTCGAGCGGA................2311.00100001000000
.....................................................................................................................................................................................................................AATCATA--------------AGTCTCTCGGGG--GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................CCGATCCCTCGAGAAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.............................CGATCCCTCGAGAAGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGGAAGGTTCAGCC......2111.00100000010000
droEug1
TGGAGTCGGTGAAGAATGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTTCGTA--------T---------T-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCTC-GGGG-AA------AGGATTTG---T-------------------------------------------------------------GGGG------------AAGGAGCCCC---GGCATACATCACGCAACAGCGT-TTAACCCGAATAAATGT--------GTGTTGTGCCTGCGGTTT----CCCTTTTA-C---------------------------TGG---GGATTATCCC----------CCATCAGGCA----------GAGGCC---------------CC--CA-CCC-----------T----TA--CTTCCC---A-----------------------------------------------------------------------------C-ATTT-CC-CTCGAAAATCATCATCATC--ATCGC-CTTGTAACTGATTTGTTA----------------T--TGCAGATGAACCAAGTCCTGGATGCGATGTTCGAGCGAAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotal
No Reads
droBia1
TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAAGAGCAGGTTCGTGGCA-----G---------CC------------------------------------------AC-T--------A-----------------------------------------------------------------CACTG-------CATAAATCATA-TCATAACGAGGGGAGTCCCCC-G--------------------------------G------------------------------------------------AAAAGGGG------------CAGGAGC--A---GGCACAC---ACGCATCCGCGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTG----CCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCG------------GGCT-------------GCTG-TCCC-------------CA----TC--CTCCTC---------------------------------------------------------------T------------------------CCTCTGGG-ACCTATAG--CTC--ACCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAGGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCCGGCGASizeHit CountTotal NormTotal
No Reads
droTak1
TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAAGAGCAGGTTCGCA--------T---------C-------------------------------------------------------------------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCG--GGG--GAGCTC----------------------A------------------------------------------------GAAAGGGG------------AAGGAGC--A---GGCACAC---ACGCATCCGCGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATCAGGCA------------GGCTTC-------------TG------------------CT----TG--CTCCCC-----------CCA----C--------------------------------------------T------------------------CC-CTGGGAAA---------TC--AGCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCGATGTTTGAGCGGAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotal
No Reads
droEle1
TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTACGTCGCC-----A---------CC------------------------------------------AC----------A---------------------------------------------------------------CTCACTA-------CATAAATCATA--------------AGTCTCG--GGG--GAGGGGAAGG-------G--G-------G----GAGTTCTA------------------------------------AAGAAGGG------------AAGGAGT--A----CCACAC---ACGCATCAACGTTTTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------G-------------CC----------CCATCAGGCA------------GGCTTCGGAT-CTGGCTCCTCCTCCC-------------CC----CC--CCCCACC---------------------------------------------------------------------------------CATCT-CCCCCGGAAAA---------AC--ATCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotal
No Reads
droRho1
TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTACGCA--------T---------CTATATCCCCATGCCCATCCTCATCCACATACCCATCCTCATCCACTT--------T-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCTCGG-GGG--GAGCTCAAAGC------------------------------------------------------------------AAAAAGGG------------AGGTAGC--A--CAGCACAC---ACGCATCAGCGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------TGG---GGATTATCCC----------CCATCAGGGT------------GGCT-------------CCTGCTCCC-------------CC----TC-----------------------------------------------------------------------------CACTTTGAAAACCCCCCTTCC-CCGGAAAA---------TC--ATCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGGAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotal
No Reads
droFic1
TGGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAAAAGGAGCAGGTTGGTGGCA-----T---------CC------------------------------------------------------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AGTCCTGC-GGG--GAGGGGAAAGG---AGCACCC-------A------------------------------------------------AAAAAGGG------------AAGGAGCTAA---GGCACAC---ACGCATCGACGT-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTTA-C---------------------------GGG---GGATTATCCC----------CCATAAGGC----------------CTCCCATTTA-------------CACCCCCTTCCCC-C----TC--CACCTCC----------CCATCCC------------------CCATTGAC-------------------T------------------------CCCCTGGT-AA---------TC--ATCCC-CTTGTAACTGATTTGTTT----------------T--CGCAGATGAACCAAGTTCTGGATGCGATGTTTGAGCGGAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotal
No Reads
droKik1
TGGAGTCGGTAAAGAATGTACTCCTCTTCCGATCCCTCGACAAGGAGCAGGTAAGCT--------T-----AAATC-------------------------------------------CC----------A-----------------------------------------------------------------TGCCA-------CATAAATCATA--------------AGTACAG-------------GATGG---AGTAGTGGAAGTAGG------------------------------------------------AACAGTAGCAGGAGTAGGTGCTGGAGCTGGGGCACCACAC---ACGCATCAGCGC-TTAACCCGAATAAGTGT-------------TTGCCTGCGGTTTACTTTCCTTTTT-CG-------GT-----------------GTG---GGATTACCCC----------TCC-------------------------------TGGCTGCTTCTCA-CTC-----------------C-----------------------------------------------------------------------------CACTTCTACCACCACTCT-CC-CC-GAAATCCAT-----TC--ATCCCTTTTGTAATCGATTTGTTT----------------T--CGCAGATGAACCAGGTCCTGGATGCCATGTTCGAGCGAAAGGTTCAGCCATTGGASizeHit CountTotal NormTotal
No Reads
droAna3
TCGAATCGGTGAAGAACGTCCTTCTCTTCCGTTCCCTCGAAAAGGAGCAGGTTCGTGGCAG-TTGT---------CT------------------------------------------AT-T--------C-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AATCCCCA--GGCAGG--C------------G-GG-------T------------------------------------------------TG-------------------ACAGGC--A---GGCACAC---ATA----------------------------------------CTGCCTGCGGTTT----ACTTTTTG---GCATCGCGTG-TG--C-----------CA---GGATTATCCC----------CTTTT------------------------------GGTTGCCC-TCCT-------------CT----T---------------------------C-----------------------------------------------------------------------ATTG---------------T--ATCCT-TTTGTAACCGATTTGTTT----------------T--TGCAGATGAACCAGGTCCTGGATGCGATGTTCGAGCGAAAGGTTCAGCCAGGCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCTGGATGCGATGTTCGAGC...................2312.002000002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAAGGTTCAGCCAGGC..1911.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGTTCGAGCGAAAGGTTCAGC.......2511.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAGGTCCTGGATGCGATG..........................2211.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGAAAGGTTCAGCCAGG...2411.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGAAAGGTTCAGC.......2011.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCAGGTCCTGGATGC..............................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATGTTCGAGCGAAAGGT............2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGAAAGGTTCAGCCAGGC..2511.001000010
..GAATCGGTGAAGAACGTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGAAAGGTTCAGCCG.....2211.001000010
.CGAATCGGTGAAGAACGTCCTTCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droBip1
TCGAATCGGTGAAGAACGTCCTTCTCTTCCGTTCCCTCGAAAAGGAGCAGGTTCGTGGCAC----T---------CT------------------------------------------AT-T--------A-----------------------------------------------------------------CACTA-------CATAAATCATA--------------AATCCCCT--GG---------------------------------------------------------------------------------------------------------C--A---GACACAC---ATA----------------------------------------CTGCCTGCGGTTT----TGCTTTTT-CGGCATCGCGTG-CG--C-----------CA---GGATTAC-------------CCATC----------------------------CTGGCTGCCC-TCCC-------------CT----TG--CTTTCCT--------------------------------------------------------------------------------------------G-----------------T-ATCC-TTTGTAACCGATTTGTTT----------------TTGTGCAGATGAACCAAGTCCTGGATGCGATGTTCGAGCGAAAGGTTCAGCCAGGCGASizeHit CountTotal NormTotal
No Reads
dp5
TGGAGTCGGTGAAAAATGTTCTCCTCTTCCGTTCGCTCGAAAAGGAACAGGTTCGTCG-------------------------------------------------------------AC-T--------G-----------------------------------------------------------------CCGCA-------CATAAATCATA--------------ATCCCCCG--CGCAGAGC-----------------------------------------------------------------------------------------------------------------------CACGGATGC-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTGC-G---------------------------TGG---GGATTATGCCACCCACAGACCCACT----------------------------CTGTCTGCCT-----------------------------CTTACTA-----------------------------------------------------------------------------------------------------------------------ACAACCAACTTGCTTGTGCGTCCTTCCCGTAT--TTCAGATGAACCAAGTCCTGGATGCGATGTTCGAGAGGAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGAGGAAGGTTCAGCCGG....2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATGTTCGAGAGGAA...............1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAAGGTTCAGCCGGGC..2011.0010100000000
.........................CTTCCGTTCGCTCGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........GAAAAATGTTCTCCTCTTCCGTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAGGAAGGTTCAGCCGGGC..2211.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGTCCTGGATGCGAT...........................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTCGAGAGGAAGGTT...........1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGAACCAAGTCCTGGATGC..............................2311.0010100000000
.........................CTTCCGTTCGCTCGAAAAGGAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCCTGGATGCGATGTT........................2011.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGC-G---------------------------TGG---GGATTATGCCA........................................................................................................................................................................................................................................................................................................2011.0010000001000
.................GTTCTCCTCTTCCGTTCGCTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
TCGAGTCGGTGAAAAATGTTCTCCTCTTCCGTTCGCTCGAAAAGGAACAGGTTCGTCG-------------------------------------------------------------AC-T--------G-----------------------------------------------------------------CCGCA-------CATAAATCATA--------------ATCCCCCG--CGCAGAGC-----------------------------------------------------------------------------------------------------------------------CACGGATGC-TTAACCCGAATAAGTGT-------------CTGCCTGCGGTTT----CCCTTTGC-G---------------------------TGG---GGATTATGCCACCCACAGACCCACT----------------------------CTGTCTGCCT-----------------------------CTCACTAACAGCAAACT-------------------------------------------------------------------------------------------------------TG-CTTGTGCGTCCTTCCT---------------GTCT--TTCAGATGAACCAAGTCTTGGATGCGATGTTCGAGAGGAAGGTTCAGCCGGGCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGAGGAAGGTTCAGCCGGGC..2312.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGTTCAGCCGGGC..1912.002100001
..........................TTCCGTTCGCTCGAAAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGAGGAAGGTTCAGCCGGGC..2511.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACCAAGTCTTGGATGCGATGTT........................2711.001000001
droWil2
TGGAGTCGGTGAAGAATGTGCTTCTATTCCGCTCACTCGAAAAGGAACAGGCACGTA--------T---------AC------------------------------------------AC----------A-----------------------------------------------------------CACACATACTATTTGACCTATAAATCATA-TCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAT------ATATATATATTATGTCTGTTGT-----------------------------GGTCGCTTTGTAACGGT---GGTTAACCAC----------CTACGACGACGACGTCGACAAAAGTT---------------GC--CA-CCT-----------TGCCTTGCGGTTCCT---AAGTGGATT-G----TAT-GAGATTTCCTTTACCTAAATAAAATTGTTTTTTTCTTTCTTTTCTCCCACTTC----------------------------------------CA-CTACTACTCCACCTCCAT----------------C--TGTAGATGAATCAAGTGCTGGATGCCATGTTTGAGCGTAAAGTGCAGCCAGGCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATCAAGTGCTGGAT................................1912.00210010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATCAAGTGCTGGATGC..............................2112.00200110
..............................GCTCACTCGAAAAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGTGCAGCCAGGCG.1811.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAATCAAGTGCTGGATGCCAT...........................2511.00100100
.........................ATTCCGCTCACTCGAAAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAAGTGCAGCCAGGC..1811.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTGCTGGATGCCATGTTTGAGCG..................2811.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACAAAAGTT---------------GC--CA-CCT-----------TGCCT............................................................................................................................................................................................................................2511.00110000
...............ATGTGCTTCTATTCCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..........GAAGAATGTGCTTCTATTCCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
droVir3
CC---------------------CTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----TT--TTCCTCTAACAAAGCAGCTC----T--AAA-ATGCCTTTTGGCTA----------------------------------------------------------------------------------TTTTCTGTTTCGTTG----------------C-ACGCAGATGAATCAAGTGCTGGACGCGATGTTCGAGCGGAAGGTGCTGCCGGGCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTGCTGGACGCGAT...........................1912.002000000000000000100000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATCAAGTGCTGGACGC..............................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGTTCGAGCGGAAGGTGC..........2211.001000000000000000000000000010000000000000000000000000000000000000
droMoj3
TCGAGTCAGTGAAGAATGTGCTGCTCTTCCGTTCGCTCGAGAAGGAACAGGTGCTTAC-ACA---TCCTTTCAATC-------TCTTGCCCGCCTT----------------------TAGTTTCCTTACTCCTCCATCTAAGACTCATAAATCTCTCGCATATTTTCGGTACAAATTCCACACACACACACACACACA----------CACAAAACACGACCA------------------------GAGC------------------------ACAAA-------------AGCC---AAAGAGTTGCTACCGCAAAA-CCG-----------------------AATC--A---C-----G---TTGTATGC--GG-GTTAGCTGAGTAGGTGT-------------AAGGA-------------------------AGTGTGTG-TG--C-----------TATTTGTGTTGTCCC----------CCATCCCCTT------------GTTT-------------CCTC-TCTC-------------TG----TC--TTTGTCTA-----GCATCCC----C--TTA-ATGCCTTTTGGCTATTTTCTC------------------------------------------------------------------------------------TGCTTG----------------T--TGCAGATGAATCAAGTGCTGGATGCGATGTTCGAGCGAAAGGTGCAGCCGGGCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGAGCGAAAGGTGCAGCCGGGC..2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATGAATCAAGTGCTGGATGC..............................2311.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGATGCGATGTTCGAGCG..................2311.001000001
............AGAATGTGCTGCTCTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATCAAGTGCTGGATG...............................2011.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGATGTTCGAGCGAA................2011.001000001
..........GAAGAATGTGCTGCTCTTCCGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATCAAGTGCTGGATGCGAT...........................2411.001100000
...............ATGTGCTGCTCTTCCGTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droGri2
TCGAGTCGGTGAAGAATGTGCTGCTCTTCCGTTCGCTGGAGAAGGAACAGGTGCGTA--------T---------CT------------------------------------------AG-----------------------CACATAAATCTCTGGCATGTTTCCTTCACCA----------------------CGCTA-------CACAA-----------------------------------AAGCCAAGC-------G--A-------G----CTCTTTTCGCACAGA-CACA-------GACAACCGCAAAAGCCG-----------------------------A---AGCA-----------------C-GTTGCCTGTGTGTGTGTGTGTGTGTGTGTT------------------------A-G---AGTGTGTGGTG--TGTTTTG----TGT---GGA---TGCCACT-------CCATC----------------------------TT--------------------------------TGCCATTCCG---CTGTT-GTT-G----TGT-AA-ATGCCTTCTGGCTGATTTCTGTTGTCTTGTTTTA------------------------------------------------------------------------TGTTT----------------TCGCACAGATGAATCAAGTGCTGGATGCGATGTTCGAGCGGAAGGTGGAACCAGGCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:50 AM