ID:

dsi_11857

 Coordinate:

3l:16376027-16376176 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.5 -32.4 -32.2

Flybase annnotation

CDS [3l_16376177_16376322_-]; exon [3l_16376177_16376322_-]; intron [3l_16375428_16376176_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGTGGCCGAGACGCATCAGGTTCTGGTGCTAAATAATCTACGATCACGGTAAGTTTCCGACCAGGAGAAGCCGGCACAGAGCCATTCCCGCTCTCTCCTCTTGTTGTTACTAATCATGAACCGATACATTACTGAAAGTGCCTGGTTATCCAGATGACAGCGTTGGAAAACCTGTTCAGAACATGTATTCCCAAAAGCAGAGATCCATTGATCATCGGAAAGTTGGGCTGATCCCCCTACACAACCCC
**************************************************...(((...((((.(((((((((.(((.....)))......))).))))))...))))..)))...........(((((((..((((....((..((((.((((.(((....))))))).)))).))))))...))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
........CGAGACGCATCAGGTTCTG............................................................................................................................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0
.......................................................................................................................GAACCGATACATTACTGAAAGTGCCTG........................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.....GGCCGAGACGCATCAGGTTCTGGT............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
...................AGGTTCTGGTGCTAAATAAT................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................TCAGAACATGTATTCCCAAAAGCAGAGA............................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................TATTCCCAAAAGCAGAGATCCATTGAT.................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.........GAGACGCATCAGGTTCTG............................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAAGCAGAGATCCATTAGTGA.................................. 21 3 4 0.50 2 0 0 0 0 0 2 0 0
.............................................................................................................TACTCATCATCGACCGATA.......................................................................................................................... 19 3 7 0.29 2 0 0 0 0 2 0 0 0
..........................................................................................................................................................GATGACAGCGTTGTAA................................................................................ 16 1 4 0.25 1 0 0 0 0 1 0 0 0
....................................................................................................................................................TATCCAGAAGACATCGTT.................................................................................... 18 2 20 0.15 3 0 0 0 0 0 3 0 0
............................................................................................................................................................................................................................AGGGTTGGGCTGTTCCCCC........... 19 3 8 0.13 1 1 0 0 0 0 0 0 0
..............GCATCAGGTACTGGT............................................................................................................................................................................................................................. 15 1 9 0.11 1 0 0 0 0 0 0 1 0
.............................................................................................................TACTCATCATTGACCGATA.......................................................................................................................... 19 3 11 0.09 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................AACATGTATTCCCTAGA.................................................... 17 2 19 0.05 1 0 0 0 0 0 0 1 0
......................................................................................................................................TGAAAGTGCCTCGTCA.................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
...................................................................................................................................................TTATCCAGAAGACATCGTTT................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1
..........................................CGATCACGGTAGGGT................................................................................................................................................................................................. 15 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CCACACCGGCTCTGCGTAGTCCAAGACCACGATTTATTAGATGCTAGTGCCATTCAAAGGCTGGTCCTCTTCGGCCGTGTCTCGGTAAGGGCGAGAGAGGAGAACAACAATGATTAGTACTTGGCTATGTAATGACTTTCACGGACCAATAGGTCTACTGTCGCAACCTTTTGGACAAGTCTTGTACATAAGGGTTTTCGTCTCTAGGTAACTAGTAGCCTTTCAACCCGACTAGGGGGATGTGTTGGGG
**************************************************...(((...((((.(((((((((.(((.....)))......))).))))))...))))..)))...........(((((((..((((....((..((((.((((.(((....))))))).)))).))))))...))))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body
..ACATCGGCTCTGCCTAGTC..................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0
............................................................................GTGACTCGATAAGGGCG............................................................................................................................................................. 17 2 14 0.86 12 10 0 2 0 0 0 0
..........................................................................................................................GGCTATGTAATGAGT................................................................................................................. 15 1 4 0.50 2 0 0 1 1 0 0 0
....................................................................................................................GTGCAAGGCTATGTAATGA................................................................................................................... 19 3 7 0.29 2 1 0 0 1 0 0 0
........................................................................................GGGCGAGAGAGTAGAAAAACT............................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0
......CGGCGATGCGTAGTCCA................................................................................................................................................................................................................................... 17 2 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................TCACTAGGTAACAAGTAGTC.............................. 20 3 7 0.14 1 0 0 0 0 0 0 1
.........................................................AGGCTGGTCCTAATCGG................................................................................................................................................................................ 17 2 17 0.12 2 0 0 0 0 0 2 0
.......................................................................................................................................................................................................................................CTAGTCGGATGTGTTGG.. 17 2 10 0.10 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................ACTAGTCGGATGTGTTG... 17 2 12 0.08 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................ACTAGTCGGATGTGTTGGA. 19 3 13 0.08 1 0 0 1 0 0 0 0
.................................................................................TCGATAAGGGCGATCGAGG...................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................GACTAGTCGGATGTGGTGG.. 19 3 17 0.06 1 0 0 1 0 0 0 0
.......................................................................................................................................................GGACTACTGTAGCAACCT................................................................................. 18 2 17 0.06 1 0 0 1 0 0 0 0
.........................................................................................................................AGGCTATGTAATGAGT................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0
............................................................................GTGACTCGATAAGGGC.............................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................ACTATGGGGATGTGAT.... 16 2 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................CTAGTAGCCTGTCATC....................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/24/2015 at 04:29 AM